RNA–Protein interactions for RNA: ENST00000477052.1

VARS2-208, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 3

Gene VARS2, Length 552 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-208ENST00000477052 TNFAIP2Q03169 654 aa13.78□□□□□ -0.2
VARS2-208ENST00000477052 FPGSQ05932 587 aa13.78□□□□□ -0.2
VARS2-208ENST00000477052 ALX1Q15699 326 aa13.78□□□□□ -0.2
VARS2-208ENST00000477052 FAM109BQ6ICB4 259 aaPredicted RBP13.78□□□□□ -0.2
VARS2-208ENST00000477052 CXCL17Q6UXB2 119 aa13.78□□□□□ -0.2
VARS2-208ENST00000477052 ANKRD33Q7Z3H0 272 aa13.78□□□□□ -0.2
VARS2-208ENST00000477052 TBC1D10CQ8IV04 446 aa13.78□□□□□ -0.2
VARS2-208ENST00000477052 GLT1D1Q96MS3 346 aa13.78□□□□□ -0.2
VARS2-208ENST00000477052 PPP1R12CQ9BZL4 782 aa13.78□□□□□ -0.2
VARS2-208ENST00000477052 UPF3AQ9H1J1 476 aaKnown RBP13.78□□□□□ -0.2
VARS2-208ENST00000477052 SEMA6BQ9H3T3 888 aa13.78□□□□□ -0.2
VARS2-208ENST00000477052 CYP39A1Q9NYL5 469 aa13.78□□□□□ -0.2
VARS2-208ENST00000477052 NFIBO00712 420 aa13.77□□□□□ -0.21
VARS2-208ENST00000477052 SMPD1P17405 629 aa13.77□□□□□ -0.21
VARS2-208ENST00000477052 CST5P28325 142 aaPredicted RBP13.77□□□□□ -0.21
VARS2-208ENST00000477052 CDK7P50613 346 aa13.77□□□□□ -0.21
VARS2-208ENST00000477052 BAATQ14032 418 aaPredicted RBP13.77□□□□□ -0.21
VARS2-208ENST00000477052 DCAF4Q8WV16 495 aa13.77□□□□□ -0.21
VARS2-208ENST00000477052 MYLIPQ8WY64 445 aa13.77□□□□□ -0.21
VARS2-208ENST00000477052 ZKSCAN3Q9BRR0 538 aa13.77□□□□□ -0.21
VARS2-208ENST00000477052 CPVLQ9H3G5 476 aa13.77□□□□□ -0.21
VARS2-208ENST00000477052 SPC25Q9HBM1 224 aa13.77□□□□□ -0.21
VARS2-208ENST00000477052 TBX21Q9UL17 535 aa13.77□□□□□ -0.21
VARS2-208ENST00000477052 LCTP09848 1927 aa13.76□□□□□ -0.21
VARS2-208ENST00000477052 ARVCFO00192 962 aa13.76□□□□□ -0.21
VARS2-208ENST00000477052 DYNC1LI2O43237 492 aaPredicted RBP13.76□□□□□ -0.21
VARS2-208ENST00000477052 PLA2G6O60733 806 aa13.76□□□□□ -0.21
VARS2-208ENST00000477052 TIMP1P01033 207 aa13.76□□□□□ -0.21
VARS2-208ENST00000477052 FGRP09769 529 aa13.76□□□□□ -0.21
VARS2-208ENST00000477052 FDX1P10109 184 aa13.76□□□□□ -0.21
VARS2-208ENST00000477052 ACRP10323 421 aa13.76□□□□□ -0.21
VARS2-208ENST00000477052 NOVP48745 357 aa13.76□□□□□ -0.21
VARS2-208ENST00000477052 PSMC6P62333 389 aa13.76□□□□□ -0.21
VARS2-208ENST00000477052 TKFCQ3LXA3 575 aa13.76□□□□□ -0.21
VARS2-208ENST00000477052 SYDE2Q5VT97 1194 aa13.76□□□□□ -0.21
VARS2-208ENST00000477052 TAPT1Q6NXT6 567 aa13.76□□□□□ -0.21
VARS2-208ENST00000477052 C16orf59Q7L2K0 433 aa13.76□□□□□ -0.21
VARS2-208ENST00000477052 TLK2Q86UE8 772 aa13.76□□□□□ -0.21
VARS2-208ENST00000477052 PCSK9Q8NBP7 692 aaKnown RBP13.76□□□□□ -0.21
VARS2-208ENST00000477052 EXOC6Q8TAG9 804 aa13.76□□□□□ -0.21
VARS2-208ENST00000477052 PPP1R13LQ8WUF5 828 aa13.76□□□□□ -0.21
VARS2-208ENST00000477052 TOX2Q96NM4 488 aa13.76□□□□□ -0.21
VARS2-208ENST00000477052 RANBP17Q9H2T7 1088 aaKnown RBP13.76□□□□□ -0.21
VARS2-208ENST00000477052 LRRC37A2A6NM11 1700 aa13.76□□□□□ -0.21
VARS2-208ENST00000477052 ELP1O95163 1332 aa13.75□□□□□ -0.21
VARS2-208ENST00000477052 NEDD4P46934 1319 aa13.75□□□□□ -0.21
VARS2-208ENST00000477052 UMODL1Q5DID0 1318 aa13.75□□□□□ -0.21
VARS2-208ENST00000477052 CCDC171Q6TFL3 1326 aa13.75□□□□□ -0.21
VARS2-208ENST00000477052 UNC80Q8N2C7 3258 aa13.75□□□□□ -0.21
VARS2-208ENST00000477052 A0A0U1RQG5 324 aaPredicted RBP13.75□□□□□ -0.21
VARS2-208ENST00000477052 ASB14A6NK59 587 aa13.75□□□□□ -0.21
VARS2-208ENST00000477052 GRXCR1A8MXD5 290 aa13.75□□□□□ -0.21
VARS2-208ENST00000477052 ICAM1P05362 532 aa13.75□□□□□ -0.21
VARS2-208ENST00000477052 GOLGA8HP0CJ92 632 aa13.75□□□□□ -0.21
VARS2-208ENST00000477052 TOP1P11387 765 aaKnown RBP13.75□□□□□ -0.21
VARS2-208ENST00000477052 CSF2RAP15509 400 aa13.75□□□□□ -0.21
VARS2-208ENST00000477052 SDSP20132 328 aa13.75□□□□□ -0.21
VARS2-208ENST00000477052 CYP2C18P33260 490 aa13.75□□□□□ -0.21
VARS2-208ENST00000477052 SMAD3P84022 425 aaKnown RBP13.75□□□□□ -0.21
VARS2-208ENST00000477052 SLC30A10Q6XR72 485 aa13.75□□□□□ -0.21
VARS2-208ENST00000477052 PLEKHM2Q8IWE5 1019 aa13.75□□□□□ -0.21
VARS2-208ENST00000477052 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.75□□□□□ -0.21
VARS2-208ENST00000477052 GNEQ9Y223 722 aaKnown RBP13.75□□□□□ -0.21
VARS2-208ENST00000477052 EYSQ5T1H1 3165 aa13.75□□□□□ -0.21
VARS2-208ENST00000477052 GRIN2DO15399 1336 aa13.74□□□□□ -0.21
VARS2-208ENST00000477052 PTPDC1A2A3K4 754 aa13.74□□□□□ -0.21
VARS2-208ENST00000477052 RBAK-RBAKDNI3L0D1 243 aa13.74□□□□□ -0.21
VARS2-208ENST00000477052 PDHBP11177 359 aa13.74□□□□□ -0.21
VARS2-208ENST00000477052 CALML3P27482 149 aa13.74□□□□□ -0.21
VARS2-208ENST00000477052 FSCN1Q16658 493 aaKnown RBP13.74□□□□□ -0.21
VARS2-208ENST00000477052 PPP4R3BQ5MIZ7 849 aa13.74□□□□□ -0.21
VARS2-208ENST00000477052 KIAA1211Q6ZU35 1233 aa13.74□□□□□ -0.21
VARS2-208ENST00000477052 FAM126BQ8IXS8 530 aa13.74□□□□□ -0.21
VARS2-208ENST00000477052 SMC5Q8IY18 1101 aa13.74□□□□□ -0.21
VARS2-208ENST00000477052 UBA5Q9GZZ9 404 aa13.74□□□□□ -0.21
VARS2-208ENST00000477052 AP5M1Q9H0R1 490 aa13.74□□□□□ -0.21
VARS2-208ENST00000477052 TRPV6Q9H1D0 765 aa13.74□□□□□ -0.21
VARS2-208ENST00000477052 CDH23Q9H251 3354 aa13.74□□□□□ -0.21
VARS2-208ENST00000477052 PBX2P40425 430 aa13.73□□□□□ -0.21
VARS2-208ENST00000477052 TMEM240Q5SV17 173 aa13.73□□□□□ -0.21
VARS2-208ENST00000477052 AKNAD1Q5T1N1 836 aa13.73□□□□□ -0.21
VARS2-208ENST00000477052 MFSD5Q6N075 450 aa13.73□□□□□ -0.21
VARS2-208ENST00000477052 CWC27Q6UX04 472 aaKnown RBP13.73□□□□□ -0.21
VARS2-208ENST00000477052 BTNL9Q6UXG8 535 aa13.73□□□□□ -0.21
VARS2-208ENST00000477052 MFSD6Q6ZSS7 791 aa13.73□□□□□ -0.21
VARS2-208ENST00000477052 CHD1LQ86WJ1 897 aa13.73□□□□□ -0.21
VARS2-208ENST00000477052 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.73□□□□□ -0.21
VARS2-208ENST00000477052 MAFAQ8NHW3 353 aaPredicted RBP13.73□□□□□ -0.21
VARS2-208ENST00000477052 CLEC4DQ8WXI8 215 aa13.73□□□□□ -0.21
VARS2-208ENST00000477052 TCP11L1Q9NUJ3 509 aa13.73□□□□□ -0.21
VARS2-208ENST00000477052 CD4P01730 458 aa13.72□□□□□ -0.21
VARS2-208ENST00000477052 ALDH5A1P51649 535 aaPredicted RBP13.72□□□□□ -0.21
VARS2-208ENST00000477052 CCL23P55773 120 aa13.72□□□□□ -0.21
VARS2-208ENST00000477052 ZNF543Q08ER8 600 aa13.72□□□□□ -0.21
VARS2-208ENST00000477052 ITGA7Q13683 1181 aa13.72□□□□□ -0.21
VARS2-208ENST00000477052 GRIN2CQ14957 1233 aa13.72□□□□□ -0.21
VARS2-208ENST00000477052 USH1GQ495M9 461 aa13.72□□□□□ -0.21
VARS2-208ENST00000477052 IQSEC1Q6DN90 963 aa13.72□□□□□ -0.21
VARS2-208ENST00000477052 ZNF365Q70YC5 407 aa13.72□□□□□ -0.21
VARS2-208ENST00000477052 RWDD1Q9H446 243 aaPredicted RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms