RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 CTAGE5O15320 804 aa16.68■□□□□ 0.26
SNHG1-213ENST00000540725 CDK7P50613 346 aa16.68■□□□□ 0.26
SNHG1-213ENST00000540725 TNFAIP2Q03169 654 aa16.68■□□□□ 0.26
SNHG1-213ENST00000540725 RRP12Q5JTH9 1297 aaKnown RBP16.68■□□□□ 0.26
SNHG1-213ENST00000540725 TICAM2Q86XR7 235 aa16.68■□□□□ 0.26
SNHG1-213ENST00000540725 LNPKQ9C0E8 428 aa16.68■□□□□ 0.26
SNHG1-213ENST00000540725 CYP39A1Q9NYL5 469 aa16.68■□□□□ 0.26
SNHG1-213ENST00000540725 LAMA4Q16363 1823 aa16.68■□□□□ 0.26
SNHG1-213ENST00000540725 ZMYM6O95789 1325 aa16.68■□□□□ 0.26
SNHG1-213ENST00000540725 EYSQ5T1H1 3165 aa16.67■□□□□ 0.26
SNHG1-213ENST00000540725 ARVCFO00192 962 aa16.67■□□□□ 0.26
SNHG1-213ENST00000540725 TIMP1P01033 207 aa16.67■□□□□ 0.26
SNHG1-213ENST00000540725 ICAM1P05362 532 aa16.67■□□□□ 0.26
SNHG1-213ENST00000540725 HSPD1P10809 573 aaKnown RBP16.67■□□□□ 0.26
SNHG1-213ENST00000540725 TOP1P11387 765 aaKnown RBP16.67■□□□□ 0.26
SNHG1-213ENST00000540725 NKX3-2P78367 333 aa16.67■□□□□ 0.26
SNHG1-213ENST00000540725 BEX3Q00994 111 aa16.67■□□□□ 0.26
SNHG1-213ENST00000540725 NMIQ13287 307 aaPredicted RBP16.67■□□□□ 0.26
SNHG1-213ENST00000540725 TTBK2Q6IQ55 1244 aa16.67■□□□□ 0.26
SNHG1-213ENST00000540725 NSMFQ6X4W1 530 aa16.67■□□□□ 0.26
SNHG1-213ENST00000540725 NOL8Q76FK4 1167 aaKnown RBP16.67■□□□□ 0.26
SNHG1-213ENST00000540725 ZNF589Q86UQ0 364 aaPredicted RBP16.67■□□□□ 0.26
SNHG1-213ENST00000540725 SEMA6BQ9H3T3 888 aa16.67■□□□□ 0.26
SNHG1-213ENST00000540725 DDX49Q9Y6V7 483 aaKnown RBP16.67■□□□□ 0.26
SNHG1-213ENST00000540725 PRUNE2Q8WUY3 3088 aa16.67■□□□□ 0.26
SNHG1-213ENST00000540725 TRIM6-TRIM34B2RNG4 842 aa16.66■□□□□ 0.26
SNHG1-213ENST00000540725 SLC16A2P36021 539 aa16.66■□□□□ 0.26
SNHG1-213ENST00000540725 HAND2P61296 217 aa16.66■□□□□ 0.26
SNHG1-213ENST00000540725 SYDE2Q5VT97 1194 aa16.66■□□□□ 0.26
SNHG1-213ENST00000540725 BTNL9Q6UXG8 535 aa16.66■□□□□ 0.26
SNHG1-213ENST00000540725 TLK2Q86UE8 772 aa16.66■□□□□ 0.26
SNHG1-213ENST00000540725 CDX2Q99626 313 aaPredicted RBP16.66■□□□□ 0.26
SNHG1-213ENST00000540725 TMEM47Q9BQJ4 181 aa16.66■□□□□ 0.26
SNHG1-213ENST00000540725 RANBP17Q9H2T7 1088 aaKnown RBP16.66■□□□□ 0.26
SNHG1-213ENST00000540725 TTYH1Q9H313 450 aaPredicted RBP16.66■□□□□ 0.26
SNHG1-213ENST00000540725 GNEQ9Y223 722 aaKnown RBP16.66■□□□□ 0.26
SNHG1-213ENST00000540725 CCDC171Q6TFL3 1326 aa16.66■□□□□ 0.26
SNHG1-213ENST00000540725 MYH6P13533 1939 aa16.66■□□□□ 0.26
SNHG1-213ENST00000540725 FBXO16Q8IX29 292 aaPredicted RBP16.65■□□□□ 0.26
SNHG1-213ENST00000540725 FAM126BQ8IXS8 530 aa16.65■□□□□ 0.26
SNHG1-213ENST00000540725 RILPL2Q969X0 211 aa16.65■□□□□ 0.26
SNHG1-213ENST00000540725 TCP11L1Q9NUJ3 509 aa16.65■□□□□ 0.26
SNHG1-213ENST00000540725 FRMPD2Q68DX3 1309 aaPredicted RBP16.65■□□□□ 0.26
SNHG1-213ENST00000540725 TLR3O15455 904 aaKnown RBP16.64■□□□□ 0.26
SNHG1-213ENST00000540725 SMPD1P17405 629 aa16.64■□□□□ 0.26
SNHG1-213ENST00000540725 PTGS1P23219 599 aa16.64■□□□□ 0.26
SNHG1-213ENST00000540725 AAMPQ13685 434 aa16.64■□□□□ 0.26
SNHG1-213ENST00000540725 FSCN1Q16658 493 aaKnown RBP16.64■□□□□ 0.26
SNHG1-213ENST00000540725 MFSD5Q6N075 450 aa16.64■□□□□ 0.26
SNHG1-213ENST00000540725 TAPT1Q6NXT6 567 aa16.64■□□□□ 0.26
SNHG1-213ENST00000540725 CXCL17Q6UXB2 119 aa16.64■□□□□ 0.26
SNHG1-213ENST00000540725 EEPD1Q7L9B9 569 aa16.64■□□□□ 0.26
SNHG1-213ENST00000540725 PURBQ96QR8 312 aaKnown RBP16.64■□□□□ 0.26
SNHG1-213ENST00000540725 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.64■□□□□ 0.261e-17■■■□□ 16.6
SNHG1-213ENST00000540725 AP5M1Q9H0R1 490 aa16.64■□□□□ 0.26
SNHG1-213ENST00000540725 GPCPD1Q9NPB8 672 aa16.64■□□□□ 0.26
SNHG1-213ENST00000540725 PDGFCQ9NRA1 345 aa16.64■□□□□ 0.26
SNHG1-213ENST00000540725 TTC28Q96AY4 2481 aa16.64■□□□□ 0.25
SNHG1-213ENST00000540725 TMEM265A0A087WTH1 108 aa16.64■□□□□ 0.25
SNHG1-213ENST00000540725 DYNC1LI2O43237 492 aaPredicted RBP16.64■□□□□ 0.25
SNHG1-213ENST00000540725 PPIGQ13427 754 aaKnown RBP eCLIP16.64■□□□□ 0.25
SNHG1-213ENST00000540725 AKNAD1Q5T1N1 836 aa16.64■□□□□ 0.25
SNHG1-213ENST00000540725 IQSEC1Q6DN90 963 aa16.64■□□□□ 0.25
SNHG1-213ENST00000540725 MFSD6Q6ZSS7 791 aa16.64■□□□□ 0.25
SNHG1-213ENST00000540725 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.64■□□□□ 0.25
SNHG1-213ENST00000540725 SMC5Q8IY18 1101 aa16.64■□□□□ 0.25
SNHG1-213ENST00000540725 MORC4Q8TE76 937 aa16.64■□□□□ 0.25
SNHG1-213ENST00000540725 MYLIPQ8WY64 445 aa16.64■□□□□ 0.25
SNHG1-213ENST00000540725 PPP1R12CQ9BZL4 782 aa16.64■□□□□ 0.25
SNHG1-213ENST00000540725 VTA1Q9NP79 307 aa16.64■□□□□ 0.25
SNHG1-213ENST00000540725 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.63■□□□□ 0.25
SNHG1-213ENST00000540725 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.63■□□□□ 0.25
SNHG1-213ENST00000540725 NFIBO00712 420 aa16.63■□□□□ 0.25
SNHG1-213ENST00000540725 CABYRO75952 493 aa16.63■□□□□ 0.25
SNHG1-213ENST00000540725 PDHBP11177 359 aa16.63■□□□□ 0.25
SNHG1-213ENST00000540725 PCP11498 1178 aaKnown RBP16.63■□□□□ 0.25
SNHG1-213ENST00000540725 BAATQ14032 418 aaPredicted RBP16.63■□□□□ 0.25
SNHG1-213ENST00000540725 B4GALNT3Q6L9W6 998 aa16.63■□□□□ 0.25
SNHG1-213ENST00000540725 TBC1D10CQ8IV04 446 aa16.63■□□□□ 0.25
SNHG1-213ENST00000540725 SLC43A3Q8NBI5 491 aa16.63■□□□□ 0.25
SNHG1-213ENST00000540725 RWDD1Q9H446 243 aaPredicted RBP16.63■□□□□ 0.25
SNHG1-213ENST00000540725 ADD3Q9UEY8 706 aaKnown RBP16.63■□□□□ 0.25
SNHG1-213ENST00000540725 Q9Y3F1 56 aa16.63■□□□□ 0.25
SNHG1-213ENST00000540725 GBF1Q92538 1859 aa16.62■□□□□ 0.25
SNHG1-213ENST00000540725 ZEB2O60315 1214 aa16.62■□□□□ 0.25
SNHG1-213ENST00000540725 CD4P01730 458 aa16.62■□□□□ 0.25
SNHG1-213ENST00000540725 CSF2RAP15509 400 aa16.62■□□□□ 0.25
SNHG1-213ENST00000540725 SDSP20132 328 aa16.62■□□□□ 0.25
SNHG1-213ENST00000540725 ALDH5A1P51649 535 aaPredicted RBP16.62■□□□□ 0.25
SNHG1-213ENST00000540725 MFAP1P55081 439 aaKnown RBP16.62■□□□□ 0.25
SNHG1-213ENST00000540725 ZNF543Q08ER8 600 aa16.62■□□□□ 0.25
SNHG1-213ENST00000540725 TMEM240Q5SV17 173 aa16.62■□□□□ 0.25
SNHG1-213ENST00000540725 TMEM63BQ5T3F8 832 aa16.62■□□□□ 0.25
SNHG1-213ENST00000540725 KIAA1211Q6ZU35 1233 aa16.62■□□□□ 0.25
SNHG1-213ENST00000540725 C16orf59Q7L2K0 433 aa16.62■□□□□ 0.25
SNHG1-213ENST00000540725 TMEM199Q8N511 208 aa16.62■□□□□ 0.25
SNHG1-213ENST00000540725 MAFAQ8NHW3 353 aaPredicted RBP16.62■□□□□ 0.25
SNHG1-213ENST00000540725 TTC14Q96N46 770 aa16.62■□□□□ 0.25
SNHG1-213ENST00000540725 RNF41Q9H4P4 317 aaPredicted RBP16.62■□□□□ 0.25
SNHG1-213ENST00000540725 LOC102724159A0A0B4J2E5 919 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms