RNA–Protein interactions for RNA: ENST00000484733.6

SCFD1-206, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 2,308 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-206ENST00000484733 LNPKQ9C0E8 428 aa13.52□□□□□ -0.25
SCFD1-206ENST00000484733 TBX21Q9UL17 535 aa13.52□□□□□ -0.25
SCFD1-206ENST00000484733 GNEQ9Y223 722 aaKnown RBP13.52□□□□□ -0.25
SCFD1-206ENST00000484733 ARVCFO00192 962 aa13.51□□□□□ -0.25
SCFD1-206ENST00000484733 TIMP1P01033 207 aa13.51□□□□□ -0.25
SCFD1-206ENST00000484733 TNFAIP2Q03169 654 aa13.51□□□□□ -0.25
SCFD1-206ENST00000484733 CCDC96Q2M329 555 aa13.51□□□□□ -0.25
SCFD1-206ENST00000484733 ZNF697Q5TEC3 545 aa13.51□□□□□ -0.25
SCFD1-206ENST00000484733 SYDE2Q5VT97 1194 aa13.51□□□□□ -0.25
SCFD1-206ENST00000484733 IQSEC1Q6DN90 963 aa13.51□□□□□ -0.25
SCFD1-206ENST00000484733 GUCD1Q96NT3 240 aa13.51□□□□□ -0.25
SCFD1-206ENST00000484733 CCPG1Q9ULG6 757 aa13.51□□□□□ -0.25
SCFD1-206ENST00000484733 LCTP09848 1927 aa13.51□□□□□ -0.25
SCFD1-206ENST00000484733 CABYRO75952 493 aa13.51□□□□□ -0.25
SCFD1-206ENST00000484733 SDSP20132 328 aa13.51□□□□□ -0.25
SCFD1-206ENST00000484733 NUCB1Q02818 461 aa13.51□□□□□ -0.25
SCFD1-206ENST00000484733 FPGSQ05932 587 aa13.51□□□□□ -0.25
SCFD1-206ENST00000484733 GNASQ5JWF2 1037 aa13.51□□□□□ -0.25
SCFD1-206ENST00000484733 AKNAD1Q5T1N1 836 aa13.51□□□□□ -0.25
SCFD1-206ENST00000484733 CHD1LQ86WJ1 897 aa13.51□□□□□ -0.25
SCFD1-206ENST00000484733 PLEKHM2Q8IWE5 1019 aa13.51□□□□□ -0.25
SCFD1-206ENST00000484733 RNF41Q9H4P4 317 aaPredicted RBP13.51□□□□□ -0.25
SCFD1-206ENST00000484733 ASTN1O14525 1302 aa13.5□□□□□ -0.25
SCFD1-206ENST00000484733 TMEM265A0A087WTH1 108 aa13.5□□□□□ -0.25
SCFD1-206ENST00000484733 TRIM6-TRIM34B2RNG4 842 aa13.5□□□□□ -0.25
SCFD1-206ENST00000484733 SNHG28P0DPA3 235 aa13.5□□□□□ -0.25
SCFD1-206ENST00000484733 EPHB4P54760 987 aa13.5□□□□□ -0.25
SCFD1-206ENST00000484733 SNAP25P60880 206 aa13.5□□□□□ -0.25
SCFD1-206ENST00000484733 IRX5P78411 483 aaPredicted RBP13.5□□□□□ -0.25
SCFD1-206ENST00000484733 RRP12Q5JTH9 1297 aaKnown RBP13.5□□□□□ -0.25
SCFD1-206ENST00000484733 TTBK2Q6IQ55 1244 aa13.5□□□□□ -0.25
SCFD1-206ENST00000484733 TAPT1Q6NXT6 567 aa13.5□□□□□ -0.25
SCFD1-206ENST00000484733 MFSD6Q6ZSS7 791 aa13.5□□□□□ -0.25
SCFD1-206ENST00000484733 RASGRP2Q7LDG7 609 aa13.5□□□□□ -0.25
SCFD1-206ENST00000484733 SLC43A3Q8NBI5 491 aa13.5□□□□□ -0.25
SCFD1-206ENST00000484733 VTA1Q9NP79 307 aa13.5□□□□□ -0.25
SCFD1-206ENST00000484733 TOMM22Q9NS69 142 aa13.5□□□□□ -0.25
SCFD1-206ENST00000484733 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.5□□□□□ -0.25
SCFD1-206ENST00000484733 PDHBP11177 359 aa13.5□□□□□ -0.25
SCFD1-206ENST00000484733 RILPL2Q969X0 211 aa13.5□□□□□ -0.25
SCFD1-206ENST00000484733 MAF1Q9H063 256 aa13.5□□□□□ -0.25
SCFD1-206ENST00000484733 TLR3O15455 904 aaKnown RBP13.49□□□□□ -0.25
SCFD1-206ENST00000484733 ZNF543Q08ER8 600 aa13.49□□□□□ -0.25
SCFD1-206ENST00000484733 CCDC178Q5BJE1 867 aa13.49□□□□□ -0.25
SCFD1-206ENST00000484733 MFSD5Q6N075 450 aa13.49□□□□□ -0.25
SCFD1-206ENST00000484733 FAM126BQ8IXS8 530 aa13.49□□□□□ -0.25
SCFD1-206ENST00000484733 CHMP4CQ96CF2 233 aa13.49□□□□□ -0.25
SCFD1-206ENST00000484733 AP5M1Q9H0R1 490 aa13.49□□□□□ -0.25
SCFD1-206ENST00000484733 SEMA6BQ9H3T3 888 aa13.49□□□□□ -0.25
SCFD1-206ENST00000484733 ADD3Q9UEY8 706 aaKnown RBP13.49□□□□□ -0.25
SCFD1-206ENST00000484733 LAMA4Q16363 1823 aa13.49□□□□□ -0.25
SCFD1-206ENST00000484733 ZEB2O60315 1214 aa13.48□□□□□ -0.25
SCFD1-206ENST00000484733 CD4P01730 458 aa13.48□□□□□ -0.25
SCFD1-206ENST00000484733 IGHDP01880 384 aa13.48□□□□□ -0.25
SCFD1-206ENST00000484733 SMPD1P17405 629 aa13.48□□□□□ -0.25
SCFD1-206ENST00000484733 SLC16A2P36021 539 aa13.48□□□□□ -0.25
SCFD1-206ENST00000484733 WDR19Q8NEZ3 1342 aa13.48□□□□□ -0.25
SCFD1-206ENST00000484733 RBM47A0AV96 593 aaKnown RBP13.48□□□□□ -0.25
SCFD1-206ENST00000484733 HIP1O00291 1037 aa13.48□□□□□ -0.25
SCFD1-206ENST00000484733 HAND2P61296 217 aa13.48□□□□□ -0.25
SCFD1-206ENST00000484733 PPIGQ13427 754 aaKnown RBP eCLIP13.48□□□□□ -0.257e-8■■□□□ 12.4
SCFD1-206ENST00000484733 NSMFQ6X4W1 530 aa13.48□□□□□ -0.25
SCFD1-206ENST00000484733 TLK2Q86UE8 772 aa13.48□□□□□ -0.25
SCFD1-206ENST00000484733 DGKHQ86XP1 1220 aa13.48□□□□□ -0.25
SCFD1-206ENST00000484733 TBC1D10CQ8IV04 446 aa13.48□□□□□ -0.25
SCFD1-206ENST00000484733 ESR2Q92731 530 aa13.48□□□□□ -0.25
SCFD1-206ENST00000484733 VTI1AQ96AJ9 217 aa13.48□□□□□ -0.25
SCFD1-206ENST00000484733 RNPC3Q96LT9 517 aaKnown RBP13.48□□□□□ -0.25
SCFD1-206ENST00000484733 GPCPD1Q9NPB8 672 aa13.48□□□□□ -0.25
SCFD1-206ENST00000484733 MTMR7Q9Y216 660 aa13.48□□□□□ -0.25
SCFD1-206ENST00000484733 DNAH12Q6ZR08 3092 aa13.47□□□□□ -0.25
SCFD1-206ENST00000484733 BAATQ14032 418 aaPredicted RBP13.47□□□□□ -0.25
SCFD1-206ENST00000484733 FSCN1Q16658 493 aaKnown RBP13.47□□□□□ -0.25
SCFD1-206ENST00000484733 B4GALNT3Q6L9W6 998 aa13.47□□□□□ -0.25
SCFD1-206ENST00000484733 CLEC4DQ8WXI8 215 aa13.47□□□□□ -0.25
SCFD1-206ENST00000484733 ANKS1AQ92625 1134 aa13.47□□□□□ -0.25
SCFD1-206ENST00000484733 FRMPD2Q68DX3 1309 aaPredicted RBP13.47□□□□□ -0.25
SCFD1-206ENST00000484733 DLL1O00548 723 aa13.47□□□□□ -0.25
SCFD1-206ENST00000484733 ZNF213O14771 459 aa13.47□□□□□ -0.25
SCFD1-206ENST00000484733 ALDH5A1P51649 535 aaPredicted RBP13.47□□□□□ -0.25
SCFD1-206ENST00000484733 BEX3Q00994 111 aa13.47□□□□□ -0.25
SCFD1-206ENST00000484733 GPATCH4Q5T3I0 446 aaKnown RBP13.47□□□□□ -0.25
SCFD1-206ENST00000484733 RGS22Q8NE09 1264 aa13.47□□□□□ -0.25
SCFD1-206ENST00000484733 PDGFCQ9NRA1 345 aa13.47□□□□□ -0.25
SCFD1-206ENST00000484733 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.46□□□□□ -0.25
SCFD1-206ENST00000484733 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.46□□□□□ -0.25
SCFD1-206ENST00000484733 NFIBO00712 420 aa13.46□□□□□ -0.25
SCFD1-206ENST00000484733 DYNC1LI2O43237 492 aaPredicted RBP13.46□□□□□ -0.25
SCFD1-206ENST00000484733 DUSP28Q4G0W2 176 aa13.46□□□□□ -0.25
SCFD1-206ENST00000484733 RASIP1Q5U651 963 aa13.46□□□□□ -0.25
SCFD1-206ENST00000484733 NOL8Q76FK4 1167 aaKnown RBP13.46□□□□□ -0.25
SCFD1-206ENST00000484733 FBXO16Q8IX29 292 aaPredicted RBP13.46□□□□□ -0.25
SCFD1-206ENST00000484733 TMEM199Q8N511 208 aa13.46□□□□□ -0.25
SCFD1-206ENST00000484733 CDX2Q99626 313 aaPredicted RBP13.46□□□□□ -0.25
SCFD1-206ENST00000484733 DSCC1Q9BVC3 393 aa13.46□□□□□ -0.25
SCFD1-206ENST00000484733 TTYH1Q9H313 450 aaPredicted RBP13.46□□□□□ -0.26
SCFD1-206ENST00000484733 NEDD4P46934 1319 aa13.46□□□□□ -0.26
SCFD1-206ENST00000484733 ITGA7Q13683 1181 aa13.45□□□□□ -0.26
SCFD1-206ENST00000484733 TMEM240Q5SV17 173 aa13.45□□□□□ -0.26
SCFD1-206ENST00000484733 CXCL17Q6UXB2 119 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 123 ms