RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 NFIBO00712 420 aa10.89□□□□□ -0.67
LDLR-211ENST00000560173 DHX16O60231 1041 aaKnown RBP10.89□□□□□ -0.67
LDLR-211ENST00000560173 RPS6KB1P23443 525 aa10.89□□□□□ -0.67
LDLR-211ENST00000560173 CYP2C19P33261 490 aa10.89□□□□□ -0.67
LDLR-211ENST00000560173 GJA8P48165 433 aa10.89□□□□□ -0.67
LDLR-211ENST00000560173 BLOC1S2Q6QNY1 142 aa10.89□□□□□ -0.67
LDLR-211ENST00000560173 FAM133AQ8N9E0 248 aa10.89□□□□□ -0.67
LDLR-211ENST00000560173 SLC17A8Q8NDX2 589 aa10.89□□□□□ -0.67
LDLR-211ENST00000560173 TRPV1Q8NER1 839 aa10.89□□□□□ -0.67
LDLR-211ENST00000560173 CTCFLQ8NI51 663 aaPredicted RBP10.89□□□□□ -0.67
LDLR-211ENST00000560173 CLEC4DQ8WXI8 215 aa10.89□□□□□ -0.67
LDLR-211ENST00000560173 SHISA4Q96DD7 197 aa10.89□□□□□ -0.67
LDLR-211ENST00000560173 RIOX1Q9H6W3 641 aa10.89□□□□□ -0.67
LDLR-211ENST00000560173 VAT1LQ9HCJ6 419 aa10.89□□□□□ -0.67
LDLR-211ENST00000560173 HMX1Q9NP08 348 aaPredicted RBP10.89□□□□□ -0.67
LDLR-211ENST00000560173 CYP39A1Q9NYL5 469 aa10.89□□□□□ -0.67
LDLR-211ENST00000560173 SLC12A7Q9Y666 1083 aa10.89□□□□□ -0.67
LDLR-211ENST00000560173 ZNFX1Q9P2E3 1918 aaKnown RBP10.89□□□□□ -0.67
LDLR-211ENST00000560173 BAZ2BQ9UIF8 2168 aaKnown RBP10.89□□□□□ -0.67
LDLR-211ENST00000560173 CEP290O15078 2479 aa10.89□□□□□ -0.67
LDLR-211ENST00000560173 A0A0C4DFX4 3053 aa10.88□□□□□ -0.67
LDLR-211ENST00000560173 POTEB2H3BUK9 544 aa10.88□□□□□ -0.67
LDLR-211ENST00000560173 CYTH3O43739 400 aa10.88□□□□□ -0.67
LDLR-211ENST00000560173 PPP1R11O60927 126 aaPredicted RBP10.88□□□□□ -0.67
LDLR-211ENST00000560173 CALM1P0DP23 149 aa10.88□□□□□ -0.67
LDLR-211ENST00000560173 CALM2P0DP24 149 aa10.88□□□□□ -0.67
LDLR-211ENST00000560173 CALM3P0DP25 149 aa10.88□□□□□ -0.67
LDLR-211ENST00000560173 CYBAP13498 195 aa10.88□□□□□ -0.67
LDLR-211ENST00000560173 RXRAP19793 462 aa10.88□□□□□ -0.67
LDLR-211ENST00000560173 CASTP20810 708 aaKnown RBP10.88□□□□□ -0.67
LDLR-211ENST00000560173 PSMA5P28066 241 aa10.88□□□□□ -0.67
LDLR-211ENST00000560173 CCND3P30281 292 aaPredicted RBP10.88□□□□□ -0.67
LDLR-211ENST00000560173 KIF5BP33176 963 aa10.88□□□□□ -0.67
LDLR-211ENST00000560173 CNTN2Q02246 1040 aa10.88□□□□□ -0.67
LDLR-211ENST00000560173 USH1GQ495M9 461 aa10.88□□□□□ -0.67
LDLR-211ENST00000560173 APOA5Q6Q788 366 aa10.88□□□□□ -0.67
LDLR-211ENST00000560173 NSMFQ6X4W1 530 aa10.88□□□□□ -0.67
LDLR-211ENST00000560173 ZNF467Q7Z7K2 595 aaPredicted RBP10.88□□□□□ -0.67
LDLR-211ENST00000560173 MICU3Q86XE3 530 aa10.88□□□□□ -0.67
LDLR-211ENST00000560173 FBXO11Q86XK2 927 aa10.88□□□□□ -0.67
LDLR-211ENST00000560173 RAB11FIP4Q86YS3 637 aa10.88□□□□□ -0.67
LDLR-211ENST00000560173 FBXL16Q8N461 479 aa10.88□□□□□ -0.67
LDLR-211ENST00000560173 MSL3Q8N5Y2 521 aaKnown RBP10.88□□□□□ -0.67
LDLR-211ENST00000560173 U2AF1L4Q8WU68 220 aaKnown RBP10.88□□□□□ -0.67
LDLR-211ENST00000560173 DEFB118Q96PH6 123 aa10.88□□□□□ -0.67
LDLR-211ENST00000560173 TINF2Q9BSI4 451 aa10.88□□□□□ -0.67
LDLR-211ENST00000560173 SPZ1Q9BXG8 430 aa10.88□□□□□ -0.67
LDLR-211ENST00000560173 TM6SF1Q9BZW5 370 aa10.88□□□□□ -0.67
LDLR-211ENST00000560173 PLXNA1Q9UIW2 1896 aa10.88□□□□□ -0.67
LDLR-211ENST00000560173 BRPF3Q9ULD4 1205 aa10.88□□□□□ -0.67
LDLR-211ENST00000560173 ABCB11O95342 1321 aa10.87□□□□□ -0.67
LDLR-211ENST00000560173 SYNGAP1Q96PV0 1343 aa10.87□□□□□ -0.67
LDLR-211ENST00000560173 KLF18A0A0U1RQI7 1052 aa10.87□□□□□ -0.67
LDLR-211ENST00000560173 H0YGN5 161 aa10.87□□□□□ -0.67
LDLR-211ENST00000560173 ZBTB5O15062 677 aa10.87□□□□□ -0.67
LDLR-211ENST00000560173 EIF5BO60841 1220 aaKnown RBP10.87□□□□□ -0.67
LDLR-211ENST00000560173 PLEKHA8P1O95397 391 aa10.87□□□□□ -0.67
LDLR-211ENST00000560173 SGPL1O95470 568 aa10.87□□□□□ -0.67
LDLR-211ENST00000560173 SMARCA1P28370 1054 aa10.87□□□□□ -0.67
LDLR-211ENST00000560173 GNAQP50148 359 aa10.87□□□□□ -0.67
LDLR-211ENST00000560173 RCAN1P53805 252 aa10.87□□□□□ -0.67
LDLR-211ENST00000560173 C8orf34Q49A92 452 aa10.87□□□□□ -0.67
LDLR-211ENST00000560173 MAMDC4Q6UXC1 1216 aa10.87□□□□□ -0.67
LDLR-211ENST00000560173 SLC30A10Q6XR72 485 aa10.87□□□□□ -0.67
LDLR-211ENST00000560173 Q6ZUG5 572 aa10.87□□□□□ -0.67
LDLR-211ENST00000560173 TMTC3Q6ZXV5 915 aa10.87□□□□□ -0.67
LDLR-211ENST00000560173 HOMER1Q86YM7 354 aa10.87□□□□□ -0.67
LDLR-211ENST00000560173 CCDC144CPQ8IYA2 1237 aa10.87□□□□□ -0.67
LDLR-211ENST00000560173 FANCBQ8NB91 859 aa10.87□□□□□ -0.67
LDLR-211ENST00000560173 PIGSQ96S52 555 aa10.87□□□□□ -0.67
LDLR-211ENST00000560173 LZTS2Q9BRK4 669 aa10.87□□□□□ -0.67
LDLR-211ENST00000560173 AMNQ9BXJ7 453 aa10.87□□□□□ -0.67
LDLR-211ENST00000560173 AGXT2Q9BYV1 514 aa10.87□□□□□ -0.67
LDLR-211ENST00000560173 CRISPLD2Q9H0B8 497 aa10.87□□□□□ -0.67
LDLR-211ENST00000560173 ZSWIM6Q9HCJ5 1215 aa10.87□□□□□ -0.67
LDLR-211ENST00000560173 NRBP1Q9UHY1 535 aa10.87□□□□□ -0.67
LDLR-211ENST00000560173 ASTN1O14525 1302 aa10.86□□□□□ -0.67
LDLR-211ENST00000560173 LCTP09848 1927 aa10.86□□□□□ -0.67
LDLR-211ENST00000560173 SOWAHBA6NEL2 793 aa10.86□□□□□ -0.67
LDLR-211ENST00000560173 ZBTB43O43298 467 aa10.86□□□□□ -0.67
LDLR-211ENST00000560173 SEC24BO95487 1268 aa10.86□□□□□ -0.67
LDLR-211ENST00000560173 ANAPC15P60006 121 aa10.86□□□□□ -0.67
LDLR-211ENST00000560173 FGD1P98174 961 aa10.86□□□□□ -0.67
LDLR-211ENST00000560173 BAATQ14032 418 aaPredicted RBP10.86□□□□□ -0.67
LDLR-211ENST00000560173 PRAMEF19Q5SWL8 479 aa10.86□□□□□ -0.67
LDLR-211ENST00000560173 LHX8Q68G74 356 aa10.86□□□□□ -0.67
LDLR-211ENST00000560173 SYNE3Q6ZMZ3 975 aa10.86□□□□□ -0.67
LDLR-211ENST00000560173 RUFY3Q7L099 469 aa10.86□□□□□ -0.67
LDLR-211ENST00000560173 SRBD1Q8N5C6 995 aaKnown RBP10.86□□□□□ -0.67
LDLR-211ENST00000560173 RGS22Q8NE09 1264 aa10.86□□□□□ -0.67
LDLR-211ENST00000560173 BRF1Q92994 677 aa10.86□□□□□ -0.67
LDLR-211ENST00000560173 IL17RAQ96F46 866 aa10.86□□□□□ -0.67
LDLR-211ENST00000560173 MAF1Q9H063 256 aa10.86□□□□□ -0.67
LDLR-211ENST00000560173 NID2Q14112 1375 aa10.86□□□□□ -0.67
LDLR-211ENST00000560173 PNMA6FA0A0J9YX94 578 aa10.85□□□□□ -0.67
LDLR-211ENST00000560173 PTPDC1A2A3K4 754 aa10.85□□□□□ -0.67
LDLR-211ENST00000560173 GOLGA8AA7E2F4 631 aa10.85□□□□□ -0.67
LDLR-211ENST00000560173 GOLGA8BA8MQT2 603 aa10.85□□□□□ -0.67
LDLR-211ENST00000560173 OPLAHO14841 1288 aa10.85□□□□□ -0.67
LDLR-211ENST00000560173 SNAI1O95863 264 aaPredicted RBP10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 212.8 ms