RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 ZBED9Q6R2W3 1325 aa20.24■□□□□ 0.83
VPS29-204ENST00000548259 ZEB2O60315 1214 aa20.23■□□□□ 0.83
VPS29-204ENST00000548259 NDUFB10O96000 172 aa20.23■□□□□ 0.83
VPS29-204ENST00000548259 FDX1P10109 184 aa20.23■□□□□ 0.83
VPS29-204ENST00000548259 OAZ1P54368 228 aa20.23■□□□□ 0.83
VPS29-204ENST00000548259 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.23■□□□□ 0.83
VPS29-204ENST00000548259 ARMCX2Q7L311 632 aa20.23■□□□□ 0.83
VPS29-204ENST00000548259 SYNPO2Q9UMS6 1093 aa20.23■□□□□ 0.83
VPS29-204ENST00000548259 RIPK3Q9Y572 518 aa20.23■□□□□ 0.83
VPS29-204ENST00000548259 CCDC85BQ15834 202 aaPredicted RBP20.22■□□□□ 0.83
VPS29-204ENST00000548259 AAK1Q2M2I8 961 aa20.22■□□□□ 0.83
VPS29-204ENST00000548259 SBK1Q52WX2 424 aa20.22■□□□□ 0.83
VPS29-204ENST00000548259 GIMAP6Q6P9H5 292 aa20.22■□□□□ 0.83
VPS29-204ENST00000548259 HIPK3Q9H422 1215 aa20.22■□□□□ 0.83
VPS29-204ENST00000548259 CHMP4BQ9H444 224 aaKnown RBP20.22■□□□□ 0.83
VPS29-204ENST00000548259 SLC38A10Q9HBR0 1119 aa20.22■□□□□ 0.83
VPS29-204ENST00000548259 RAVER2Q9HCJ3 691 aaKnown RBP20.22■□□□□ 0.83
VPS29-204ENST00000548259 CLIP2Q9UDT6 1046 aa20.22■□□□□ 0.83
VPS29-204ENST00000548259 CYP2C18P33260 490 aa20.21■□□□□ 0.83
VPS29-204ENST00000548259 TNFAIP2Q03169 654 aa20.21■□□□□ 0.83
VPS29-204ENST00000548259 RPUSD2Q8IZ73 545 aaKnown RBP20.21■□□□□ 0.83
VPS29-204ENST00000548259 ZNF444Q8N0Y2 327 aaPredicted RBP20.21■□□□□ 0.83
VPS29-204ENST00000548259 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.21■□□□□ 0.83
VPS29-204ENST00000548259 AP5M1Q9H0R1 490 aa20.21■□□□□ 0.83
VPS29-204ENST00000548259 MUC3AQ02505 3323 aa20.21■□□□□ 0.83
VPS29-204ENST00000548259 ZNFX1Q9P2E3 1918 aaKnown RBP20.21■□□□□ 0.83
VPS29-204ENST00000548259 ASB14A6NK59 587 aa20.2■□□□□ 0.82
VPS29-204ENST00000548259 SMIM22K7EJ46 135 aa20.2■□□□□ 0.82
VPS29-204ENST00000548259 CD4P01730 458 aa20.2■□□□□ 0.82
VPS29-204ENST00000548259 RASA1P20936 1047 aa20.2■□□□□ 0.82
VPS29-204ENST00000548259 NKX3-2P78367 333 aa20.2■□□□□ 0.82
VPS29-204ENST00000548259 SLFNL1Q499Z3 407 aa20.2■□□□□ 0.82
VPS29-204ENST00000548259 CCDC144CPQ8IYA2 1237 aa20.2■□□□□ 0.82
VPS29-204ENST00000548259 NKX2-4Q9H2Z4 354 aa20.2■□□□□ 0.82
VPS29-204ENST00000548259 ISY1Q9ULR0 285 aaKnown RBP20.2■□□□□ 0.82
VPS29-204ENST00000548259 MYH8P13535 1937 aa20.19■□□□□ 0.82
VPS29-204ENST00000548259 MINDY4BA8MYZ0 360 aa20.19■□□□□ 0.82
VPS29-204ENST00000548259 PANK1Q8TE04 598 aa20.19■□□□□ 0.82
VPS29-204ENST00000548259 PUS7LQ9H0K6 701 aaKnown RBP20.19■□□□□ 0.82
VPS29-204ENST00000548259 ACAD9Q9H845 621 aa20.19■□□□□ 0.82
VPS29-204ENST00000548259 SLC4A7Q9Y6M7 1214 aa20.19■□□□□ 0.82
VPS29-204ENST00000548259 PLXNA1Q9UIW2 1896 aa20.19■□□□□ 0.82
VPS29-204ENST00000548259 TTLL1O95922 423 aa20.18■□□□□ 0.82
VPS29-204ENST00000548259 ITGA7Q13683 1181 aa20.18■□□□□ 0.82
VPS29-204ENST00000548259 ADGRE1Q14246 886 aa20.18■□□□□ 0.82
VPS29-204ENST00000548259 PPP2R2DQ66LE6 453 aa20.18■□□□□ 0.82
VPS29-204ENST00000548259 CXCL17Q6UXB2 119 aa20.18■□□□□ 0.82
VPS29-204ENST00000548259 OTOP2Q7RTS6 562 aa20.18■□□□□ 0.82
VPS29-204ENST00000548259 STK11IPQ8N1F8 1099 aa20.18■□□□□ 0.82
VPS29-204ENST00000548259 MKL1Q969V6 931 aa20.18■□□□□ 0.82
VPS29-204ENST00000548259 FAM122AQ96E09 287 aa20.18■□□□□ 0.82
VPS29-204ENST00000548259 C1QTNF1Q9BXJ1 281 aa20.18■□□□□ 0.82
VPS29-204ENST00000548259 HOMER2Q9NSB8 354 aa20.18■□□□□ 0.82
VPS29-204ENST00000548259 CXXC1Q9P0U4 656 aaPredicted RBP20.18■□□□□ 0.82
VPS29-204ENST00000548259 DDX19BQ9UMR2 479 aa20.18■□□□□ 0.82
VPS29-204ENST00000548259 COG6Q9Y2V7 657 aa20.18■□□□□ 0.82
VPS29-204ENST00000548259 COL11A1P12107 1806 aaPredicted RBP20.18■□□□□ 0.82
VPS29-204ENST00000548259 PARP14Q460N5 1801 aa20.18■□□□□ 0.82
VPS29-204ENST00000548259 ADCY6O43306 1168 aa20.17■□□□□ 0.82
VPS29-204ENST00000548259 IRX5P78411 483 aaPredicted RBP20.17■□□□□ 0.82
VPS29-204ENST00000548259 BEX3Q00994 111 aa20.17■□□□□ 0.82
VPS29-204ENST00000548259 IKQ13123 557 aaPredicted RBP20.17■□□□□ 0.82
VPS29-204ENST00000548259 FSCN1Q16658 493 aaKnown RBP20.17■□□□□ 0.82
VPS29-204ENST00000548259 TLK2Q86UE8 772 aa20.17■□□□□ 0.82
VPS29-204ENST00000548259 SLC43A3Q8NBI5 491 aa20.17■□□□□ 0.82
VPS29-204ENST00000548259 GMCL1P1Q8NEA9 526 aa20.17■□□□□ 0.82
VPS29-204ENST00000548259 CHURC1Q8WUH1 139 aa20.17■□□□□ 0.82
VPS29-204ENST00000548259 STRBPQ96SI9 672 aaKnown RBP20.17■□□□□ 0.82
VPS29-204ENST00000548259 BMP3P12645 472 aa20.16■□□□□ 0.82
VPS29-204ENST00000548259 GNAT2P19087 354 aa20.16■□□□□ 0.82
VPS29-204ENST00000548259 TDO2P48775 406 aa20.16■□□□□ 0.82
VPS29-204ENST00000548259 HNRNPUQ00839 825 aaKnown RBP eCLIP20.16■□□□□ 0.82
VPS29-204ENST00000548259 TKFCQ3LXA3 575 aa20.16■□□□□ 0.82
VPS29-204ENST00000548259 PPP4R3BQ5MIZ7 849 aa20.16■□□□□ 0.82
VPS29-204ENST00000548259 FAM160B2Q86V87 743 aa20.16■□□□□ 0.82
VPS29-204ENST00000548259 PCDHA11Q9Y5I1 949 aa20.16■□□□□ 0.82
VPS29-204ENST00000548259 ZBBXA8MT70 800 aa20.15■□□□□ 0.82
VPS29-204ENST00000548259 GTPBP6O43824 516 aaPredicted RBP20.15■□□□□ 0.82
VPS29-204ENST00000548259 PFKMP08237 780 aa20.15■□□□□ 0.82
VPS29-204ENST00000548259 PLA2G5P39877 138 aa20.15■□□□□ 0.82
VPS29-204ENST00000548259 STAT2P52630 851 aa20.15■□□□□ 0.82
VPS29-204ENST00000548259 CCL23P55773 120 aa20.15■□□□□ 0.82
VPS29-204ENST00000548259 CNTN2Q02246 1040 aa20.15■□□□□ 0.82
VPS29-204ENST00000548259 SKIV2LQ15477 1246 aaKnown RBP20.15■□□□□ 0.82
VPS29-204ENST00000548259 LRRFIP1Q32MZ4 808 aaKnown RBP20.15■□□□□ 0.82
VPS29-204ENST00000548259 SLFN13Q68D06 897 aa20.15■□□□□ 0.82
VPS29-204ENST00000548259 IQSEC1Q6DN90 963 aa20.15■□□□□ 0.82
VPS29-204ENST00000548259 MICALL1Q8N3F8 863 aa20.15■□□□□ 0.82
VPS29-204ENST00000548259 FAM133AQ8N9E0 248 aa20.15■□□□□ 0.82
VPS29-204ENST00000548259 GPATCH3Q96I76 525 aa20.15■□□□□ 0.82
VPS29-204ENST00000548259 FGD4Q96M96 766 aa20.15■□□□□ 0.82
VPS29-204ENST00000548259 MTMR4Q9NYA4 1195 aa20.15■□□□□ 0.82
VPS29-204ENST00000548259 GSG1L2A8MUP6 293 aa20.14■□□□□ 0.81
VPS29-204ENST00000548259 CTAGE5O15320 804 aa20.14■□□□□ 0.81
VPS29-204ENST00000548259 DYNC1LI2O43237 492 aaPredicted RBP20.14■□□□□ 0.81
VPS29-204ENST00000548259 APPP05067 770 aa20.14■□□□□ 0.81
VPS29-204ENST00000548259 SLC3A2P08195 630 aaKnown RBP20.14■□□□□ 0.81
VPS29-204ENST00000548259 SUPT20HL2P0C7V6 817 aa20.14■□□□□ 0.81
VPS29-204ENST00000548259 CEP95Q96GE4 821 aa20.14■□□□□ 0.81
VPS29-204ENST00000548259 NOC4LQ9BVI4 516 aaKnown RBP20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms