RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 SYTL5Q8TDW5 730 aaPredicted RBP7.54□□□□□ -1.2
SCFD1-208ENST00000553278 COG1Q8WTW3 980 aa7.54□□□□□ -1.2
SCFD1-208ENST00000553278 DCAF4Q8WV16 495 aa7.54□□□□□ -1.2
SCFD1-208ENST00000553278 TRIM8Q9BZR9 551 aa7.54□□□□□ -1.2
SCFD1-208ENST00000553278 NOL6Q9H6R4 1146 aaKnown RBP7.54□□□□□ -1.2
SCFD1-208ENST00000553278 SUGCTQ9HAC7 445 aa7.54□□□□□ -1.2
SCFD1-208ENST00000553278 CYP26B1Q9NR63 512 aa7.54□□□□□ -1.2
SCFD1-208ENST00000553278 NOB1Q9ULX3 412 aaKnown RBP7.54□□□□□ -1.2
SCFD1-208ENST00000553278 DEAF1O75398 565 aaPredicted RBP7.53□□□□□ -1.2
SCFD1-208ENST00000553278 SCG5P05408 212 aa7.53□□□□□ -1.2
SCFD1-208ENST00000553278 ETV3P41162 512 aa7.53□□□□□ -1.2
SCFD1-208ENST00000553278 ECI1P42126 302 aa7.53□□□□□ -1.2
SCFD1-208ENST00000553278 SOX4Q06945 474 aaPredicted RBP7.53□□□□□ -1.2
SCFD1-208ENST00000553278 GFOD2Q3B7J2 385 aa7.53□□□□□ -1.2
SCFD1-208ENST00000553278 STYK1Q6J9G0 422 aa7.53□□□□□ -1.2
SCFD1-208ENST00000553278 SLC4A10Q6U841 1118 aa7.53□□□□□ -1.2
SCFD1-208ENST00000553278 SMYD4Q8IYR2 804 aaPredicted RBP7.53□□□□□ -1.2
SCFD1-208ENST00000553278 SMG8Q8ND04 991 aaKnown RBP7.53□□□□□ -1.2
SCFD1-208ENST00000553278 DNAJB8Q8NHS0 232 aa7.53□□□□□ -1.2
SCFD1-208ENST00000553278 MPHOSPH6Q99547 160 aaKnown RBP7.53□□□□□ -1.2
SCFD1-208ENST00000553278 ORAI3Q9BRQ5 295 aa7.53□□□□□ -1.2
SCFD1-208ENST00000553278 ASPNQ9BXN1 380 aa7.53□□□□□ -1.2
SCFD1-208ENST00000553278 RTFDC1Q9BY42 306 aaPredicted RBP7.53□□□□□ -1.2
SCFD1-208ENST00000553278 RNF208Q9H0X6 261 aa7.53□□□□□ -1.2
SCFD1-208ENST00000553278 LUC7LQ9NQ29 371 aaKnown RBP7.53□□□□□ -1.2
SCFD1-208ENST00000553278 PRR13Q9NZ81 148 aa7.53□□□□□ -1.2
SCFD1-208ENST00000553278 PCOLCE2Q9UKZ9 415 aa7.53□□□□□ -1.2
SCFD1-208ENST00000553278 SF3B6Q9Y3B4 125 aaKnown RBP7.53□□□□□ -1.2
SCFD1-208ENST00000553278 C11orf95C9JLR9 678 aaPredicted RBP7.52□□□□□ -1.21
SCFD1-208ENST00000553278 RFPL1O75677 317 aa7.52□□□□□ -1.21
SCFD1-208ENST00000553278 U2AF1L5P0DN76 240 aaPredicted RBP7.52□□□□□ -1.21
SCFD1-208ENST00000553278 ZSCAN20P17040 1043 aaPredicted RBP7.52□□□□□ -1.21
SCFD1-208ENST00000553278 ASPAP45381 313 aa7.52□□□□□ -1.21
SCFD1-208ENST00000553278 ID4P47928 161 aa7.52□□□□□ -1.21
SCFD1-208ENST00000553278 IL2P60568 153 aa7.52□□□□□ -1.21
SCFD1-208ENST00000553278 U2AF1Q01081 240 aaKnown RBP eCLIP7.52□□□□□ -1.21
SCFD1-208ENST00000553278 AMPD2Q01433 879 aa7.52□□□□□ -1.21
SCFD1-208ENST00000553278 GUCY1A3Q02108 690 aa7.52□□□□□ -1.21
SCFD1-208ENST00000553278 SAFB2Q14151 953 aaKnown RBP eCLIP7.52□□□□□ -1.21
SCFD1-208ENST00000553278 SLC35F1Q5T1Q4 408 aa7.52□□□□□ -1.21
SCFD1-208ENST00000553278 SYCP2LQ5T4T6 812 aa7.52□□□□□ -1.21
SCFD1-208ENST00000553278 IQSEC1Q6DN90 963 aa7.52□□□□□ -1.21
SCFD1-208ENST00000553278 KSR2Q6VAB6 950 aa7.52□□□□□ -1.21
SCFD1-208ENST00000553278 FIBCD1Q8N539 461 aa7.52□□□□□ -1.21
SCFD1-208ENST00000553278 MAGEB6Q8N7X4 407 aa7.52□□□□□ -1.21
SCFD1-208ENST00000553278 EDARADDQ8WWZ3 215 aa7.52□□□□□ -1.21
SCFD1-208ENST00000553278 VWCEQ96DN2 955 aa7.52□□□□□ -1.21
SCFD1-208ENST00000553278 FBXL18Q96ME1 805 aa7.52□□□□□ -1.21
SCFD1-208ENST00000553278 MENTQ9BUN1 341 aa7.52□□□□□ -1.21
SCFD1-208ENST00000553278 SAMD15Q9P1V8 674 aa7.52□□□□□ -1.21
SCFD1-208ENST00000553278 TRAF6Q9Y4K3 522 aa7.52□□□□□ -1.21
SCFD1-208ENST00000553278 PCDHA9Q9Y5H5 950 aa7.52□□□□□ -1.21
SCFD1-208ENST00000553278 CT47B1P0C2W7 299 aaPredicted RBP7.51□□□□□ -1.21
SCFD1-208ENST00000553278 ITIH2P19823 946 aa7.51□□□□□ -1.21
SCFD1-208ENST00000553278 FAPQ12884 760 aa7.51□□□□□ -1.21
SCFD1-208ENST00000553278 LETMD1Q6P1Q0 360 aa7.51□□□□□ -1.21
SCFD1-208ENST00000553278 MTDHQ86UE4 582 aaKnown RBP7.51□□□□□ -1.21
SCFD1-208ENST00000553278 RNF141Q8WVD5 230 aa7.51□□□□□ -1.21
SCFD1-208ENST00000553278 JPH3Q8WXH2 748 aaPredicted RBP7.51□□□□□ -1.21
SCFD1-208ENST00000553278 ZDHHC15Q96MV8 337 aa7.51□□□□□ -1.21
SCFD1-208ENST00000553278 ZNF700Q9H0M5 742 aa7.51□□□□□ -1.21
SCFD1-208ENST00000553278 GSX1Q9H4S2 264 aaPredicted RBP7.51□□□□□ -1.21
SCFD1-208ENST00000553278 GPR55Q9Y2T6 319 aaPredicted RBP7.51□□□□□ -1.21
SCFD1-208ENST00000553278 TNKSO95271 1327 aa7.51□□□□□ -1.21
SCFD1-208ENST00000553278 GAS7O60861 476 aa7.5□□□□□ -1.21
SCFD1-208ENST00000553278 ABLIM3O94929 683 aa7.5□□□□□ -1.21
SCFD1-208ENST00000553278 NID1P14543 1247 aa7.5□□□□□ -1.21
SCFD1-208ENST00000553278 PRSS53Q2L4Q9 553 aa7.5□□□□□ -1.21
SCFD1-208ENST00000553278 RGL3Q3MIN7 710 aa7.5□□□□□ -1.21
SCFD1-208ENST00000553278 CXorf57Q6NSI4 855 aaKnown RBP7.5□□□□□ -1.21
SCFD1-208ENST00000553278 ACAD11Q709F0 780 aa7.5□□□□□ -1.21
SCFD1-208ENST00000553278 ILDR2Q71H61 639 aa7.5□□□□□ -1.21
SCFD1-208ENST00000553278 C12orf50Q8NA57 414 aaPredicted RBP7.5□□□□□ -1.21
SCFD1-208ENST00000553278 GALNT6Q8NCL4 622 aa7.5□□□□□ -1.21
SCFD1-208ENST00000553278 C1orf159Q96HA4 380 aa7.5□□□□□ -1.21
SCFD1-208ENST00000553278 BTBD6Q96KE9 485 aa7.5□□□□□ -1.21
SCFD1-208ENST00000553278 MIPEPQ99797 713 aa7.5□□□□□ -1.21
SCFD1-208ENST00000553278 DSCC1Q9BVC3 393 aa7.5□□□□□ -1.21
SCFD1-208ENST00000553278 CRTAC1Q9NQ79 661 aa7.5□□□□□ -1.21
SCFD1-208ENST00000553278 ZKSCAN5Q9Y2L8 839 aa7.5□□□□□ -1.21
SCFD1-208ENST00000553278 COL17A1Q9UMD9 1497 aaPredicted RBP7.49□□□□□ -1.21
SCFD1-208ENST00000553278 M0R2C6 588 aa7.49□□□□□ -1.21
SCFD1-208ENST00000553278 CBX4O00257 560 aa7.49□□□□□ -1.21
SCFD1-208ENST00000553278 FKBP9O95302 570 aa7.49□□□□□ -1.21
SCFD1-208ENST00000553278 LDHAP00338 332 aaKnown RBP7.49□□□□□ -1.21
SCFD1-208ENST00000553278 F2P00734 622 aa7.49□□□□□ -1.21
SCFD1-208ENST00000553278 DRD2P14416 443 aa7.49□□□□□ -1.21
SCFD1-208ENST00000553278 CCND1P24385 295 aa7.49□□□□□ -1.21
SCFD1-208ENST00000553278 OCRLQ01968 901 aa7.49□□□□□ -1.21
SCFD1-208ENST00000553278 SRSF11Q05519 484 aaKnown RBP7.49□□□□□ -1.21
SCFD1-208ENST00000553278 VPS72Q15906 364 aa7.49□□□□□ -1.21
SCFD1-208ENST00000553278 PTPN21Q16825 1174 aa7.49□□□□□ -1.21
SCFD1-208ENST00000553278 SKOR2Q2VWA4 1001 aaPredicted RBP7.49□□□□□ -1.21
SCFD1-208ENST00000553278 LONRF3Q496Y0 759 aa7.49□□□□□ -1.21
SCFD1-208ENST00000553278 TRAPPC3LQ5T215 181 aa7.49□□□□□ -1.21
SCFD1-208ENST00000553278 FDX2Q6P4F2 183 aa7.49□□□□□ -1.21
SCFD1-208ENST00000553278 KIAA1211Q6ZU35 1233 aa7.49□□□□□ -1.21
SCFD1-208ENST00000553278 FKBP9P1Q75LS8 142 aa7.49□□□□□ -1.21
SCFD1-208ENST00000553278 C11orf74Q86VG3 221 aa7.49□□□□□ -1.21
SCFD1-208ENST00000553278 FBXO11Q86XK2 927 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms