RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 PLS1Q14651 629 aa7.87□□□□□ -1.15
USP3-210ENST00000559192 RPS6KA1Q15418 735 aa7.87□□□□□ -1.15
USP3-210ENST00000559192 BLIDQ8IZY5 108 aa7.87□□□□□ -1.15
USP3-210ENST00000559192 CRACR2BQ8N4Y2 399 aaPredicted RBP7.87□□□□□ -1.15
USP3-210ENST00000559192 MGARPQ8TDB4 240 aa7.87□□□□□ -1.15
USP3-210ENST00000559192 ZMAT2Q96NC0 199 aaKnown RBP7.87□□□□□ -1.15
USP3-210ENST00000559192 DPH5Q9H2P9 285 aa7.87□□□□□ -1.15
USP3-210ENST00000559192 BIN2Q9UBW5 565 aaPredicted RBP7.87□□□□□ -1.15
USP3-210ENST00000559192 EPHB4P54760 987 aa7.87□□□□□ -1.15
USP3-210ENST00000559192 COL9A3Q14050 684 aaPredicted RBP7.87□□□□□ -1.15
USP3-210ENST00000559192 DBN1Q16643 649 aa7.87□□□□□ -1.15
USP3-210ENST00000559192 KRT71Q3SY84 523 aa7.87□□□□□ -1.15
USP3-210ENST00000559192 MB21D1Q8N884 522 aa7.87□□□□□ -1.15
USP3-210ENST00000559192 RIN2Q8WYP3 895 aaPredicted RBP7.87□□□□□ -1.15
USP3-210ENST00000559192 KCNB2Q92953 911 aa7.87□□□□□ -1.15
USP3-210ENST00000559192 SOS2Q07890 1332 aaPredicted RBP7.87□□□□□ -1.15
USP3-210ENST00000559192 MROH5Q6ZUA9 1318 aa7.87□□□□□ -1.15
USP3-210ENST00000559192 A6NNZ2 444 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 H3BQF6 201 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 FTCDO95954 541 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 GJC1P36383 396 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 UBE3CQ15386 1083 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 TUBB8Q3ZCM7 444 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 RAD9BQ6WBX8 426 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 CEP128Q6ZU80 1094 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 ADAT2Q7Z6V5 191 aaKnown RBP7.86□□□□□ -1.15
USP3-210ENST00000559192 RPUSD2Q8IZ73 545 aaKnown RBP7.86□□□□□ -1.15
USP3-210ENST00000559192 GBP7Q8N8V2 638 aaPredicted RBP7.86□□□□□ -1.15
USP3-210ENST00000559192 PNKPQ96T60 521 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 SPATS2LQ9NUQ6 558 aaKnown RBP7.86□□□□□ -1.15
USP3-210ENST00000559192 FAM169AQ9Y6X4 670 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 ZNF185O15231 689 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 HEXIM1O94992 359 aaKnown RBP7.86□□□□□ -1.15
USP3-210ENST00000559192 SCG2P13521 617 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 GNA11P29992 359 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 EHHADHQ08426 723 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 MICAL1Q8TDZ2 1067 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 SNX29Q8TEQ0 813 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 LRRC45Q96CN5 670 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 TFCP2L1Q9NZI6 479 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 RIPOR2Q9Y4F9 1068 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 UTP18Q9Y5J1 556 aaKnown RBP eCLIP7.86□□□□□ -1.15
USP3-210ENST00000559192 OVOS2A0A0J9YW53 1432 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 OVOS2Q6IE36 1432 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 CYP2D7A0A087X1C5 515 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 EXOC5O00471 708 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 PLEKHA8P1O95397 391 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 GOLGA8HP0CJ92 632 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 PTPREP23469 700 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 KCNJ6P48051 423 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 E2F5Q15329 346 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 MCTP2Q6DN12 878 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 ZBTB38Q8NAP3 1195 aaPredicted RBP7.86□□□□□ -1.15
USP3-210ENST00000559192 LY9Q9HBG7 655 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 TSKSQ9UJT2 592 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 USP17L12C9JPN9 530 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 USP17L21D6R901 530 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 F8W031 263 aaPredicted RBP7.86□□□□□ -1.15
USP3-210ENST00000559192 RPSAP08865 295 aaKnown RBP7.86□□□□□ -1.15
USP3-210ENST00000559192 IFNAR1P17181 557 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 POLR2FP61218 127 aaKnown RBP7.86□□□□□ -1.15
USP3-210ENST00000559192 PPP1R7Q15435 360 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 UHMK1Q8TAS1 419 aaKnown RBP7.86□□□□□ -1.15
USP3-210ENST00000559192 PSMD1Q99460 953 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 SENP2Q9HC62 589 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 GPCPD1Q9NPB8 672 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 STK38LQ9Y2H1 464 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 PCDHA13Q9Y5I0 950 aa7.86□□□□□ -1.15
USP3-210ENST00000559192 TCP1P17987 556 aaKnown RBP7.85□□□□□ -1.15
USP3-210ENST00000559192 GYG1P46976 350 aa7.85□□□□□ -1.15
USP3-210ENST00000559192 SCARF1Q14162 830 aa7.85□□□□□ -1.15
USP3-210ENST00000559192 PPP2R5AQ15172 486 aa7.85□□□□□ -1.15
USP3-210ENST00000559192 SNCBQ16143 134 aa7.85□□□□□ -1.15
USP3-210ENST00000559192 RUFY4Q6ZNE9 571 aa7.85□□□□□ -1.15
USP3-210ENST00000559192 TACO1Q9BSH4 297 aaKnown RBP7.85□□□□□ -1.15
USP3-210ENST00000559192 STMN4Q9H169 189 aaPredicted RBP7.85□□□□□ -1.15
USP3-210ENST00000559192 MLXIPQ9HAP2 919 aa7.85□□□□□ -1.15
USP3-210ENST00000559192 USP31Q70CQ4 1352 aa7.85□□□□□ -1.15
USP3-210ENST00000559192 LOC102724159A0A0B4J2E5 919 aa7.85□□□□□ -1.15
USP3-210ENST00000559192 NCK2O43639 380 aa7.85□□□□□ -1.15
USP3-210ENST00000559192 SASH3O75995 380 aa7.85□□□□□ -1.15
USP3-210ENST00000559192 NONOQ15233 471 aaKnown RBP eCLIP7.85□□□□□ -1.15
USP3-210ENST00000559192 PWP2Q15269 919 aaKnown RBP7.85□□□□□ -1.15
USP3-210ENST00000559192 MMS22LQ6ZRQ5 1243 aa7.85□□□□□ -1.15
USP3-210ENST00000559192 HOOK3Q86VS8 718 aa7.85□□□□□ -1.15
USP3-210ENST00000559192 CACNA2D3Q8IZS8 1091 aa7.85□□□□□ -1.15
USP3-210ENST00000559192 SMCR8Q8TEV9 937 aaPredicted RBP7.85□□□□□ -1.15
USP3-210ENST00000559192 SMC6Q96SB8 1091 aa7.85□□□□□ -1.15
USP3-210ENST00000559192 MMS19Q96T76 1030 aa7.85□□□□□ -1.15
USP3-210ENST00000559192 NFU1Q9UMS0 254 aa7.85□□□□□ -1.15
USP3-210ENST00000559192 TFR2Q9UP52 801 aa7.85□□□□□ -1.15
USP3-210ENST00000559192 RFX7Q2KHR2 1363 aa7.85□□□□□ -1.15
USP3-210ENST00000559192 EIF4A3P38919 411 aaKnown RBP7.85□□□□□ -1.15
USP3-210ENST00000559192 CETN2P41208 172 aa7.85□□□□□ -1.15
USP3-210ENST00000559192 CALCRLQ16602 461 aa7.85□□□□□ -1.15
USP3-210ENST00000559192 PEX26Q7Z412 305 aa7.85□□□□□ -1.15
USP3-210ENST00000559192 CCDC50Q8IVM0 306 aa7.85□□□□□ -1.15
USP3-210ENST00000559192 KRIT1O00522 736 aa7.85□□□□□ -1.15
USP3-210ENST00000559192 LONP1P36776 959 aaKnown RBP7.85□□□□□ -1.15
USP3-210ENST00000559192 PPP1R2P41236 205 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms