RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 EXOSC10Q01780 885 aaKnown RBP21.25■□□□□ 0.99
USP48-201ENST00000308271 MB21D2Q8IYB1 491 aaPredicted RBP21.25■□□□□ 0.99
USP48-201ENST00000308271 PPP1R12CQ9BZL4 782 aa21.25■□□□□ 0.99
USP48-201ENST00000308271 ADAMTS2O95450 1211 aa21.24■□□□□ 0.99
USP48-201ENST00000308271 RPAINQ86UA6 219 aa21.24■□□□□ 0.99
USP48-201ENST00000308271 PRPF3O43395 683 aaKnown RBP21.24■□□□□ 0.99
USP48-201ENST00000308271 H2AFXP16104 143 aaPredicted RBP21.24■□□□□ 0.99
USP48-201ENST00000308271 CXCR5P32302 372 aa21.24■□□□□ 0.99
USP48-201ENST00000308271 RAB3IPQ96QF0 476 aaPredicted RBP21.24■□□□□ 0.99
USP48-201ENST00000308271 SAP30BPQ9UHR5 308 aaKnown RBP21.24■□□□□ 0.99
USP48-201ENST00000308271 STK38LQ9Y2H1 464 aa21.24■□□□□ 0.99
USP48-201ENST00000308271 PARP3Q9Y6F1 533 aa21.24■□□□□ 0.99
USP48-201ENST00000308271 MOCS3O95396 460 aa21.24■□□□□ 0.99
USP48-201ENST00000308271 BCRP11274 1271 aa21.24■□□□□ 0.99
USP48-201ENST00000308271 ZCCHC11Q5TAX3 1644 aaKnown RBP21.24■□□□□ 0.99
USP48-201ENST00000308271 FAM26FQ5R3K3 315 aa21.24■□□□□ 0.99
USP48-201ENST00000308271 TACO1Q9BSH4 297 aaKnown RBP21.24■□□□□ 0.99
USP48-201ENST00000308271 PCDHA13Q9Y5I0 950 aa21.24■□□□□ 0.99
USP48-201ENST00000308271 GAS8O95995 478 aa21.23■□□□□ 0.99
USP48-201ENST00000308271 EIF4A3P38919 411 aaKnown RBP21.23■□□□□ 0.99
USP48-201ENST00000308271 COG1Q8WTW3 980 aa21.23■□□□□ 0.99
USP48-201ENST00000308271 CHUKO15111 745 aa21.23■□□□□ 0.99
USP48-201ENST00000308271 VSNL1P62760 191 aa21.23■□□□□ 0.99
USP48-201ENST00000308271 WDR66Q8TBY9 1149 aa21.23■□□□□ 0.99
USP48-201ENST00000308271 MAIP1Q8WWC4 291 aa21.23■□□□□ 0.99
USP48-201ENST00000308271 MCUR1Q96AQ8 359 aa21.23■□□□□ 0.99
USP48-201ENST00000308271 TEX33O43247 280 aa21.23■□□□□ 0.99
USP48-201ENST00000308271 CIB2O75838 187 aa21.23■□□□□ 0.99
USP48-201ENST00000308271 PI16Q6UXB8 463 aa21.23■□□□□ 0.99
USP48-201ENST00000308271 SREK1Q8WXA9 508 aaKnown RBP21.23■□□□□ 0.99
USP48-201ENST00000308271 GPKOWQ92917 476 aaPredicted RBP eCLIP21.23■□□□□ 0.992e-6■■□□□ 11.8
USP48-201ENST00000308271 AP5Z1O43299 807 aa21.22■□□□□ 0.99
USP48-201ENST00000308271 KIF11P52732 1056 aa21.22■□□□□ 0.99
USP48-201ENST00000308271 ARL6IP4Q66PJ3 421 aaKnown RBP21.22■□□□□ 0.99
USP48-201ENST00000308271 STOX1Q6ZVD7 989 aa21.22■□□□□ 0.99
USP48-201ENST00000308271 ARHGAP24Q8N264 748 aa21.22■□□□□ 0.99
USP48-201ENST00000308271 ARHGEF2Q92974 986 aaKnown RBP21.22■□□□□ 0.99
USP48-201ENST00000308271 IMPG2Q9BZV3 1241 aa21.22■□□□□ 0.99
USP48-201ENST00000308271 GREM2Q9H772 168 aa21.22■□□□□ 0.99
USP48-201ENST00000308271 VIPAS39Q9H9C1 493 aa21.22■□□□□ 0.99
USP48-201ENST00000308271 INTS9Q9NV88 658 aaKnown RBP21.22■□□□□ 0.99
USP48-201ENST00000308271 TUBE1Q9UJT0 475 aa21.22■□□□□ 0.99
USP48-201ENST00000308271 CCDC160A6NGH7 325 aa21.22■□□□□ 0.99
USP48-201ENST00000308271 LGALS16A8MUM7 142 aa21.22■□□□□ 0.99
USP48-201ENST00000308271 PDCLQ13371 301 aa21.22■□□□□ 0.99
USP48-201ENST00000308271 HHATQ5VTY9 493 aa21.22■□□□□ 0.99
USP48-201ENST00000308271 ANKRD42Q8N9B4 389 aa21.22■□□□□ 0.99
USP48-201ENST00000308271 MGARPQ8TDB4 240 aa21.22■□□□□ 0.99
USP48-201ENST00000308271 CNOT10Q9H9A5 744 aaKnown RBP21.22■□□□□ 0.99
USP48-201ENST00000308271 H7C1W4 665 aa21.22■□□□□ 0.99
USP48-201ENST00000308271 HMGB2P26583 209 aaKnown RBP21.22■□□□□ 0.99
USP48-201ENST00000308271 TBC1D31Q96DN5 1066 aa21.22■□□□□ 0.99
USP48-201ENST00000308271 ARHGEF40Q8TER5 1519 aa21.22■□□□□ 0.99
USP48-201ENST00000308271 KIAA1210Q9ULL0 1709 aa21.22■□□□□ 0.99
USP48-201ENST00000308271 SLC7A5Q01650 507 aa21.22■□□□□ 0.99
USP48-201ENST00000308271 ENGASEQ8NFI3 743 aa21.22■□□□□ 0.99
USP48-201ENST00000308271 RIC8AQ9NPQ8 531 aa21.21■□□□□ 0.99
USP48-201ENST00000308271 UBAP1LF5GYI3 381 aa21.21■□□□□ 0.99
USP48-201ENST00000308271 PGRMC1O00264 195 aaKnown RBP21.21■□□□□ 0.99
USP48-201ENST00000308271 BCAMP50895 628 aa21.21■□□□□ 0.99
USP48-201ENST00000308271 ZNF131P52739 623 aa21.21■□□□□ 0.99
USP48-201ENST00000308271 PLS1Q14651 629 aa21.21■□□□□ 0.99
USP48-201ENST00000308271 FERMT1Q9BQL6 677 aa21.21■□□□□ 0.99
USP48-201ENST00000308271 BIN2Q9UBW5 565 aaPredicted RBP21.21■□□□□ 0.99
USP48-201ENST00000308271 PCDHA4Q9UN74 947 aa21.21■□□□□ 0.99
USP48-201ENST00000308271 TARSL2A2RTX5 802 aaKnown RBP21.21■□□□□ 0.99
USP48-201ENST00000308271 SUN1O94901 812 aa21.21■□□□□ 0.99
USP48-201ENST00000308271 LUC7L3O95232 432 aaKnown RBP21.21■□□□□ 0.99
USP48-201ENST00000308271 METTL16Q86W50 562 aaKnown RBP21.21■□□□□ 0.99
USP48-201ENST00000308271 DNAI2Q9GZS0 605 aa21.21■□□□□ 0.99
USP48-201ENST00000308271 METTL14Q9HCE5 456 aaKnown RBP21.21■□□□□ 0.99
USP48-201ENST00000308271 PXDNLA1KZ92 1463 aa21.21■□□□□ 0.99
USP48-201ENST00000308271 SYNCQ9H7C4 482 aa21.21■□□□□ 0.99
USP48-201ENST00000308271 HECW2Q9P2P5 1572 aa21.2■□□□□ 0.99
USP48-201ENST00000308271 E2F5Q15329 346 aa21.2■□□□□ 0.98
USP48-201ENST00000308271 KCNB2Q92953 911 aa21.2■□□□□ 0.98
USP48-201ENST00000308271 MRPL44Q9H9J2 332 aaKnown RBP21.2■□□□□ 0.98
USP48-201ENST00000308271 NCAPD2Q15021 1401 aa21.2■□□□□ 0.98
USP48-201ENST00000308271 SRGAP2O75044 1071 aa21.2■□□□□ 0.98
USP48-201ENST00000308271 GCNT3O95395 438 aa21.2■□□□□ 0.98
USP48-201ENST00000308271 PBKQ96KB5 322 aa21.2■□□□□ 0.98
USP48-201ENST00000308271 RUNDC3BQ96NL0 473 aa21.2■□□□□ 0.98
USP48-201ENST00000308271 EIF4ENIF1Q9NRA8 985 aaKnown RBP21.2■□□□□ 0.98
USP48-201ENST00000308271 PANK4Q9NVE7 773 aa21.2■□□□□ 0.98
USP48-201ENST00000308271 ABCB4P21439 1286 aa21.2■□□□□ 0.98
USP48-201ENST00000308271 RFC4P35249 363 aa21.2■□□□□ 0.98
USP48-201ENST00000308271 FKBP3Q00688 224 aaKnown RBP21.2■□□□□ 0.98
USP48-201ENST00000308271 ADAM9Q13443 819 aa21.2■□□□□ 0.98
USP48-201ENST00000308271 MTF1Q14872 753 aa21.2■□□□□ 0.98
USP48-201ENST00000308271 GPBP1Q86WP2 473 aa21.2■□□□□ 0.98
USP48-201ENST00000308271 KIF28PB7ZC32 967 aa21.19■□□□□ 0.98
USP48-201ENST00000308271 HOXA7P31268 230 aaPredicted RBP21.19■□□□□ 0.98
USP48-201ENST00000308271 PLA2G4AP47712 749 aa21.19■□□□□ 0.98
USP48-201ENST00000308271 CTNND1O60716 968 aaKnown RBP21.19■□□□□ 0.98
USP48-201ENST00000308271 LRCH2Q5VUJ6 765 aa21.19■□□□□ 0.98
USP48-201ENST00000308271 IRX2Q9BZI1 471 aaPredicted RBP21.19■□□□□ 0.98
USP48-201ENST00000308271 PCDHB13Q9Y5F0 798 aa21.19■□□□□ 0.98
USP48-201ENST00000308271 F8W031 263 aaPredicted RBP21.19■□□□□ 0.98
USP48-201ENST00000308271 TRIM66O15016 1216 aa21.19■□□□□ 0.98
USP48-201ENST00000308271 PRR29P0C7W0 189 aa21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms