RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 RAVER2Q9HCJ3 691 aaKnown RBP25.21■■□□□ 1.63
SNX1-206ENST00000559389 FAM217BQ9NTX9 383 aaPredicted RBP25.21■■□□□ 1.63
SNX1-206ENST00000559389 DHX16O60231 1041 aaKnown RBP25.2■■□□□ 1.62
SNX1-206ENST00000559389 SMARCA1P28370 1054 aa25.2■■□□□ 1.62
SNX1-206ENST00000559389 CDC27P30260 824 aa25.2■■□□□ 1.62
SNX1-206ENST00000559389 PPP2R5BQ15173 497 aa25.2■■□□□ 1.62
SNX1-206ENST00000559389 CPXCR1Q8N123 301 aa25.2■■□□□ 1.62
SNX1-206ENST00000559389 ZNF236Q9UL36 1845 aa25.2■■□□□ 1.62
SNX1-206ENST00000559389 CNTNAP5Q8WYK1 1306 aa25.19■■□□□ 1.62
SNX1-206ENST00000559389 ICAM1P05362 532 aa25.19■■□□□ 1.62
SNX1-206ENST00000559389 MAPK4P31152 587 aa25.19■■□□□ 1.62
SNX1-206ENST00000559389 COPB2P35606 906 aa25.19■■□□□ 1.62
SNX1-206ENST00000559389 STAT3P40763 770 aa25.19■■□□□ 1.62
SNX1-206ENST00000559389 FCGRTP55899 365 aa25.19■■□□□ 1.62
SNX1-206ENST00000559389 KIF22Q14807 665 aa25.19■■□□□ 1.62
SNX1-206ENST00000559389 SNRNP48Q6IEG0 339 aaKnown RBP25.19■■□□□ 1.62
SNX1-206ENST00000559389 CCDC174Q6PII3 467 aa25.19■■□□□ 1.62
SNX1-206ENST00000559389 SRBD1Q8N5C6 995 aaKnown RBP25.19■■□□□ 1.62
SNX1-206ENST00000559389 IL27Q8NEV9 243 aa25.19■■□□□ 1.62
SNX1-206ENST00000559389 EFCC1Q9HA90 598 aa25.19■■□□□ 1.62
SNX1-206ENST00000559389 TPCN1Q9ULQ1 816 aa25.19■■□□□ 1.62
SNX1-206ENST00000559389 PLXNB2O15031 1838 aa25.19■■□□□ 1.62
SNX1-206ENST00000559389 SLC25A27O95847 323 aa25.18■■□□□ 1.62
SNX1-206ENST00000559389 ERCC3P19447 782 aa25.18■■□□□ 1.62
SNX1-206ENST00000559389 PSMC4P43686 418 aa25.18■■□□□ 1.62
SNX1-206ENST00000559389 QRICH1Q2TAL8 776 aa25.18■■□□□ 1.62
SNX1-206ENST00000559389 TRIM47Q96LD4 638 aa25.18■■□□□ 1.62
SNX1-206ENST00000559389 PRDM10Q9NQV6 1147 aa25.18■■□□□ 1.62
SNX1-206ENST00000559389 CASP8AP2Q9UKL3 1982 aa25.18■■□□□ 1.62
SNX1-206ENST00000559389 CCDC196A0A1B0GTZ2 297 aa25.17■■□□□ 1.62
SNX1-206ENST00000559389 FUT2Q10981 343 aa25.17■■□□□ 1.62
SNX1-206ENST00000559389 NOL8Q76FK4 1167 aaKnown RBP25.17■■□□□ 1.62
SNX1-206ENST00000559389 AGBL1Q96MI9 1066 aa25.17■■□□□ 1.62
SNX1-206ENST00000559389 VAT1LQ9HCJ6 419 aa25.17■■□□□ 1.62
SNX1-206ENST00000559389 PNMA2Q9UL42 364 aa25.17■■□□□ 1.62
SNX1-206ENST00000559389 CCPG1Q9ULG6 757 aa25.17■■□□□ 1.62
SNX1-206ENST00000559389 RBBP6Q7Z6E9 1792 aaKnown RBP25.16■■□□□ 1.62
SNX1-206ENST00000559389 MYH6P13533 1939 aa25.16■■□□□ 1.62
SNX1-206ENST00000559389 TNPO2O14787 897 aaKnown RBP25.16■■□□□ 1.62
SNX1-206ENST00000559389 ECM2O94769 699 aaPredicted RBP25.16■■□□□ 1.62
SNX1-206ENST00000559389 CMTR1Q8N1G2 835 aaKnown RBP25.16■■□□□ 1.62
SNX1-206ENST00000559389 MROH8Q9H579 483 aa25.16■■□□□ 1.62
SNX1-206ENST00000559389 NCOA5Q9HCD5 579 aaKnown RBP25.16■■□□□ 1.62
SNX1-206ENST00000559389 RIPK3Q9Y572 518 aa25.16■■□□□ 1.62
SNX1-206ENST00000559389 ZBTB5O15062 677 aa25.15■■□□□ 1.62
SNX1-206ENST00000559389 LARGE1O95461 756 aa25.15■■□□□ 1.62
SNX1-206ENST00000559389 TAL1P17542 331 aaPredicted RBP25.15■■□□□ 1.62
SNX1-206ENST00000559389 ADD1P35611 737 aaKnown RBP25.15■■□□□ 1.62
SNX1-206ENST00000559389 CCT2P78371 535 aaKnown RBP25.15■■□□□ 1.62
SNX1-206ENST00000559389 GPR142Q7Z601 462 aa25.15■■□□□ 1.62
SNX1-206ENST00000559389 NCAPG2Q86XI2 1143 aa25.15■■□□□ 1.62
SNX1-206ENST00000559389 HOMER1Q86YM7 354 aa25.15■■□□□ 1.62
SNX1-206ENST00000559389 CCAR1Q8IX12 1150 aaKnown RBP25.15■■□□□ 1.62
SNX1-206ENST00000559389 PIGSQ96S52 555 aa25.15■■□□□ 1.62
SNX1-206ENST00000559389 PCNTO95613 3336 aa25.15■■□□□ 1.62
SNX1-206ENST00000559389 ST18O60284 1047 aa25.14■■□□□ 1.62
SNX1-206ENST00000559389 PFKFB2O60825 505 aa25.14■■□□□ 1.62
SNX1-206ENST00000559389 PPP1R11O60927 126 aaPredicted RBP25.14■■□□□ 1.62
SNX1-206ENST00000559389 FMNL1O95466 1100 aaPredicted RBP25.14■■□□□ 1.62
SNX1-206ENST00000559389 STK3Q13188 491 aa25.14■■□□□ 1.62
SNX1-206ENST00000559389 ARHGEF6Q15052 776 aa25.14■■□□□ 1.62
SNX1-206ENST00000559389 TKFCQ3LXA3 575 aa25.14■■□□□ 1.62
SNX1-206ENST00000559389 RNF146Q9NTX7 359 aa25.14■■□□□ 1.62
SNX1-206ENST00000559389 GNRH1P01148 92 aa25.13■■□□□ 1.61
SNX1-206ENST00000559389 SCRN1Q12765 414 aa25.13■■□□□ 1.61
SNX1-206ENST00000559389 NTRK3Q16288 839 aa25.13■■□□□ 1.61
SNX1-206ENST00000559389 ME3Q16798 604 aa25.13■■□□□ 1.61
SNX1-206ENST00000559389 WDR78Q5VTH9 848 aa25.13■■□□□ 1.61
SNX1-206ENST00000559389 DHX30Q7L2E3 1194 aaKnown RBP eCLIP25.13■■□□□ 1.61
SNX1-206ENST00000559389 OTOP1Q7RTM1 612 aa25.13■■□□□ 1.61
SNX1-206ENST00000559389 PLEKHH3Q7Z736 793 aa25.13■■□□□ 1.61
SNX1-206ENST00000559389 CHST13Q8NET6 341 aa25.13■■□□□ 1.61
SNX1-206ENST00000559389 RRP36Q96EU6 259 aaKnown RBP25.13■■□□□ 1.61
SNX1-206ENST00000559389 SLKQ9H2G2 1235 aaPredicted RBP25.13■■□□□ 1.61
SNX1-206ENST00000559389 LIMCH1Q9UPQ0 1083 aa25.13■■□□□ 1.61
SNX1-206ENST00000559389 PNMA6FA0A0J9YX94 578 aa25.12■■□□□ 1.61
SNX1-206ENST00000559389 ALAS1P13196 640 aa25.12■■□□□ 1.61
SNX1-206ENST00000559389 SLC4A3P48751 1232 aa25.12■■□□□ 1.61
SNX1-206ENST00000559389 FBXO11Q86XK2 927 aa25.12■■□□□ 1.61
SNX1-206ENST00000559389 CCDC82Q8N4S0 544 aa25.12■■□□□ 1.61
SNX1-206ENST00000559389 COA7Q96BR5 231 aa25.12■■□□□ 1.61
SNX1-206ENST00000559389 AMNQ9BXJ7 453 aa25.12■■□□□ 1.61
SNX1-206ENST00000559389 CWC22Q9HCG8 908 aaKnown RBP25.12■■□□□ 1.61
SNX1-206ENST00000559389 HOMER2Q9NSB8 354 aa25.12■■□□□ 1.61
SNX1-206ENST00000559389 FBXO40Q9UH90 709 aa25.12■■□□□ 1.61
SNX1-206ENST00000559389 IFNAR1P17181 557 aa25.11■■□□□ 1.61
SNX1-206ENST00000559389 PTPREP23469 700 aa25.11■■□□□ 1.61
SNX1-206ENST00000559389 GRB14Q14449 540 aa25.11■■□□□ 1.61
SNX1-206ENST00000559389 USH1GQ495M9 461 aa25.11■■□□□ 1.61
SNX1-206ENST00000559389 SOCS4Q8WXH5 440 aa25.11■■□□□ 1.61
SNX1-206ENST00000559389 PIBF1Q8WXW3 757 aa25.11■■□□□ 1.61
SNX1-206ENST00000559389 GTF3C6Q969F1 213 aa25.11■■□□□ 1.61
SNX1-206ENST00000559389 ACAD9Q9H845 621 aa25.11■■□□□ 1.61
SNX1-206ENST00000559389 SEC63Q9UGP8 760 aaKnown RBP25.11■■□□□ 1.61
SNX1-206ENST00000559389 SRRDQ9UH36 339 aa25.11■■□□□ 1.61
SNX1-206ENST00000559389 TRIM17Q9Y577 477 aa25.11■■□□□ 1.61
SNX1-206ENST00000559389 IVNS1ABPQ9Y6Y0 642 aa25.11■■□□□ 1.61
SNX1-206ENST00000559389 ABCB11O95342 1321 aa25.11■■□□□ 1.61
SNX1-206ENST00000559389 CD2BP2O95400 341 aaKnown RBP25.1■■□□□ 1.61
SNX1-206ENST00000559389 MORN1Q5T089 497 aa25.1■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms