RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 NR5A1Q13285 461 aa16.95■□□□□ 0.3
SHKBP1-211ENST00000595945 MYSM1Q5VVJ2 828 aa16.95■□□□□ 0.3
SHKBP1-211ENST00000595945 CST9Q5W186 159 aa16.95■□□□□ 0.3
SHKBP1-211ENST00000595945 ATL3Q6DD88 541 aa16.95■□□□□ 0.3
SHKBP1-211ENST00000595945 CATSPERGQ6ZRH7 1159 aa16.95■□□□□ 0.3
SHKBP1-211ENST00000595945 NOSTRINQ8IVI9 506 aa16.95■□□□□ 0.3
SHKBP1-211ENST00000595945 BLIDQ8IZY5 108 aa16.95■□□□□ 0.3
SHKBP1-211ENST00000595945 C2orf69Q8N8R5 385 aa16.95■□□□□ 0.3
SHKBP1-211ENST00000595945 COA7Q96BR5 231 aa16.95■□□□□ 0.3
SHKBP1-211ENST00000595945 GPBP1L1Q9HC44 474 aaPredicted RBP16.95■□□□□ 0.3
SHKBP1-211ENST00000595945 PPP1R9AQ9ULJ8 1098 aa16.95■□□□□ 0.3
SHKBP1-211ENST00000595945 PCDHA4Q9UN74 947 aa16.95■□□□□ 0.3
SHKBP1-211ENST00000595945 MYH7BA7E2Y1 1941 aa16.95■□□□□ 0.3
SHKBP1-211ENST00000595945 SNAP25P60880 206 aa16.94■□□□□ 0.3
SHKBP1-211ENST00000595945 MOGSQ13724 837 aa16.94■□□□□ 0.3
SHKBP1-211ENST00000595945 FOXD4L6Q3SYB3 417 aaPredicted RBP16.94■□□□□ 0.3
SHKBP1-211ENST00000595945 FOXD4L3Q6VB84 417 aaPredicted RBP16.94■□□□□ 0.3
SHKBP1-211ENST00000595945 FBXO11Q86XK2 927 aa16.94■□□□□ 0.3
SHKBP1-211ENST00000595945 PRPF38AQ8NAV1 312 aaKnown RBP16.94■□□□□ 0.3
SHKBP1-211ENST00000595945 TMEM87AQ8NBN3 555 aa16.94■□□□□ 0.3
SHKBP1-211ENST00000595945 PROCA1Q8NCQ7 364 aaPredicted RBP16.94■□□□□ 0.3
SHKBP1-211ENST00000595945 KIFC2Q96AC6 838 aa16.94■□□□□ 0.3
SHKBP1-211ENST00000595945 OPTNQ96CV9 577 aa16.94■□□□□ 0.3
SHKBP1-211ENST00000595945 SLC10A4Q96EP9 437 aa16.94■□□□□ 0.3
SHKBP1-211ENST00000595945 AMNQ9BXJ7 453 aa16.94■□□□□ 0.3
SHKBP1-211ENST00000595945 BRMS1Q9HCU9 246 aa16.94■□□□□ 0.3
SHKBP1-211ENST00000595945 SMCO2A6NFE2 343 aa16.93■□□□□ 0.3
SHKBP1-211ENST00000595945 USP17L15C9J2P7 530 aa16.93■□□□□ 0.3
SHKBP1-211ENST00000595945 USP17L13C9JLJ4 530 aa16.93■□□□□ 0.3
SHKBP1-211ENST00000595945 USP17L11C9JVI0 530 aa16.93■□□□□ 0.3
SHKBP1-211ENST00000595945 USP17L18D6R9N7 530 aa16.93■□□□□ 0.3
SHKBP1-211ENST00000595945 USP17L22D6RA61 530 aa16.93■□□□□ 0.3
SHKBP1-211ENST00000595945 USP17L17D6RBQ6 530 aa16.93■□□□□ 0.3
SHKBP1-211ENST00000595945 USP17L19D6RCP7 530 aa16.93■□□□□ 0.3
SHKBP1-211ENST00000595945 USP17L20D6RJB6 530 aa16.93■□□□□ 0.3
SHKBP1-211ENST00000595945 FDX1P10109 184 aa16.93■□□□□ 0.3
SHKBP1-211ENST00000595945 USP17L24Q0WX57 530 aa16.93■□□□□ 0.3
SHKBP1-211ENST00000595945 TANGO6Q9C0B7 1094 aa16.93■□□□□ 0.3
SHKBP1-211ENST00000595945 C6orf50Q9HD87 102 aa16.93■□□□□ 0.3
SHKBP1-211ENST00000595945 ADAMTS5Q9UNA0 930 aa16.93■□□□□ 0.3
SHKBP1-211ENST00000595945 CNPY2Q9Y2B0 182 aa16.93■□□□□ 0.3
SHKBP1-211ENST00000595945 PCDHA1Q9Y5I3 950 aa16.93■□□□□ 0.3
SHKBP1-211ENST00000595945 ZNF536O15090 1300 aa16.93■□□□□ 0.3
SHKBP1-211ENST00000595945 MYPNQ86TC9 1320 aa16.93■□□□□ 0.3
SHKBP1-211ENST00000595945 FLOT1O75955 427 aa16.92■□□□□ 0.3
SHKBP1-211ENST00000595945 GNA11P29992 359 aa16.92■□□□□ 0.3
SHKBP1-211ENST00000595945 DSG3P32926 999 aa16.92■□□□□ 0.3
SHKBP1-211ENST00000595945 KRT85P78386 507 aa16.92■□□□□ 0.3
SHKBP1-211ENST00000595945 GNL2Q13823 731 aaKnown RBP16.92■□□□□ 0.3
SHKBP1-211ENST00000595945 EARS2Q5JPH6 523 aaKnown RBP16.92■□□□□ 0.3
SHKBP1-211ENST00000595945 REPS2Q8NFH8 660 aa16.92■□□□□ 0.3
SHKBP1-211ENST00000595945 WNK4Q96J92 1243 aa16.92■□□□□ 0.3
SHKBP1-211ENST00000595945 ZNF396Q96N95 335 aaPredicted RBP16.92■□□□□ 0.3
SHKBP1-211ENST00000595945 USP28Q96RU2 1077 aa16.92■□□□□ 0.3
SHKBP1-211ENST00000595945 SLC38A10Q9HBR0 1119 aa16.92■□□□□ 0.3
SHKBP1-211ENST00000595945 RIC8AQ9NPQ8 531 aa16.92■□□□□ 0.3
SHKBP1-211ENST00000595945 PCDHA6Q9UN73 950 aa16.92■□□□□ 0.3
SHKBP1-211ENST00000595945 PCDHA8Q9Y5H6 950 aa16.92■□□□□ 0.3
SHKBP1-211ENST00000595945 FAM205CA6NFA0 338 aa16.91■□□□□ 0.3
SHKBP1-211ENST00000595945 HOXA7P31268 230 aaPredicted RBP16.91■□□□□ 0.3
SHKBP1-211ENST00000595945 TOB1P50616 345 aaPredicted RBP16.91■□□□□ 0.3
SHKBP1-211ENST00000595945 ADCY7P51828 1080 aa16.91■□□□□ 0.3
SHKBP1-211ENST00000595945 TRAF1Q13077 416 aa16.91■□□□□ 0.3
SHKBP1-211ENST00000595945 NOM1Q5C9Z4 860 aaKnown RBP16.91■□□□□ 0.3
SHKBP1-211ENST00000595945 TREML2Q5T2D2 321 aa16.91■□□□□ 0.3
SHKBP1-211ENST00000595945 ATG4CQ96DT6 458 aa16.91■□□□□ 0.3
SHKBP1-211ENST00000595945 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.91■□□□□ 0.3
SHKBP1-211ENST00000595945 DDX11L8A8MPP1 907 aa16.9■□□□□ 0.3
SHKBP1-211ENST00000595945 VWA5AO00534 786 aa16.9■□□□□ 0.3
SHKBP1-211ENST00000595945 OPLAHO14841 1288 aa16.9■□□□□ 0.3
SHKBP1-211ENST00000595945 ICAM1P05362 532 aa16.9■□□□□ 0.3
SHKBP1-211ENST00000595945 CLK2P49760 499 aaKnown RBP16.9■□□□□ 0.3
SHKBP1-211ENST00000595945 COG2Q14746 738 aa16.9■□□□□ 0.3
SHKBP1-211ENST00000595945 GPAT2Q6NUI2 795 aa16.9■□□□□ 0.3
SHKBP1-211ENST00000595945 CCDC174Q6PII3 467 aa16.9■□□□□ 0.3
SHKBP1-211ENST00000595945 TEX2Q8IWB9 1127 aa16.9■□□□□ 0.3
SHKBP1-211ENST00000595945 BICD2Q8TD16 824 aa16.9■□□□□ 0.3
SHKBP1-211ENST00000595945 GLT8D2Q9H1C3 349 aa16.9■□□□□ 0.3
SHKBP1-211ENST00000595945 LMBRD1Q9NUN5 540 aa16.9■□□□□ 0.3
SHKBP1-211ENST00000595945 RTEL1Q9NZ71 1219 aa16.9■□□□□ 0.3
SHKBP1-211ENST00000595945 TFIP11Q9UBB9 837 aaKnown RBP16.9■□□□□ 0.3
SHKBP1-211ENST00000595945 RCOR1Q9UKL0 485 aa16.9■□□□□ 0.3
SHKBP1-211ENST00000595945 CFAP45Q9UL16 551 aa16.9■□□□□ 0.3
SHKBP1-211ENST00000595945 ABCB11O95342 1321 aa16.9■□□□□ 0.3
SHKBP1-211ENST00000595945 SPDYE16A6NNV3 312 aaPredicted RBP16.89■□□□□ 0.29
SHKBP1-211ENST00000595945 GOLGA6L22H0YM25 854 aa16.89■□□□□ 0.29
SHKBP1-211ENST00000595945 TAL1P17542 331 aaPredicted RBP16.89■□□□□ 0.29
SHKBP1-211ENST00000595945 NASPP49321 788 aaPredicted RBP16.89■□□□□ 0.29
SHKBP1-211ENST00000595945 SNAPC2Q13487 334 aa16.89■□□□□ 0.29
SHKBP1-211ENST00000595945 RILPL1Q5EBL4 403 aa16.89■□□□□ 0.29
SHKBP1-211ENST00000595945 SPRYD7Q5W111 196 aa16.89■□□□□ 0.29
SHKBP1-211ENST00000595945 GADL1Q6ZQY3 521 aa16.89■□□□□ 0.29
SHKBP1-211ENST00000595945 FASTKD5Q7L8L6 764 aaKnown RBP16.89■□□□□ 0.29
SHKBP1-211ENST00000595945 KRT25Q7Z3Z0 450 aa16.89■□□□□ 0.29
SHKBP1-211ENST00000595945 SMC1BQ8NDV3 1235 aa16.89■□□□□ 0.29
SHKBP1-211ENST00000595945 RASGRP4Q8TDF6 673 aa16.89■□□□□ 0.29
SHKBP1-211ENST00000595945 LEO1Q8WVC0 666 aaPredicted RBP16.89■□□□□ 0.29
SHKBP1-211ENST00000595945 CUL5Q93034 780 aa16.89■□□□□ 0.29
SHKBP1-211ENST00000595945 MS4A4AQ96JQ5 239 aa16.89■□□□□ 0.29
SHKBP1-211ENST00000595945 FTOQ9C0B1 505 aaKnown RBP eCLIP16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms