RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 DNAH12Q6ZR08 3092 aa14.67□□□□□ -0.06
SMAD3-208ENST00000558827 RAD50Q92878 1312 aa14.66□□□□□ -0.06
SMAD3-208ENST00000558827 SYNGAP1Q96PV0 1343 aa14.66□□□□□ -0.06
SMAD3-208ENST00000558827 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.66□□□□□ -0.06
SMAD3-208ENST00000558827 SNHG28P0DPA3 235 aa14.66□□□□□ -0.06
SMAD3-208ENST00000558827 TRIM60Q495X7 471 aa14.66□□□□□ -0.06
SMAD3-208ENST00000558827 STOX1Q6ZVD7 989 aa14.66□□□□□ -0.06
SMAD3-208ENST00000558827 STAG2Q8N3U4 1231 aa14.66□□□□□ -0.06
SMAD3-208ENST00000558827 TBC1D5Q92609 795 aa14.66□□□□□ -0.06
SMAD3-208ENST00000558827 PRDM5Q9NQX1 630 aaPredicted RBP14.66□□□□□ -0.06
SMAD3-208ENST00000558827 PDGFCQ9NRA1 345 aa14.66□□□□□ -0.06
SMAD3-208ENST00000558827 NRBP1Q9UHY1 535 aa14.66□□□□□ -0.06
SMAD3-208ENST00000558827 RBM8AQ9Y5S9 174 aaKnown RBP14.66□□□□□ -0.06
SMAD3-208ENST00000558827 U3KPZ7 1027 aaPredicted RBP14.66□□□□□ -0.06
SMAD3-208ENST00000558827 E7EWF7 191 aa14.65□□□□□ -0.06
SMAD3-208ENST00000558827 BEX3Q00994 111 aa14.65□□□□□ -0.06
SMAD3-208ENST00000558827 TRDNQ13061 729 aa14.65□□□□□ -0.06
SMAD3-208ENST00000558827 CCDC178Q5BJE1 867 aa14.65□□□□□ -0.06
SMAD3-208ENST00000558827 IFIT1BQ5T764 474 aaKnown RBP14.65□□□□□ -0.06
SMAD3-208ENST00000558827 SLC30A10Q6XR72 485 aa14.65□□□□□ -0.06
SMAD3-208ENST00000558827 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.65□□□□□ -0.06
SMAD3-208ENST00000558827 ZNF467Q7Z7K2 595 aaPredicted RBP14.65□□□□□ -0.06
SMAD3-208ENST00000558827 RNF180Q86T96 592 aa14.65□□□□□ -0.06
SMAD3-208ENST00000558827 FBXO16Q8IX29 292 aaPredicted RBP14.65□□□□□ -0.06
SMAD3-208ENST00000558827 ADGRF4Q8IZF3 695 aa14.65□□□□□ -0.06
SMAD3-208ENST00000558827 CLEC4DQ8WXI8 215 aa14.65□□□□□ -0.06
SMAD3-208ENST00000558827 PRO3102Q9H379 93 aa14.65□□□□□ -0.06
SMAD3-208ENST00000558827 ABHD16BQ9H3Z7 469 aa14.65□□□□□ -0.06
SMAD3-208ENST00000558827 CNNM2Q9H8M5 875 aa14.65□□□□□ -0.06
SMAD3-208ENST00000558827 BAZ2BQ9UIF8 2168 aaKnown RBP14.65□□□□□ -0.06
SMAD3-208ENST00000558827 SYNRGQ9UMZ2 1314 aa14.65□□□□□ -0.06
SMAD3-208ENST00000558827 RANBP2P49792 3224 aaKnown RBP14.64□□□□□ -0.07
SMAD3-208ENST00000558827 IFIT3O14879 490 aaKnown RBP14.64□□□□□ -0.07
SMAD3-208ENST00000558827 ADAMTS4O75173 837 aa14.64□□□□□ -0.07
SMAD3-208ENST00000558827 PARP1P09874 1014 aaKnown RBP14.64□□□□□ -0.07
SMAD3-208ENST00000558827 C6orf222P0C671 652 aaPredicted RBP14.64□□□□□ -0.07
SMAD3-208ENST00000558827 SEC23AQ15436 765 aa14.64□□□□□ -0.07
SMAD3-208ENST00000558827 KCNA10Q16322 511 aa14.64□□□□□ -0.07
SMAD3-208ENST00000558827 CDC37Q16543 378 aaPredicted RBP14.64□□□□□ -0.07
SMAD3-208ENST00000558827 CENPQQ7L2Z9 268 aaPredicted RBP14.64□□□□□ -0.07
SMAD3-208ENST00000558827 SH3RF1Q7Z6J0 888 aa14.64□□□□□ -0.07
SMAD3-208ENST00000558827 MSL3Q8N5Y2 521 aaKnown RBP14.64□□□□□ -0.07
SMAD3-208ENST00000558827 ANKS1AQ92625 1134 aa14.64□□□□□ -0.07
SMAD3-208ENST00000558827 VTI1AQ96AJ9 217 aa14.64□□□□□ -0.07
SMAD3-208ENST00000558827 GDF15Q99988 308 aa14.64□□□□□ -0.07
SMAD3-208ENST00000558827 UBE2OQ9C0C9 1292 aaKnown RBP14.64□□□□□ -0.07
SMAD3-208ENST00000558827 KATNBL1Q9H079 304 aa14.64□□□□□ -0.07
SMAD3-208ENST00000558827 GPHNQ9NQX3 736 aaPredicted RBP14.64□□□□□ -0.07
SMAD3-208ENST00000558827 ASB14A6NK59 587 aa14.63□□□□□ -0.07
SMAD3-208ENST00000558827 TNFAIP2Q03169 654 aa14.63□□□□□ -0.07
SMAD3-208ENST00000558827 TLE2Q04725 743 aa14.63□□□□□ -0.07
SMAD3-208ENST00000558827 COL9A3Q14050 684 aaPredicted RBP14.63□□□□□ -0.07
SMAD3-208ENST00000558827 GPATCH4Q5T3I0 446 aaKnown RBP14.63□□□□□ -0.07
SMAD3-208ENST00000558827 RNF207Q6ZRF8 634 aa14.63□□□□□ -0.07
SMAD3-208ENST00000558827 KIAA1211Q6ZU35 1233 aa14.63□□□□□ -0.07
SMAD3-208ENST00000558827 RALYLQ86SE5 291 aaKnown RBP14.63□□□□□ -0.07
SMAD3-208ENST00000558827 PIBF1Q8WXW3 757 aa14.63□□□□□ -0.07
SMAD3-208ENST00000558827 MAP4K1Q92918 833 aa14.63□□□□□ -0.07
SMAD3-208ENST00000558827 ESYT1Q9BSJ8 1104 aa14.63□□□□□ -0.07
SMAD3-208ENST00000558827 PHF24Q9UPV7 400 aa14.63□□□□□ -0.07
SMAD3-208ENST00000558827 LCTP09848 1927 aa14.62□□□□□ -0.07
SMAD3-208ENST00000558827 A0A1W2PQ45 241 aaPredicted RBP14.62□□□□□ -0.07
SMAD3-208ENST00000558827 A0A1W2PQY0 241 aa14.62□□□□□ -0.07
SMAD3-208ENST00000558827 SOX1O00570 391 aaPredicted RBP14.62□□□□□ -0.07
SMAD3-208ENST00000558827 DYNC1LI2O43237 492 aaPredicted RBP14.62□□□□□ -0.07
SMAD3-208ENST00000558827 PQBP1O60828 265 aaKnown RBP14.62□□□□□ -0.07
SMAD3-208ENST00000558827 DUSP11O75319 330 aaKnown RBP14.62□□□□□ -0.07
SMAD3-208ENST00000558827 ALDH5A1P51649 535 aaPredicted RBP14.62□□□□□ -0.07
SMAD3-208ENST00000558827 ACLYP53396 1101 aa14.62□□□□□ -0.07
SMAD3-208ENST00000558827 RPS6P62753 249 aaKnown RBP14.62□□□□□ -0.07
SMAD3-208ENST00000558827 QRICH1Q2TAL8 776 aa14.62□□□□□ -0.07
SMAD3-208ENST00000558827 ASPRV1Q53RT3 343 aa14.62□□□□□ -0.07
SMAD3-208ENST00000558827 GNASQ5JWF2 1037 aa14.62□□□□□ -0.07
SMAD3-208ENST00000558827 KLHDC9Q8NEP7 349 aa14.62□□□□□ -0.07
SMAD3-208ENST00000558827 LRCH3Q96II8 777 aa14.62□□□□□ -0.07
SMAD3-208ENST00000558827 LSG1Q9H089 658 aaKnown RBP14.62□□□□□ -0.07
SMAD3-208ENST00000558827 JMJD4Q9H9V9 463 aa14.62□□□□□ -0.07
SMAD3-208ENST00000558827 KLRF2D3W0D1 207 aa14.61□□□□□ -0.07
SMAD3-208ENST00000558827 SMPD1P17405 629 aa14.61□□□□□ -0.07
SMAD3-208ENST00000558827 ANTXR2P58335 489 aa14.61□□□□□ -0.07
SMAD3-208ENST00000558827 WTAPQ15007 396 aa14.61□□□□□ -0.07
SMAD3-208ENST00000558827 TMEM67Q5HYA8 995 aa14.61□□□□□ -0.07
SMAD3-208ENST00000558827 TAPT1Q6NXT6 567 aa14.61□□□□□ -0.07
SMAD3-208ENST00000558827 HOMER1Q86YM7 354 aa14.61□□□□□ -0.07
SMAD3-208ENST00000558827 RAB11FIP4Q86YS3 637 aa14.61□□□□□ -0.07
SMAD3-208ENST00000558827 NCOA7Q8NI08 942 aa14.61□□□□□ -0.07
SMAD3-208ENST00000558827 CCDC136Q96JN2 1154 aa14.61□□□□□ -0.07
SMAD3-208ENST00000558827 LBHD1Q9BQE6 289 aaPredicted RBP14.61□□□□□ -0.07
SMAD3-208ENST00000558827 MYL10Q9BUA6 226 aa14.61□□□□□ -0.07
SMAD3-208ENST00000558827 ANO2Q9NQ90 1003 aa14.61□□□□□ -0.07
SMAD3-208ENST00000558827 PRKAG2Q9UGJ0 569 aa14.61□□□□□ -0.07
SMAD3-208ENST00000558827 TRIM43BA6NCK2 446 aa14.6□□□□□ -0.07
SMAD3-208ENST00000558827 ASGR1P07306 291 aa14.6□□□□□ -0.07
SMAD3-208ENST00000558827 SLC35G1Q2M3R5 365 aa14.6□□□□□ -0.07
SMAD3-208ENST00000558827 FBXO11Q86XK2 927 aa14.6□□□□□ -0.07
SMAD3-208ENST00000558827 PPP1R13LQ8WUF5 828 aa14.6□□□□□ -0.07
SMAD3-208ENST00000558827 NUP133Q8WUM0 1156 aa14.6□□□□□ -0.07
SMAD3-208ENST00000558827 TRIM43Q96BQ3 446 aaPredicted RBP14.6□□□□□ -0.07
SMAD3-208ENST00000558827 TAAR1Q96RJ0 339 aa14.6□□□□□ -0.07
SMAD3-208ENST00000558827 LRRC2Q9BYS8 371 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms