RNA–Protein interactions for RNA: ENST00000572365.1

SF3B3-214, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 575 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-214ENST00000572365 CSADQ9Y600 493 aa7.56□□□□□ -1.2
SF3B3-214ENST00000572365 TULP4Q9NRJ4 1543 aa7.56□□□□□ -1.2
SF3B3-214ENST00000572365 CPDO75976 1380 aa7.56□□□□□ -1.2
SF3B3-214ENST00000572365 COL18A1P39060 1754 aa7.56□□□□□ -1.2
SF3B3-214ENST00000572365 COL24A1Q17RW2 1714 aa7.55□□□□□ -1.2
SF3B3-214ENST00000572365 ARHGEF28Q8N1W1 1705 aaKnown RBP7.55□□□□□ -1.2
SF3B3-214ENST00000572365 WDR17Q8IZU2 1322 aa7.55□□□□□ -1.2
SF3B3-214ENST00000572365 PRAMEF27A3QJZ7 478 aa7.55□□□□□ -1.2
SF3B3-214ENST00000572365 PLCG1P19174 1290 aa7.55□□□□□ -1.2
SF3B3-214ENST00000572365 CASP7P55210 303 aa7.55□□□□□ -1.2
SF3B3-214ENST00000572365 INSM1Q01101 510 aaPredicted RBP7.55□□□□□ -1.2
SF3B3-214ENST00000572365 SOX4Q06945 474 aaPredicted RBP7.55□□□□□ -1.2
SF3B3-214ENST00000572365 GRIK4Q16099 956 aa7.55□□□□□ -1.2
SF3B3-214ENST00000572365 PPM1JQ5JR12 505 aa7.55□□□□□ -1.2
SF3B3-214ENST00000572365 ANKRD34AQ69YU3 496 aa7.55□□□□□ -1.2
SF3B3-214ENST00000572365 SHISA2Q6UWI4 295 aa7.55□□□□□ -1.2
SF3B3-214ENST00000572365 C16orf71Q8IYS4 520 aaPredicted RBP7.55□□□□□ -1.2
SF3B3-214ENST00000572365 C19orf47Q8N9M1 422 aaKnown RBP7.55□□□□□ -1.2
SF3B3-214ENST00000572365 RNF214Q8ND24 703 aa7.55□□□□□ -1.2
SF3B3-214ENST00000572365 ATXN3LQ9H3M9 355 aa7.55□□□□□ -1.2
SF3B3-214ENST00000572365 ANTXR1Q9H6X2 564 aa7.55□□□□□ -1.2
SF3B3-214ENST00000572365 USP19O94966 1318 aa7.54□□□□□ -1.2
SF3B3-214ENST00000572365 NHSQ6T4R5 1651 aa7.54□□□□□ -1.2
SF3B3-214ENST00000572365 N4BP2Q86UW6 1770 aaPredicted RBP7.54□□□□□ -1.2
SF3B3-214ENST00000572365 LOC100996750A0A140TA64 210 aa7.54□□□□□ -1.2
SF3B3-214ENST00000572365 PGRP06401 933 aa7.54□□□□□ -1.2
SF3B3-214ENST00000572365 ETF1P62495 437 aaKnown RBP7.54□□□□□ -1.2
SF3B3-214ENST00000572365 Q6ZS46 218 aa7.54□□□□□ -1.2
SF3B3-214ENST00000572365 TAB3Q8N5C8 712 aaPredicted RBP7.54□□□□□ -1.2
SF3B3-214ENST00000572365 HNRNPLLQ8WVV9 542 aaKnown RBP7.54□□□□□ -1.2
SF3B3-214ENST00000572365 TM9SF2Q99805 663 aa7.54□□□□□ -1.2
SF3B3-214ENST00000572365 KRTAP4-6Q9BYQ5 205 aa7.54□□□□□ -1.2
SF3B3-214ENST00000572365 AP4E1Q9UPM8 1137 aa7.54□□□□□ -1.2
SF3B3-214ENST00000572365 BRD4O60885 1362 aaPredicted RBP7.54□□□□□ -1.2
SF3B3-214ENST00000572365 ITSN1Q15811 1721 aa7.53□□□□□ -1.2
SF3B3-214ENST00000572365 SLC22A31A6NKX4 558 aa7.53□□□□□ -1.2
SF3B3-214ENST00000572365 DNAJA2O60884 412 aa7.53□□□□□ -1.2
SF3B3-214ENST00000572365 DRD2P14416 443 aa7.53□□□□□ -1.2
SF3B3-214ENST00000572365 COL8A1P27658 744 aa7.53□□□□□ -1.2
SF3B3-214ENST00000572365 CDCP2Q5VXM1 449 aa7.53□□□□□ -1.2
SF3B3-214ENST00000572365 FDX2Q6P4F2 183 aa7.53□□□□□ -1.2
SF3B3-214ENST00000572365 NOP9Q86U38 636 aaKnown RBP7.53□□□□□ -1.2
SF3B3-214ENST00000572365 AMIGO3Q86WK7 504 aa7.53□□□□□ -1.2
SF3B3-214ENST00000572365 C12orf50Q8NA57 414 aaPredicted RBP7.53□□□□□ -1.2
SF3B3-214ENST00000572365 C2CD4AQ8NCU7 369 aaPredicted RBP7.53□□□□□ -1.2
SF3B3-214ENST00000572365 MKL1Q969V6 931 aa7.53□□□□□ -1.2
SF3B3-214ENST00000572365 ACSF2Q96CM8 615 aaPredicted RBP7.53□□□□□ -1.2
SF3B3-214ENST00000572365 SCARF2Q96GP6 870 aaPredicted RBP7.53□□□□□ -1.2
SF3B3-214ENST00000572365 ZSWIM4Q9H7M6 989 aa7.53□□□□□ -1.2
SF3B3-214ENST00000572365 AKTIPQ9H8T0 292 aa7.53□□□□□ -1.2
SF3B3-214ENST00000572365 PICK1Q9NRD5 415 aa7.53□□□□□ -1.2
SF3B3-214ENST00000572365 SIRPGQ9P1W8 387 aa7.53□□□□□ -1.2
SF3B3-214ENST00000572365 CD2APQ9Y5K6 639 aa7.53□□□□□ -1.2
SF3B3-214ENST00000572365 AATKQ6ZMQ8 1374 aa7.53□□□□□ -1.2
SF3B3-214ENST00000572365 TNRC18O15417 2968 aaPredicted RBP7.53□□□□□ -1.2
SF3B3-214ENST00000572365 A0A0G2JLW4 131 aa7.52□□□□□ -1.21
SF3B3-214ENST00000572365 NEFMP07197 916 aa7.52□□□□□ -1.21
SF3B3-214ENST00000572365 GUCY2CP25092 1073 aa7.52□□□□□ -1.21
SF3B3-214ENST00000572365 NRG1Q02297 640 aaPredicted RBP7.52□□□□□ -1.21
SF3B3-214ENST00000572365 TTLL4Q14679 1199 aa7.52□□□□□ -1.21
SF3B3-214ENST00000572365 INTS3Q68E01 1043 aaKnown RBP7.52□□□□□ -1.21
SF3B3-214ENST00000572365 OVOS1Q6IE37 1185 aa7.52□□□□□ -1.21
SF3B3-214ENST00000572365 RUFY4Q6ZNE9 571 aa7.52□□□□□ -1.21
SF3B3-214ENST00000572365 MCATQ8IVS2 390 aaKnown RBP7.52□□□□□ -1.21
SF3B3-214ENST00000572365 MRPL41Q8IXM3 137 aaKnown RBP7.52□□□□□ -1.21
SF3B3-214ENST00000572365 AGGF1Q8N302 714 aaeCLIP7.52□□□□□ -1.21
SF3B3-214ENST00000572365 ZNF507Q8TCN5 953 aa7.52□□□□□ -1.21
SF3B3-214ENST00000572365 ATG4CQ96DT6 458 aa7.52□□□□□ -1.21
SF3B3-214ENST00000572365 MPHOSPH9Q99550 1183 aa7.52□□□□□ -1.21
SF3B3-214ENST00000572365 TRIM55Q9BYV6 548 aa7.52□□□□□ -1.21
SF3B3-214ENST00000572365 TNKS2Q9H2K2 1166 aa7.52□□□□□ -1.21
SF3B3-214ENST00000572365 CNNM2Q9H8M5 875 aa7.52□□□□□ -1.21
SF3B3-214ENST00000572365 ACTR10Q9NZ32 417 aa7.52□□□□□ -1.21
SF3B3-214ENST00000572365 TJP2Q9UDY2 1190 aa7.52□□□□□ -1.21
SF3B3-214ENST00000572365 CCNL1Q9UK58 526 aaPredicted RBP7.52□□□□□ -1.21
SF3B3-214ENST00000572365 R3HCC1Q9Y3T6 440 aaKnown RBP7.52□□□□□ -1.21
SF3B3-214ENST00000572365 ACTL7BQ9Y614 415 aa7.52□□□□□ -1.21
SF3B3-214ENST00000572365 QSER1Q2KHR3 1735 aa7.52□□□□□ -1.21
SF3B3-214ENST00000572365 C9orf172C9J069 976 aa7.51□□□□□ -1.21
SF3B3-214ENST00000572365 NME1P15531 152 aaKnown RBP7.51□□□□□ -1.21
SF3B3-214ENST00000572365 CAP2P40123 477 aa7.51□□□□□ -1.21
SF3B3-214ENST00000572365 NLRC3Q7RTR2 1065 aa7.51□□□□□ -1.21
SF3B3-214ENST00000572365 DYMQ7RTS9 669 aa7.51□□□□□ -1.21
SF3B3-214ENST00000572365 ALYREFQ86V81 257 aaKnown RBP7.51□□□□□ -1.21
SF3B3-214ENST00000572365 ARHGEF25Q86VW2 580 aa7.51□□□□□ -1.21
SF3B3-214ENST00000572365 HID1Q8IV36 788 aa7.51□□□□□ -1.21
SF3B3-214ENST00000572365 SLFN12Q8IYM2 578 aa7.51□□□□□ -1.21
SF3B3-214ENST00000572365 KCT2Q8NC54 265 aa7.51□□□□□ -1.21
SF3B3-214ENST00000572365 LTV1Q96GA3 475 aaPredicted RBP7.51□□□□□ -1.21
SF3B3-214ENST00000572365 TMEM87BQ96K49 555 aa7.51□□□□□ -1.21
SF3B3-214ENST00000572365 NACC1Q96RE7 527 aa7.51□□□□□ -1.21
SF3B3-214ENST00000572365 PIF1Q9H611 641 aa7.51□□□□□ -1.21
SF3B3-214ENST00000572365 BCL9O00512 1426 aa7.51□□□□□ -1.21
SF3B3-214ENST00000572365 POLR3AO14802 1390 aaPredicted RBP7.5□□□□□ -1.21
SF3B3-214ENST00000572365 A0A1W2PQH9 124 aa7.5□□□□□ -1.21
SF3B3-214ENST00000572365 K7ELQ4 463 aaPredicted RBP7.5□□□□□ -1.21
SF3B3-214ENST00000572365 TNFRSF10CO14798 259 aa7.5□□□□□ -1.21
SF3B3-214ENST00000572365 U2SURPO15042 1029 aaKnown RBP7.5□□□□□ -1.21
SF3B3-214ENST00000572365 FOXN1O15353 648 aa7.5□□□□□ -1.21
SF3B3-214ENST00000572365 ALX3O95076 343 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms