RNA–Protein interactions for RNA: ENST00000593008.1

DDX39A-220, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 538 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-220ENST00000593008 GTF3C2Q8WUA4 911 aaPredicted RBP11.24□□□□□ -0.61
DDX39A-220ENST00000593008 LPAR1Q92633 364 aa11.24□□□□□ -0.61
DDX39A-220ENST00000593008 PHKBQ93100 1093 aa11.24□□□□□ -0.61
DDX39A-220ENST00000593008 GMCL1Q96IK5 515 aa11.24□□□□□ -0.61
DDX39A-220ENST00000593008 TMX3Q96JJ7 454 aa11.24□□□□□ -0.61
DDX39A-220ENST00000593008 CWC22Q9HCG8 908 aaKnown RBP11.24□□□□□ -0.61
DDX39A-220ENST00000593008 GOPCQ9HD26 462 aa11.24□□□□□ -0.61
DDX39A-220ENST00000593008 RABGAP1Q9Y3P9 1069 aa11.24□□□□□ -0.61
DDX39A-220ENST00000593008 RBM19Q9Y4C8 960 aaKnown RBP11.24□□□□□ -0.61
DDX39A-220ENST00000593008 RLFQ13129 1914 aa11.24□□□□□ -0.61
DDX39A-220ENST00000593008 NID2Q14112 1375 aa11.24□□□□□ -0.61
DDX39A-220ENST00000593008 PALM3A6NDB9 673 aaPredicted RBP11.23□□□□□ -0.61
DDX39A-220ENST00000593008 TMEM232C9JQI7 657 aa11.23□□□□□ -0.61
DDX39A-220ENST00000593008 WDR46O15213 610 aaKnown RBP11.23□□□□□ -0.61
DDX39A-220ENST00000593008 CYTH3O43739 400 aa11.23□□□□□ -0.61
DDX39A-220ENST00000593008 PFKFB2O60825 505 aa11.23□□□□□ -0.61
DDX39A-220ENST00000593008 NT5C2P49902 561 aa11.23□□□□□ -0.61
DDX39A-220ENST00000593008 FUT2Q10981 343 aa11.23□□□□□ -0.61
DDX39A-220ENST00000593008 PLS1Q14651 629 aa11.23□□□□□ -0.61
DDX39A-220ENST00000593008 CCDC178Q5BJE1 867 aa11.23□□□□□ -0.61
DDX39A-220ENST00000593008 TMTC3Q6ZXV5 915 aa11.23□□□□□ -0.61
DDX39A-220ENST00000593008 SPRYD3Q8NCJ5 442 aa11.23□□□□□ -0.61
DDX39A-220ENST00000593008 SLAIN1Q8ND83 568 aa11.23□□□□□ -0.61
DDX39A-220ENST00000593008 DCAF4Q8WV16 495 aa11.23□□□□□ -0.61
DDX39A-220ENST00000593008 GTF3C6Q969F1 213 aa11.23□□□□□ -0.61
DDX39A-220ENST00000593008 ATG4CQ96DT6 458 aa11.23□□□□□ -0.61
DDX39A-220ENST00000593008 MTA3Q9BTC8 594 aa11.23□□□□□ -0.61
DDX39A-220ENST00000593008 TMEM106CQ9BVX2 250 aa11.23□□□□□ -0.61
DDX39A-220ENST00000593008 HOXC10Q9NYD6 342 aa11.23□□□□□ -0.61
DDX39A-220ENST00000593008 GJD2Q9UKL4 321 aa11.23□□□□□ -0.61
DDX39A-220ENST00000593008 LIMCH1Q9UPQ0 1083 aa11.23□□□□□ -0.61
DDX39A-220ENST00000593008 CNTNAP5Q8WYK1 1306 aa11.23□□□□□ -0.61
DDX39A-220ENST00000593008 A0A0G2JMZ2 1700 aa11.22□□□□□ -0.61
DDX39A-220ENST00000593008 INHAP05111 366 aa11.22□□□□□ -0.61
DDX39A-220ENST00000593008 PARP1P09874 1014 aaKnown RBP11.22□□□□□ -0.61
DDX39A-220ENST00000593008 CYP2B6P20813 491 aa11.22□□□□□ -0.61
DDX39A-220ENST00000593008 MAPK4P31152 587 aa11.22□□□□□ -0.61
DDX39A-220ENST00000593008 DSG3P32926 999 aa11.22□□□□□ -0.61
DDX39A-220ENST00000593008 FOSBP53539 338 aa11.22□□□□□ -0.61
DDX39A-220ENST00000593008 CCNA1P78396 465 aa11.22□□□□□ -0.61
DDX39A-220ENST00000593008 IRF5Q13568 498 aa11.22□□□□□ -0.61
DDX39A-220ENST00000593008 NTRK3Q16288 839 aa11.22□□□□□ -0.61
DDX39A-220ENST00000593008 LBX2Q6XYB7 198 aa11.22□□□□□ -0.61
DDX39A-220ENST00000593008 GPR142Q7Z601 462 aa11.22□□□□□ -0.61
DDX39A-220ENST00000593008 PLEKHH3Q7Z736 793 aa11.22□□□□□ -0.61
DDX39A-220ENST00000593008 FANCBQ8NB91 859 aa11.22□□□□□ -0.61
DDX39A-220ENST00000593008 KIFC2Q96AC6 838 aa11.22□□□□□ -0.61
DDX39A-220ENST00000593008 SHISA4Q96DD7 197 aa11.22□□□□□ -0.61
DDX39A-220ENST00000593008 AIFM3Q96NN9 605 aa11.22□□□□□ -0.61
DDX39A-220ENST00000593008 VAT1LQ9HCJ6 419 aa11.22□□□□□ -0.61
DDX39A-220ENST00000593008 MKI67P46013 3256 aaKnown RBP11.22□□□□□ -0.61
DDX39A-220ENST00000593008 BAZ2BQ9UIF8 2168 aaKnown RBP11.21□□□□□ -0.61
DDX39A-220ENST00000593008 KLRF2D3W0D1 207 aa11.21□□□□□ -0.61
DDX39A-220ENST00000593008 PPP1R11O60927 126 aaPredicted RBP11.21□□□□□ -0.61
DDX39A-220ENST00000593008 CCL5P13501 91 aa11.21□□□□□ -0.61
DDX39A-220ENST00000593008 TRIM32Q13049 653 aa11.21□□□□□ -0.61
DDX39A-220ENST00000593008 IKQ13123 557 aaPredicted RBP11.21□□□□□ -0.61
DDX39A-220ENST00000593008 ANKRD1Q15327 319 aa11.21□□□□□ -0.61
DDX39A-220ENST00000593008 SYDE2Q5VT97 1194 aa11.21□□□□□ -0.61
DDX39A-220ENST00000593008 CCDC174Q6PII3 467 aa11.21□□□□□ -0.61
DDX39A-220ENST00000593008 HOMER1Q86YM7 354 aa11.21□□□□□ -0.61
DDX39A-220ENST00000593008 CTCFLQ8NI51 663 aaPredicted RBP11.21□□□□□ -0.61
DDX39A-220ENST00000593008 DDX11Q96FC9 970 aa11.21□□□□□ -0.61
DDX39A-220ENST00000593008 ZNF274Q96GC6 653 aaPredicted RBP11.21□□□□□ -0.61
DDX39A-220ENST00000593008 PIGSQ96S52 555 aa11.21□□□□□ -0.61
DDX39A-220ENST00000593008 NUDT12Q9BQG2 462 aa11.21□□□□□ -0.61
DDX39A-220ENST00000593008 MOV10L1Q9BXT6 1211 aaKnown RBP11.21□□□□□ -0.61
DDX39A-220ENST00000593008 RNF208Q9H0X6 261 aa11.21□□□□□ -0.61
DDX39A-220ENST00000593008 UNC93B1Q9H1C4 597 aa11.21□□□□□ -0.61
DDX39A-220ENST00000593008 SLKQ9H2G2 1235 aaPredicted RBP11.21□□□□□ -0.61
DDX39A-220ENST00000593008 GJB4Q9NTQ9 266 aa11.21□□□□□ -0.61
DDX39A-220ENST00000593008 PRR12Q9ULL5 1215 aa11.21□□□□□ -0.61
DDX39A-220ENST00000593008 PTPDC1A2A3K4 754 aa11.2□□□□□ -0.62
DDX39A-220ENST00000593008 K7ELQ4 463 aaPredicted RBP11.2□□□□□ -0.62
DDX39A-220ENST00000593008 ADAMTS3O15072 1205 aa11.2□□□□□ -0.62
DDX39A-220ENST00000593008 DHX16O60231 1041 aaKnown RBP11.2□□□□□ -0.62
DDX39A-220ENST00000593008 SLC34A2O95436 690 aa11.2□□□□□ -0.62
DDX39A-220ENST00000593008 UBXN2AP68543 259 aa11.2□□□□□ -0.62
DDX39A-220ENST00000593008 TMEM132BQ14DG7 1078 aa11.2□□□□□ -0.62
DDX39A-220ENST00000593008 ASPRV1Q53RT3 343 aa11.2□□□□□ -0.62
DDX39A-220ENST00000593008 PPP4R3BQ5MIZ7 849 aa11.2□□□□□ -0.62
DDX39A-220ENST00000593008 MORN1Q5T089 497 aa11.2□□□□□ -0.62
DDX39A-220ENST00000593008 SYNE3Q6ZMZ3 975 aa11.2□□□□□ -0.62
DDX39A-220ENST00000593008 ADGRF4Q8IZF3 695 aa11.2□□□□□ -0.62
DDX39A-220ENST00000593008 NSUN7Q8NE18 718 aaKnown RBP11.2□□□□□ -0.62
DDX39A-220ENST00000593008 PXYLP1Q8TE99 480 aa11.2□□□□□ -0.62
DDX39A-220ENST00000593008 SOCS4Q8WXH5 440 aa11.2□□□□□ -0.62
DDX39A-220ENST00000593008 TRIB2Q92519 343 aa11.2□□□□□ -0.62
DDX39A-220ENST00000593008 GPKOWQ92917 476 aaPredicted RBP eCLIP11.2□□□□□ -0.628e-6■■□□□ 13.6
DDX39A-220ENST00000593008 SNX21Q969T3 373 aa11.2□□□□□ -0.62
DDX39A-220ENST00000593008 SLF1Q9BQI6 1058 aa11.2□□□□□ -0.62
DDX39A-220ENST00000593008 SPATC1LQ9H0A9 340 aa11.2□□□□□ -0.62
DDX39A-220ENST00000593008 JMJD4Q9H9V9 463 aa11.2□□□□□ -0.62
DDX39A-220ENST00000593008 PPP1R9AQ9ULJ8 1098 aa11.2□□□□□ -0.62
DDX39A-220ENST00000593008 SYNPO2Q9UMS6 1093 aa11.2□□□□□ -0.62
DDX39A-220ENST00000593008 MGAMO43451 1857 aa11.2□□□□□ -0.62
DDX39A-220ENST00000593008 COL11A1P12107 1806 aaPredicted RBP11.19□□□□□ -0.62
DDX39A-220ENST00000593008 KIAA0100Q14667 2235 aaKnown RBP11.19□□□□□ -0.62
DDX39A-220ENST00000593008 ZNF536O15090 1300 aa11.19□□□□□ -0.62
DDX39A-220ENST00000593008 VWA5AO00534 786 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms