RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-222ENST00000600320 MORF4L1Q9UBU8 362 aa23.24■■□□□ 1.31
SHKBP1-222ENST00000600320 ZNF214Q9UL59 606 aaPredicted RBP23.24■■□□□ 1.31
SHKBP1-222ENST00000600320 RABGAP1Q9Y3P9 1069 aa23.24■■□□□ 1.31
SHKBP1-222ENST00000600320 ZNF536O15090 1300 aa23.24■■□□□ 1.31
SHKBP1-222ENST00000600320 ZBED4O75132 1171 aa23.23■■□□□ 1.31
SHKBP1-222ENST00000600320 CTDNEP1O95476 244 aa23.23■■□□□ 1.31
SHKBP1-222ENST00000600320 QRICH1Q2TAL8 776 aa23.23■■□□□ 1.31
SHKBP1-222ENST00000600320 CCDC83Q8IWF9 413 aa23.23■■□□□ 1.31
SHKBP1-222ENST00000600320 CPXCR1Q8N123 301 aa23.23■■□□□ 1.31
SHKBP1-222ENST00000600320 MB21D1Q8N884 522 aa23.23■■□□□ 1.31
SHKBP1-222ENST00000600320 SAGE1Q9NXZ1 904 aa23.23■■□□□ 1.31
SHKBP1-222ENST00000600320 TSKSQ9UJT2 592 aa23.23■■□□□ 1.31
SHKBP1-222ENST00000600320 hCG_1642624A0A1W2PR95 340 aa23.22■■□□□ 1.31
SHKBP1-222ENST00000600320 FDX1P10109 184 aa23.22■■□□□ 1.31
SHKBP1-222ENST00000600320 ERVK-9P63128 1117 aa23.22■■□□□ 1.31
SHKBP1-222ENST00000600320 ERVK-24P63145 666 aa23.22■■□□□ 1.31
SHKBP1-222ENST00000600320 HOMER1Q86YM7 354 aa23.22■■□□□ 1.31
SHKBP1-222ENST00000600320 PHKBQ93100 1093 aa23.22■■□□□ 1.31
SHKBP1-222ENST00000600320 SNX21Q969T3 373 aa23.22■■□□□ 1.31
SHKBP1-222ENST00000600320 SH2B1Q9NRF2 756 aaPredicted RBP23.22■■□□□ 1.31
SHKBP1-222ENST00000600320 PPP1R11O60927 126 aaPredicted RBP23.21■■□□□ 1.31
SHKBP1-222ENST00000600320 IFNAR1P17181 557 aa23.21■■□□□ 1.31
SHKBP1-222ENST00000600320 FAM110CQ1W6H9 321 aa23.21■■□□□ 1.31
SHKBP1-222ENST00000600320 AGBL1Q96MI9 1066 aa23.21■■□□□ 1.31
SHKBP1-222ENST00000600320 CTDP1Q9Y5B0 961 aaPredicted RBP23.21■■□□□ 1.31
SHKBP1-222ENST00000600320 CPLX1O14810 134 aa23.2■■□□□ 1.3
SHKBP1-222ENST00000600320 PLS1Q14651 629 aa23.2■■□□□ 1.3
SHKBP1-222ENST00000600320 GPRC5AQ8NFJ5 357 aa23.2■■□□□ 1.3
SHKBP1-222ENST00000600320 BEGAINQ9BUH8 593 aa23.2■■□□□ 1.3
SHKBP1-222ENST00000600320 SPATC1LQ9H0A9 340 aa23.2■■□□□ 1.3
SHKBP1-222ENST00000600320 RIPK3Q9Y572 518 aa23.2■■□□□ 1.3
SHKBP1-222ENST00000600320 V9GY48 417 aaPredicted RBP23.2■■□□□ 1.3
SHKBP1-222ENST00000600320 ATP2A1O14983 1001 aa23.19■■□□□ 1.3
SHKBP1-222ENST00000600320 ZBTB5O15062 677 aa23.19■■□□□ 1.3
SHKBP1-222ENST00000600320 ICAM1P05362 532 aa23.19■■□□□ 1.3
SHKBP1-222ENST00000600320 OAZ1P54368 228 aa23.19■■□□□ 1.3
SHKBP1-222ENST00000600320 NSUN7Q8NE18 718 aaKnown RBP23.19■■□□□ 1.3
SHKBP1-222ENST00000600320 RRP36Q96EU6 259 aaKnown RBP23.19■■□□□ 1.3
SHKBP1-222ENST00000600320 SLC26A6Q9BXS9 759 aa23.19■■□□□ 1.3
SHKBP1-222ENST00000600320 MOV10L1Q9BXT6 1211 aaKnown RBP23.19■■□□□ 1.3
SHKBP1-222ENST00000600320 SMCHD1A6NHR9 2005 aa23.18■■□□□ 1.3
SHKBP1-222ENST00000600320 GPR25O00155 361 aa23.18■■□□□ 1.3
SHKBP1-222ENST00000600320 JAK2O60674 1132 aa23.18■■□□□ 1.3
SHKBP1-222ENST00000600320 STAT3P40763 770 aa23.18■■□□□ 1.3
SHKBP1-222ENST00000600320 SLC4A3P48751 1232 aa23.18■■□□□ 1.3
SHKBP1-222ENST00000600320 SNRNP48Q6IEG0 339 aaKnown RBP23.18■■□□□ 1.3
SHKBP1-222ENST00000600320 RIOX2Q8IUF8 465 aa23.18■■□□□ 1.3
SHKBP1-222ENST00000600320 TEX13BQ9BXU2 312 aa23.18■■□□□ 1.3
SHKBP1-222ENST00000600320 PORCNQ9H237 461 aa23.18■■□□□ 1.3
SHKBP1-222ENST00000600320 CCPG1Q9ULG6 757 aa23.18■■□□□ 1.3
SHKBP1-222ENST00000600320 PNMA6FA0A0J9YX94 578 aa23.17■■□□□ 1.3
SHKBP1-222ENST00000600320 K7ELQ4 463 aaPredicted RBP23.17■■□□□ 1.3
SHKBP1-222ENST00000600320 PRPF3O43395 683 aaKnown RBP23.17■■□□□ 1.3
SHKBP1-222ENST00000600320 ECM2O94769 699 aaPredicted RBP23.17■■□□□ 1.3
SHKBP1-222ENST00000600320 FMNL1O95466 1100 aaPredicted RBP23.17■■□□□ 1.3
SHKBP1-222ENST00000600320 PKN1Q16512 942 aa23.17■■□□□ 1.3
SHKBP1-222ENST00000600320 CPLX2Q6PUV4 134 aaKnown RBP23.17■■□□□ 1.3
SHKBP1-222ENST00000600320 RNF26Q9BY78 433 aaPredicted RBP23.17■■□□□ 1.3
SHKBP1-222ENST00000600320 EFCC1Q9HA90 598 aa23.17■■□□□ 1.3
SHKBP1-222ENST00000600320 HSPA1AP0DMV8 641 aaKnown RBP23.16■■□□□ 1.3
SHKBP1-222ENST00000600320 HSPA1BP0DMV9 641 aaKnown RBP23.16■■□□□ 1.3
SHKBP1-222ENST00000600320 CTGFP29279 349 aa23.16■■□□□ 1.3
SHKBP1-222ENST00000600320 CAP1Q01518 475 aa23.16■■□□□ 1.3
SHKBP1-222ENST00000600320 SSRP1Q08945 709 aaKnown RBP23.16■■□□□ 1.3
SHKBP1-222ENST00000600320 USH1GQ495M9 461 aa23.16■■□□□ 1.3
SHKBP1-222ENST00000600320 FBXO11Q86XK2 927 aa23.16■■□□□ 1.3
SHKBP1-222ENST00000600320 MYH6P13533 1939 aa23.16■■□□□ 1.3
SHKBP1-222ENST00000600320 PTPDC1A2A3K4 754 aa23.15■■□□□ 1.3
SHKBP1-222ENST00000600320 FOXN1O15353 648 aa23.15■■□□□ 1.3
SHKBP1-222ENST00000600320 ALAS1P13196 640 aa23.15■■□□□ 1.3
SHKBP1-222ENST00000600320 ERCC3P19447 782 aa23.15■■□□□ 1.3
SHKBP1-222ENST00000600320 CUL4AQ13619 759 aa23.15■■□□□ 1.3
SHKBP1-222ENST00000600320 HSCBQ8IWL3 235 aa23.15■■□□□ 1.3
SHKBP1-222ENST00000600320 GPKOWQ92917 476 aaPredicted RBP eCLIP23.15■■□□□ 1.3
SHKBP1-222ENST00000600320 COA7Q96BR5 231 aa23.15■■□□□ 1.3
SHKBP1-222ENST00000600320 AMNQ9BXJ7 453 aa23.15■■□□□ 1.3
SHKBP1-222ENST00000600320 SEC63Q9UGP8 760 aaKnown RBP23.15■■□□□ 1.3
SHKBP1-222ENST00000600320 ZSWIM8A7E2V4 1837 aa23.15■■□□□ 1.3
SHKBP1-222ENST00000600320 CDKL5O76039 1030 aa23.14■■□□□ 1.29
SHKBP1-222ENST00000600320 FDPSP14324 419 aaKnown RBP23.14■■□□□ 1.29
SHKBP1-222ENST00000600320 SP3Q02447 781 aa23.14■■□□□ 1.29
SHKBP1-222ENST00000600320 PFKFB3Q16875 520 aaPredicted RBP23.14■■□□□ 1.29
SHKBP1-222ENST00000600320 MUM1L1Q5H9M0 696 aa23.14■■□□□ 1.29
SHKBP1-222ENST00000600320 COL13A1Q5TAT6 717 aaPredicted RBP23.14■■□□□ 1.29
SHKBP1-222ENST00000600320 WWC2Q6AWC2 1192 aa23.14■■□□□ 1.29
SHKBP1-222ENST00000600320 NCAPG2Q86XI2 1143 aa23.14■■□□□ 1.29
SHKBP1-222ENST00000600320 SHCBP1Q8NEM2 672 aa23.14■■□□□ 1.29
SHKBP1-222ENST00000600320 SMARCC2Q8TAQ2 1214 aa23.14■■□□□ 1.29
SHKBP1-222ENST00000600320 DDX11Q96FC9 970 aa23.14■■□□□ 1.29
SHKBP1-222ENST00000600320 ARHGAP39Q9C0H5 1083 aa23.14■■□□□ 1.29
SHKBP1-222ENST00000600320 TSHZ2Q9NRE2 1034 aa23.14■■□□□ 1.29
SHKBP1-222ENST00000600320 HOMER2Q9NSB8 354 aa23.14■■□□□ 1.29
SHKBP1-222ENST00000600320 RNF146Q9NTX7 359 aa23.14■■□□□ 1.29
SHKBP1-222ENST00000600320 STK36Q9NRP7 1315 aa23.13■■□□□ 1.29
SHKBP1-222ENST00000600320 SLC25A27O95847 323 aa23.13■■□□□ 1.29
SHKBP1-222ENST00000600320 HSPA8P11142 646 aaKnown RBP23.13■■□□□ 1.29
SHKBP1-222ENST00000600320 CCNA1P78396 465 aa23.13■■□□□ 1.29
SHKBP1-222ENST00000600320 AKAP17AQ02040 695 aaKnown RBP23.13■■□□□ 1.29
SHKBP1-222ENST00000600320 NOM1Q5C9Z4 860 aaKnown RBP23.13■■□□□ 1.29
SHKBP1-222ENST00000600320 TYW1BQ6NUM6 668 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms