RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 MDM2Q00987 491 aaPredicted RBP19.1■□□□□ 0.65
LDLR-206ENST00000557958 USP50Q70EL3 339 aaPredicted RBP19.1■□□□□ 0.65
LDLR-206ENST00000557958 KCTD1Q719H9 257 aa19.1■□□□□ 0.65
LDLR-206ENST00000557958 CCDC84Q86UT8 332 aaPredicted RBP19.1■□□□□ 0.65
LDLR-206ENST00000557958 MTMR8Q96EF0 704 aa19.1■□□□□ 0.65
LDLR-206ENST00000557958 EPSTI1Q96J88 318 aa19.1■□□□□ 0.65
LDLR-206ENST00000557958 ARHGEF10LQ9HCE6 1279 aa19.1■□□□□ 0.65
LDLR-206ENST00000557958 ZBTB21Q9ULJ3 1066 aa19.1■□□□□ 0.65
LDLR-206ENST00000557958 PCDHA5Q9Y5H7 936 aa19.1■□□□□ 0.65
LDLR-206ENST00000557958 ZC3H4Q9UPT8 1303 aaKnown RBP19.1■□□□□ 0.65
LDLR-206ENST00000557958 IQCA1LA6NCM1 817 aa19.09■□□□□ 0.65
LDLR-206ENST00000557958 ADAMTS3O15072 1205 aa19.09■□□□□ 0.65
LDLR-206ENST00000557958 MRPL12P52815 198 aaKnown RBP19.09■□□□□ 0.65
LDLR-206ENST00000557958 NT5DC1Q5TFE4 455 aa19.09■□□□□ 0.65
LDLR-206ENST00000557958 DCAF15Q66K64 600 aa19.09■□□□□ 0.65
LDLR-206ENST00000557958 CUL5Q93034 780 aa19.09■□□□□ 0.65
LDLR-206ENST00000557958 DHX58Q96C10 678 aa19.09■□□□□ 0.65
LDLR-206ENST00000557958 ZKSCAN5Q9Y2L8 839 aa19.09■□□□□ 0.65
LDLR-206ENST00000557958 IKBKBO14920 756 aa19.09■□□□□ 0.65
LDLR-206ENST00000557958 KRT26Q7Z3Y9 468 aa19.09■□□□□ 0.65
LDLR-206ENST00000557958 SIAH1Q8IUQ4 282 aa19.09■□□□□ 0.65
LDLR-206ENST00000557958 C4orf32Q8N8J7 132 aa19.09■□□□□ 0.65
LDLR-206ENST00000557958 TAF1DQ9H5J8 278 aaPredicted RBP19.09■□□□□ 0.65
LDLR-206ENST00000557958 RIC8AQ9NPQ8 531 aa19.09■□□□□ 0.65
LDLR-206ENST00000557958 PHF20L1A8MW92 1017 aa19.08■□□□□ 0.65
LDLR-206ENST00000557958 F5H6K3 240 aa19.08■□□□□ 0.65
LDLR-206ENST00000557958 ZNF75DP51815 510 aa19.08■□□□□ 0.65
LDLR-206ENST00000557958 KLRC3Q07444 240 aa19.08■□□□□ 0.65
LDLR-206ENST00000557958 ZYXQ15942 572 aaKnown RBP19.08■□□□□ 0.65
LDLR-206ENST00000557958 TTBK2Q6IQ55 1244 aa19.08■□□□□ 0.65
LDLR-206ENST00000557958 USP49Q70CQ1 688 aa19.08■□□□□ 0.65
LDLR-206ENST00000557958 PLA2G4DQ86XP0 818 aa19.08■□□□□ 0.65
LDLR-206ENST00000557958 COA7Q96BR5 231 aa19.08■□□□□ 0.65
LDLR-206ENST00000557958 AP5Z1O43299 807 aa19.07■□□□□ 0.64
LDLR-206ENST00000557958 NEMFO60524 1076 aa19.07■□□□□ 0.64
LDLR-206ENST00000557958 CCNT1O60563 726 aaKnown RBP19.07■□□□□ 0.64
LDLR-206ENST00000557958 CDC25BP30305 580 aa19.07■□□□□ 0.64
LDLR-206ENST00000557958 SLC16A2P36021 539 aa19.07■□□□□ 0.64
LDLR-206ENST00000557958 ECE1P42892 770 aa19.07■□□□□ 0.64
LDLR-206ENST00000557958 MAP3K10Q02779 954 aa19.07■□□□□ 0.64
LDLR-206ENST00000557958 LETM2Q2VYF4 491 aa19.07■□□□□ 0.64
LDLR-206ENST00000557958 SUPT20HL1Q3ZLR7 823 aa19.07■□□□□ 0.64
LDLR-206ENST00000557958 TBCKQ8TEA7 893 aa19.07■□□□□ 0.64
LDLR-206ENST00000557958 ZNF526Q8TF50 670 aaPredicted RBP19.07■□□□□ 0.64
LDLR-206ENST00000557958 HOOK2Q96ED9 719 aa19.07■□□□□ 0.64
LDLR-206ENST00000557958 AK8Q96MA6 479 aa19.07■□□□□ 0.64
LDLR-206ENST00000557958 ZNF341Q9BYN7 854 aa19.07■□□□□ 0.64
LDLR-206ENST00000557958 BIN2Q9UBW5 565 aaPredicted RBP19.07■□□□□ 0.64
LDLR-206ENST00000557958 PPP2R3BQ9Y5P8 575 aa19.07■□□□□ 0.64
LDLR-206ENST00000557958 PITPNM2Q9BZ72 1349 aa19.07■□□□□ 0.64
LDLR-206ENST00000557958 POTECB2RU33 542 aa19.07■□□□□ 0.64
LDLR-206ENST00000557958 USP17L10C9JJH3 530 aa19.07■□□□□ 0.64
LDLR-206ENST00000557958 OR52Z1P0C646 297 aa19.07■□□□□ 0.64
LDLR-206ENST00000557958 INPP5BP32019 993 aa19.07■□□□□ 0.64
LDLR-206ENST00000557958 DRC7Q8IY82 874 aa19.07■□□□□ 0.64
LDLR-206ENST00000557958 SPICE1Q8N0Z3 855 aa19.07■□□□□ 0.64
LDLR-206ENST00000557958 MLKLQ8NB16 471 aa19.07■□□□□ 0.64
LDLR-206ENST00000557958 ACER1Q8TDN7 264 aa19.07■□□□□ 0.64
LDLR-206ENST00000557958 ZKSCAN4Q969J2 545 aaPredicted RBP19.07■□□□□ 0.64
LDLR-206ENST00000557958 MRFAP1L1Q96HT8 127 aa19.07■□□□□ 0.64
LDLR-206ENST00000557958 WRNIP1Q96S55 665 aa19.07■□□□□ 0.64
LDLR-206ENST00000557958 NAP1L4Q99733 375 aaKnown RBP19.07■□□□□ 0.64
LDLR-206ENST00000557958 SH2D4AQ9H788 454 aa19.07■□□□□ 0.64
LDLR-206ENST00000557958 RRAGCQ9HB90 399 aa19.07■□□□□ 0.64
LDLR-206ENST00000557958 GOPCQ9HD26 462 aa19.07■□□□□ 0.64
LDLR-206ENST00000557958 A0A087WWV3 80 aa19.06■□□□□ 0.64
LDLR-206ENST00000557958 A0A1W2PRG0 241 aa19.06■□□□□ 0.64
LDLR-206ENST00000557958 ASNSP08243 561 aa19.06■□□□□ 0.64
LDLR-206ENST00000557958 TRAF1Q13077 416 aa19.06■□□□□ 0.64
LDLR-206ENST00000557958 IKQ13123 557 aaPredicted RBP19.06■□□□□ 0.64
LDLR-206ENST00000557958 JAKMIP3Q5VZ66 844 aa19.06■□□□□ 0.64
LDLR-206ENST00000557958 MCTP2Q6DN12 878 aa19.06■□□□□ 0.64
LDLR-206ENST00000557958 NDUFB10O96000 172 aa19.05■□□□□ 0.64
LDLR-206ENST00000557958 BMP3P12645 472 aa19.05■□□□□ 0.64
LDLR-206ENST00000557958 SARSP49591 514 aaKnown RBP19.05■□□□□ 0.64
LDLR-206ENST00000557958 MYL5Q02045 173 aa19.05■□□□□ 0.64
LDLR-206ENST00000557958 CT47A1Q5JQC4 288 aaPredicted RBP19.05■□□□□ 0.64
LDLR-206ENST00000557958 RASSF8Q8NHQ8 419 aa19.05■□□□□ 0.64
LDLR-206ENST00000557958 PSTPIP2Q9H939 334 aa19.05■□□□□ 0.64
LDLR-206ENST00000557958 UBA7P41226 1012 aa19.05■□□□□ 0.64
LDLR-206ENST00000557958 CDC37Q16543 378 aaPredicted RBP19.05■□□□□ 0.64
LDLR-206ENST00000557958 SPATA20Q8TB22 786 aa19.05■□□□□ 0.64
LDLR-206ENST00000557958 PAGE5Q96GU1 130 aa19.05■□□□□ 0.64
LDLR-206ENST00000557958 GSDMAQ96QA5 445 aa19.05■□□□□ 0.64
LDLR-206ENST00000557958 NUP88Q99567 741 aaPredicted RBP19.05■□□□□ 0.64
LDLR-206ENST00000557958 MAN1B1Q9UKM7 699 aa19.05■□□□□ 0.64
LDLR-206ENST00000557958 A0A087X0B3 334 aa19.04■□□□□ 0.64
LDLR-206ENST00000557958 FOXN1O15353 648 aa19.04■□□□□ 0.64
LDLR-206ENST00000557958 CTNND1O60716 968 aaKnown RBP19.04■□□□□ 0.64
LDLR-206ENST00000557958 POTEIP0CG38 1075 aa19.04■□□□□ 0.64
LDLR-206ENST00000557958 POTEJP0CG39 1038 aa19.04■□□□□ 0.64
LDLR-206ENST00000557958 IL17AQ16552 155 aa19.04■□□□□ 0.64
LDLR-206ENST00000557958 QRICH1Q2TAL8 776 aa19.04■□□□□ 0.64
LDLR-206ENST00000557958 SH3RF1Q7Z6J0 888 aa19.04■□□□□ 0.64
LDLR-206ENST00000557958 PNMA8AQ86V59 439 aaPredicted RBP19.04■□□□□ 0.64
LDLR-206ENST00000557958 FEZ1Q99689 392 aa19.04■□□□□ 0.64
LDLR-206ENST00000557958 GLIS2Q9BZE0 524 aaPredicted RBP19.04■□□□□ 0.64
LDLR-206ENST00000557958 PCDHA1Q9Y5I3 950 aa19.04■□□□□ 0.64
LDLR-206ENST00000557958 PPP1R11O60927 126 aaPredicted RBP19.03■□□□□ 0.64
LDLR-206ENST00000557958 MORC3Q14149 939 aa19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms