RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 TXLNAP40222 546 aa16.76■□□□□ 0.27
CLN3-253ENST00000636977 SRGAP1Q7Z6B7 1085 aa16.76■□□□□ 0.27
CLN3-253ENST00000636977 CDC23Q9UJX2 597 aa16.76■□□□□ 0.27
CLN3-253ENST00000636977 GYS2P54840 703 aa16.75■□□□□ 0.27
CLN3-253ENST00000636977 TPTE2Q6XPS3 522 aa16.75■□□□□ 0.27
CLN3-253ENST00000636977 FUT8Q9BYC5 575 aa16.75■□□□□ 0.27
CLN3-253ENST00000636977 NYXQ9GZU5 481 aa16.75■□□□□ 0.27
CLN3-253ENST00000636977 PDS5AQ29RF7 1337 aaKnown RBP16.75■□□□□ 0.27
CLN3-253ENST00000636977 CNTNAP4Q9C0A0 1308 aa16.75■□□□□ 0.27
CLN3-253ENST00000636977 KLK7P49862 253 aa16.75■□□□□ 0.27
CLN3-253ENST00000636977 ARHGEF1Q92888 912 aaKnown RBP16.75■□□□□ 0.27
CLN3-253ENST00000636977 SUGCTQ9HAC7 445 aa16.75■□□□□ 0.27
CLN3-253ENST00000636977 TMTC1Q8IUR5 882 aa16.74■□□□□ 0.27
CLN3-253ENST00000636977 HPS3Q969F9 1004 aa16.74■□□□□ 0.27
CLN3-253ENST00000636977 RPS6KA4O75676 772 aa16.74■□□□□ 0.27
CLN3-253ENST00000636977 RASA1P20936 1047 aa16.74■□□□□ 0.27
CLN3-253ENST00000636977 UBA7P41226 1012 aa16.74■□□□□ 0.27
CLN3-253ENST00000636977 UBXN6Q9BZV1 441 aa16.74■□□□□ 0.27
CLN3-253ENST00000636977 VAT1LQ9HCJ6 419 aa16.74■□□□□ 0.27
CLN3-253ENST00000636977 ARFGAP3Q9NP61 516 aa16.74■□□□□ 0.27
CLN3-253ENST00000636977 SH3GLB2Q9NR46 395 aa16.74■□□□□ 0.27
CLN3-253ENST00000636977 RMND1Q9NWS8 449 aa16.74■□□□□ 0.27
CLN3-253ENST00000636977 CCDC88AQ3V6T2 1871 aa16.74■□□□□ 0.27
CLN3-253ENST00000636977 RHOXF2BP0C7M4 288 aa16.74■□□□□ 0.27
CLN3-253ENST00000636977 USP17L2Q6R6M4 530 aa16.74■□□□□ 0.27
CLN3-253ENST00000636977 CYP26C1Q6V0L0 522 aa16.74■□□□□ 0.27
CLN3-253ENST00000636977 ZNF444Q8N0Y2 327 aaPredicted RBP16.74■□□□□ 0.27
CLN3-253ENST00000636977 MB21D1Q8N884 522 aa16.74■□□□□ 0.27
CLN3-253ENST00000636977 CCDC51Q96ER9 411 aa16.74■□□□□ 0.27
CLN3-253ENST00000636977 RHOXF2Q9BQY4 288 aa16.74■□□□□ 0.27
CLN3-253ENST00000636977 BARHL2Q9NY43 387 aa16.74■□□□□ 0.27
CLN3-253ENST00000636977 CTAGE9A4FU28 777 aa16.73■□□□□ 0.27
CLN3-253ENST00000636977 OAS2P29728 719 aaKnown RBP16.73■□□□□ 0.27
CLN3-253ENST00000636977 ST5P78524 1137 aa16.73■□□□□ 0.27
CLN3-253ENST00000636977 TXNRD1Q16881 649 aa16.73■□□□□ 0.27
CLN3-253ENST00000636977 LONRF2Q1L5Z9 754 aa16.73■□□□□ 0.27
CLN3-253ENST00000636977 GUCA1BQ9UMX6 200 aa16.73■□□□□ 0.27
CLN3-253ENST00000636977 B4DLN1 442 aa16.73■□□□□ 0.27
CLN3-253ENST00000636977 KLRF2D3W0D1 207 aa16.73■□□□□ 0.27
CLN3-253ENST00000636977 PLCG1P19174 1290 aa16.73■□□□□ 0.27
CLN3-253ENST00000636977 SPAG1Q07617 926 aa16.73■□□□□ 0.27
CLN3-253ENST00000636977 LETM2Q2VYF4 491 aa16.73■□□□□ 0.27
CLN3-253ENST00000636977 NCAPH2Q6IBW4 605 aa16.73■□□□□ 0.27
CLN3-253ENST00000636977 TRIM47Q96LD4 638 aa16.73■□□□□ 0.27
CLN3-253ENST00000636977 TTF2Q9UNY4 1162 aaKnown RBP16.73■□□□□ 0.27
CLN3-253ENST00000636977 PALM3A6NDB9 673 aaPredicted RBP16.72■□□□□ 0.27
CLN3-253ENST00000636977 H7C1D1 291 aa16.72■□□□□ 0.27
CLN3-253ENST00000636977 ENC1O14682 589 aa16.72■□□□□ 0.27
CLN3-253ENST00000636977 SMC1AQ14683 1233 aaKnown RBP16.72■□□□□ 0.27
CLN3-253ENST00000636977 WDR59Q6PJI9 974 aa16.72■□□□□ 0.27
CLN3-253ENST00000636977 ZNF507Q8TCN5 953 aa16.72■□□□□ 0.27
CLN3-253ENST00000636977 ANKS1AQ92625 1134 aa16.72■□□□□ 0.27
CLN3-253ENST00000636977 KBTBD4Q9NVX7 518 aa16.72■□□□□ 0.27
CLN3-253ENST00000636977 HDAC6Q9UBN7 1215 aa16.72■□□□□ 0.27
CLN3-253ENST00000636977 TNRC6CQ9HCJ0 1690 aaKnown RBP16.72■□□□□ 0.27
CLN3-253ENST00000636977 FLT1P17948 1338 aa16.72■□□□□ 0.27
CLN3-253ENST00000636977 FCER1AP12319 257 aa16.72■□□□□ 0.27
CLN3-253ENST00000636977 SPTY2D1Q68D10 685 aaPredicted RBP16.72■□□□□ 0.27
CLN3-253ENST00000636977 ANKRD20A12PQ8NF67 263 aa16.72■□□□□ 0.27
CLN3-253ENST00000636977 DUSP9Q99956 384 aaKnown RBP16.72■□□□□ 0.27
CLN3-253ENST00000636977 AGPAT5Q9NUQ2 364 aa16.72■□□□□ 0.27
CLN3-253ENST00000636977 EPN1Q9Y6I3 576 aaPredicted RBP16.72■□□□□ 0.27
CLN3-253ENST00000636977 RASSF10A6NK89 507 aa16.71■□□□□ 0.27
CLN3-253ENST00000636977 H3BQF6 201 aa16.71■□□□□ 0.27
CLN3-253ENST00000636977 CCNT1O60563 726 aaKnown RBP16.71■□□□□ 0.27
CLN3-253ENST00000636977 NDUFA10O95299 355 aa16.71■□□□□ 0.27
CLN3-253ENST00000636977 TTI2Q6NXR4 508 aa16.71■□□□□ 0.27
CLN3-253ENST00000636977 NOA1Q8NC60 698 aaKnown RBP16.71■□□□□ 0.27
CLN3-253ENST00000636977 PYM1Q9BRP8 204 aaKnown RBP16.71■□□□□ 0.27
CLN3-253ENST00000636977 CALCOCO1Q9P1Z2 691 aa16.71■□□□□ 0.27
CLN3-253ENST00000636977 LGALS16A8MUM7 142 aa16.71■□□□□ 0.27
CLN3-253ENST00000636977 PIP4K2BP78356 416 aa16.71■□□□□ 0.27
CLN3-253ENST00000636977 STK4Q13043 487 aa16.71■□□□□ 0.27
CLN3-253ENST00000636977 GPIHBP1Q8IV16 184 aa16.71■□□□□ 0.27
CLN3-253ENST00000636977 NAPGQ99747 312 aaPredicted RBP16.71■□□□□ 0.27
CLN3-253ENST00000636977 UBA5Q9GZZ9 404 aa16.71■□□□□ 0.27
CLN3-253ENST00000636977 TECP42680 631 aa16.71■□□□□ 0.26
CLN3-253ENST00000636977 NAPAP54920 295 aa16.71■□□□□ 0.26
CLN3-253ENST00000636977 HERVK_113P62684 666 aa16.71■□□□□ 0.26
CLN3-253ENST00000636977 GIMAP8Q8ND71 665 aaPredicted RBP16.71■□□□□ 0.26
CLN3-253ENST00000636977 TMEM260Q9NX78 707 aa16.71■□□□□ 0.26
CLN3-253ENST00000636977 RHOBTB3O94955 611 aa16.7■□□□□ 0.26
CLN3-253ENST00000636977 CYP2C19P33261 490 aa16.7■□□□□ 0.26
CLN3-253ENST00000636977 CCDC178Q5BJE1 867 aa16.7■□□□□ 0.26
CLN3-253ENST00000636977 ANKRD40Q6AI12 368 aa16.7■□□□□ 0.26
CLN3-253ENST00000636977 CABP7Q86V35 215 aa16.7■□□□□ 0.26
CLN3-253ENST00000636977 WDR66Q8TBY9 1149 aa16.7■□□□□ 0.26
CLN3-253ENST00000636977 RTFDC1Q9BY42 306 aaPredicted RBP16.7■□□□□ 0.26
CLN3-253ENST00000636977 CCNL1Q9UK58 526 aaPredicted RBP16.7■□□□□ 0.26
CLN3-253ENST00000636977 BTDP43251 543 aa16.7■□□□□ 0.26
CLN3-253ENST00000636977 CDK8P49336 464 aa16.7■□□□□ 0.26
CLN3-253ENST00000636977 NEK11Q8NG66 645 aa16.7■□□□□ 0.26
CLN3-253ENST00000636977 CCSER1Q9C0I3 900 aa16.7■□□□□ 0.26
CLN3-253ENST00000636977 RNF216Q9NWF9 866 aaPredicted RBP16.7■□□□□ 0.26
CLN3-253ENST00000636977 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.7■□□□□ 0.26
CLN3-253ENST00000636977 BIN2Q9UBW5 565 aaPredicted RBP16.7■□□□□ 0.26
CLN3-253ENST00000636977 RTCBQ9Y3I0 505 aaKnown RBP16.7■□□□□ 0.26
CLN3-253ENST00000636977 SBF2Q86WG5 1849 aa16.7■□□□□ 0.26
CLN3-253ENST00000636977 MAST2Q6P0Q8 1798 aa16.69■□□□□ 0.26
CLN3-253ENST00000636977 RCCD1A6NED2 376 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms