RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 GREM2Q9H772 168 aa11.05□□□□□ -0.64
PTCHD4-202ENST00000398738 ESYT3A0FGR9 886 aa11.05□□□□□ -0.64
PTCHD4-202ENST00000398738 ITGA6P23229 1130 aa11.05□□□□□ -0.64
PTCHD4-202ENST00000398738 PRCPP42785 496 aa11.05□□□□□ -0.64
PTCHD4-202ENST00000398738 CCNI2Q6ZMN8 369 aaPredicted RBP11.05□□□□□ -0.64
PTCHD4-202ENST00000398738 PIK3AP1Q6ZUJ8 805 aa11.05□□□□□ -0.64
PTCHD4-202ENST00000398738 TRIM47Q96LD4 638 aa11.05□□□□□ -0.64
PTCHD4-202ENST00000398738 ZBED2Q9BTP6 218 aa11.05□□□□□ -0.64
PTCHD4-202ENST00000398738 FOXP1Q9H334 677 aaPredicted RBP11.05□□□□□ -0.64
PTCHD4-202ENST00000398738 A0A0G2JS52 829 aa11.04□□□□□ -0.64
PTCHD4-202ENST00000398738 KRT86O43790 486 aa11.04□□□□□ -0.64
PTCHD4-202ENST00000398738 KRT14P02533 472 aa11.04□□□□□ -0.64
PTCHD4-202ENST00000398738 PARP1P09874 1014 aaKnown RBP11.04□□□□□ -0.64
PTCHD4-202ENST00000398738 ENOX2Q16206 610 aaKnown RBP11.04□□□□□ -0.64
PTCHD4-202ENST00000398738 AKNAD1Q5T1N1 836 aa11.04□□□□□ -0.64
PTCHD4-202ENST00000398738 CCDC70Q6NSX1 233 aa11.04□□□□□ -0.64
PTCHD4-202ENST00000398738 KRT28Q7Z3Y7 464 aa11.04□□□□□ -0.64
PTCHD4-202ENST00000398738 ZNF654Q8IZM8 581 aa11.04□□□□□ -0.64
PTCHD4-202ENST00000398738 SDR42E1Q8WUS8 393 aa11.04□□□□□ -0.64
PTCHD4-202ENST00000398738 BRMS1Q9HCU9 246 aa11.04□□□□□ -0.64
PTCHD4-202ENST00000398738 LAMA4Q16363 1823 aa11.04□□□□□ -0.64
PTCHD4-202ENST00000398738 CYP2D7A0A087X1C5 515 aa11.04□□□□□ -0.64
PTCHD4-202ENST00000398738 KIAA0754O94854 1291 aa11.04□□□□□ -0.64
PTCHD4-202ENST00000398738 MAP2K2P36507 400 aa11.04□□□□□ -0.64
PTCHD4-202ENST00000398738 PMS1P54277 932 aaKnown RBP11.04□□□□□ -0.64
PTCHD4-202ENST00000398738 CCDC181Q5TID7 509 aa11.04□□□□□ -0.64
PTCHD4-202ENST00000398738 OTUD6BQ8N6M0 293 aa11.04□□□□□ -0.64
PTCHD4-202ENST00000398738 CCDC51Q96ER9 411 aa11.04□□□□□ -0.64
PTCHD4-202ENST00000398738 GSDMAQ96QA5 445 aa11.04□□□□□ -0.64
PTCHD4-202ENST00000398738 MLXIPQ9HAP2 919 aa11.04□□□□□ -0.64
PTCHD4-202ENST00000398738 ZNHIT6Q9NWK9 470 aaKnown RBP11.04□□□□□ -0.64
PTCHD4-202ENST00000398738 GEMIN8Q9NWZ8 242 aaKnown RBP11.04□□□□□ -0.64
PTCHD4-202ENST00000398738 NCK2O43639 380 aa11.03□□□□□ -0.64
PTCHD4-202ENST00000398738 PLEKHA8P1O95397 391 aa11.03□□□□□ -0.64
PTCHD4-202ENST00000398738 PLEKP08567 350 aaPredicted RBP11.03□□□□□ -0.64
PTCHD4-202ENST00000398738 GUCY2FP51841 1108 aa11.03□□□□□ -0.64
PTCHD4-202ENST00000398738 DCAF5Q96JK2 942 aa11.03□□□□□ -0.64
PTCHD4-202ENST00000398738 HAUS4Q9H6D7 363 aa11.03□□□□□ -0.64
PTCHD4-202ENST00000398738 LRWD1Q9UFC0 647 aa11.03□□□□□ -0.64
PTCHD4-202ENST00000398738 ABCF2Q9UG63 623 aa11.03□□□□□ -0.64
PTCHD4-202ENST00000398738 KDM6AO15550 1401 aaPredicted RBP11.03□□□□□ -0.64
PTCHD4-202ENST00000398738 XDHP47989 1333 aa11.03□□□□□ -0.64
PTCHD4-202ENST00000398738 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.03□□□□□ -0.64
PTCHD4-202ENST00000398738 PP2D1A8MPX8 630 aa11.03□□□□□ -0.64
PTCHD4-202ENST00000398738 TUBBP07437 444 aa11.03□□□□□ -0.64
PTCHD4-202ENST00000398738 APBA1Q02410 837 aa11.03□□□□□ -0.64
PTCHD4-202ENST00000398738 CCDC91Q7Z6B0 441 aa11.03□□□□□ -0.64
PTCHD4-202ENST00000398738 SHISA4Q96DD7 197 aa11.03□□□□□ -0.64
PTCHD4-202ENST00000398738 MAGEC2Q9UBF1 373 aaPredicted RBP11.03□□□□□ -0.64
PTCHD4-202ENST00000398738 FAM170AA1A519 330 aa11.03□□□□□ -0.64
PTCHD4-202ENST00000398738 BACH1O14867 736 aa11.03□□□□□ -0.64
PTCHD4-202ENST00000398738 XBP1P17861 261 aa11.03□□□□□ -0.64
PTCHD4-202ENST00000398738 KRT2P35908 639 aa11.03□□□□□ -0.64
PTCHD4-202ENST00000398738 TUBB4BP68371 445 aa11.03□□□□□ -0.64
PTCHD4-202ENST00000398738 PTPROQ16827 1216 aa11.03□□□□□ -0.64
PTCHD4-202ENST00000398738 TTC38Q5R3I4 469 aa11.03□□□□□ -0.64
PTCHD4-202ENST00000398738 SGMS1Q86VZ5 419 aa11.03□□□□□ -0.64
PTCHD4-202ENST00000398738 SPATA20Q8TB22 786 aa11.03□□□□□ -0.64
PTCHD4-202ENST00000398738 C6orf229H3BNL8 230 aa11.02□□□□□ -0.64
PTCHD4-202ENST00000398738 CIAO1O76071 339 aa11.02□□□□□ -0.64
PTCHD4-202ENST00000398738 MOCS3O95396 460 aa11.02□□□□□ -0.64
PTCHD4-202ENST00000398738 VEGFAP15692 232 aaPredicted RBP11.02□□□□□ -0.64
PTCHD4-202ENST00000398738 MCM3P25205 808 aa11.02□□□□□ -0.64
PTCHD4-202ENST00000398738 HPDP32754 393 aaPredicted RBP11.02□□□□□ -0.64
PTCHD4-202ENST00000398738 SEC24CP53992 1094 aa11.02□□□□□ -0.64
PTCHD4-202ENST00000398738 GUCY1A3Q02108 690 aa11.02□□□□□ -0.64
PTCHD4-202ENST00000398738 TBC1D8BQ0IIM8 1120 aa11.02□□□□□ -0.64
PTCHD4-202ENST00000398738 KIF5AQ12840 1032 aa11.02□□□□□ -0.64
PTCHD4-202ENST00000398738 PPFIA1Q13136 1202 aa11.02□□□□□ -0.64
PTCHD4-202ENST00000398738 NFRKBQ6P4R8 1299 aa11.02□□□□□ -0.64
PTCHD4-202ENST00000398738 WDR59Q6PJI9 974 aa11.02□□□□□ -0.64
PTCHD4-202ENST00000398738 LCORLQ8N3X6 602 aa11.02□□□□□ -0.64
PTCHD4-202ENST00000398738 TSEN2Q8NCE0 465 aaKnown RBP11.02□□□□□ -0.64
PTCHD4-202ENST00000398738 RASGRP4Q8TDF6 673 aa11.02□□□□□ -0.64
PTCHD4-202ENST00000398738 MTRQ99707 1265 aa11.02□□□□□ -0.64
PTCHD4-202ENST00000398738 CD248Q9HCU0 757 aa11.02□□□□□ -0.64
PTCHD4-202ENST00000398738 AATFQ9NY61 560 aaKnown RBP eCLIP11.02□□□□□ -0.64
PTCHD4-202ENST00000398738 MYO1AQ9UBC5 1043 aa11.02□□□□□ -0.64
PTCHD4-202ENST00000398738 ZSCAN5CA6NGD5 496 aaPredicted RBP11.02□□□□□ -0.65
PTCHD4-202ENST00000398738 PATL2C9JE40 543 aaKnown RBP11.02□□□□□ -0.65
PTCHD4-202ENST00000398738 LIFRP42702 1097 aa11.02□□□□□ -0.65
PTCHD4-202ENST00000398738 AARSP49588 968 aaKnown RBP eCLIP11.02□□□□□ -0.65
PTCHD4-202ENST00000398738 CKAP4Q07065 602 aaKnown RBP11.02□□□□□ -0.65
PTCHD4-202ENST00000398738 NR6A1Q15406 480 aa11.02□□□□□ -0.65
PTCHD4-202ENST00000398738 MB21D1Q8N884 522 aa11.02□□□□□ -0.65
PTCHD4-202ENST00000398738 SECISBP2LQ93073 1101 aaKnown RBP11.02□□□□□ -0.65
PTCHD4-202ENST00000398738 OTUD5Q96G74 571 aa11.02□□□□□ -0.65
PTCHD4-202ENST00000398738 NHEJ1Q9H9Q4 299 aaPredicted RBP11.02□□□□□ -0.65
PTCHD4-202ENST00000398738 CCDC196A0A1B0GTZ2 297 aa11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 BUB1O43683 1085 aa11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 RPN1P04843 607 aaKnown RBP11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 STAT6P42226 847 aa11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 NLRP5P59047 1200 aa11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 KCNV1Q6PIU1 500 aa11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 MS4A14Q96JA4 679 aa11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 CCDC42Q96M95 316 aa11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 CXorf56Q9H5V9 222 aa11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 YY1AP1Q9H869 796 aa11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 VIPAS39Q9H9C1 493 aa11.01□□□□□ -0.65
PTCHD4-202ENST00000398738 LRP2BPQ9P2M1 347 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms