RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 NCOA5Q9HCD5 579 aaKnown RBP6.24□□□□□ -1.41
LIMA1-203ENST00000547825 ORC3Q9UBD5 711 aaPredicted RBP6.24□□□□□ -1.41
LIMA1-203ENST00000547825 BCS1LQ9Y276 419 aa6.24□□□□□ -1.41
LIMA1-203ENST00000547825 KAT6BQ8WYB5 2073 aa6.24□□□□□ -1.41
LIMA1-203ENST00000547825 SCN4AP35499 1836 aa6.23□□□□□ -1.41
LIMA1-203ENST00000547825 BTBD11A6QL63 1104 aa6.23□□□□□ -1.41
LIMA1-203ENST00000547825 GOLIM4O00461 696 aa6.23□□□□□ -1.41
LIMA1-203ENST00000547825 CTAGE5O15320 804 aa6.23□□□□□ -1.41
LIMA1-203ENST00000547825 ATP8B2P98198 1209 aa6.23□□□□□ -1.41
LIMA1-203ENST00000547825 GABPB1Q06547 395 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-203ENST00000547825 KRT32Q14532 448 aa6.23□□□□□ -1.41
LIMA1-203ENST00000547825 CCDC181Q5TID7 509 aa6.23□□□□□ -1.41
LIMA1-203ENST00000547825 TTC6Q86TZ1 520 aa6.23□□□□□ -1.41
LIMA1-203ENST00000547825 CDK15Q96Q40 435 aa6.23□□□□□ -1.41
LIMA1-203ENST00000547825 PHAXQ9H814 394 aaKnown RBP6.23□□□□□ -1.41
LIMA1-203ENST00000547825 COL4A5P29400 1685 aa6.23□□□□□ -1.41
LIMA1-203ENST00000547825 KLRG2A4D1S0 409 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-203ENST00000547825 GNAT3A8MTJ3 354 aa6.23□□□□□ -1.41
LIMA1-203ENST00000547825 KCNA3P22001 575 aa6.23□□□□□ -1.41
LIMA1-203ENST00000547825 GYS2P54840 703 aa6.23□□□□□ -1.41
LIMA1-203ENST00000547825 STX17P56962 302 aa6.23□□□□□ -1.41
LIMA1-203ENST00000547825 NMIQ13287 307 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-203ENST00000547825 MEI1Q5TIA1 1274 aa6.23□□□□□ -1.41
LIMA1-203ENST00000547825 CREB3L3Q68CJ9 461 aa6.23□□□□□ -1.41
LIMA1-203ENST00000547825 KIAA1328Q86T90 577 aa6.23□□□□□ -1.41
LIMA1-203ENST00000547825 ZNF526Q8TF50 670 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-203ENST00000547825 ALKBH8Q96BT7 664 aaKnown RBP6.23□□□□□ -1.41
LIMA1-203ENST00000547825 FAM227BQ96M60 508 aa6.23□□□□□ -1.41
LIMA1-203ENST00000547825 ST7Q9NRC1 585 aa6.23□□□□□ -1.41
LIMA1-203ENST00000547825 GOLGA8BA8MQT2 603 aa6.23□□□□□ -1.41
LIMA1-203ENST00000547825 IDH1O75874 414 aaKnown RBP6.23□□□□□ -1.41
LIMA1-203ENST00000547825 GNRH1P01148 92 aa6.23□□□□□ -1.41
LIMA1-203ENST00000547825 RXRAP19793 462 aa6.23□□□□□ -1.41
LIMA1-203ENST00000547825 APOBRQ0VD83 1088 aa6.23□□□□□ -1.41
LIMA1-203ENST00000547825 LRRFIP1Q32MZ4 808 aaKnown RBP6.23□□□□□ -1.41
LIMA1-203ENST00000547825 TICAM2Q86XR7 235 aa6.23□□□□□ -1.41
LIMA1-203ENST00000547825 KLHDC4Q8TBB5 520 aa6.23□□□□□ -1.41
LIMA1-203ENST00000547825 EMID1Q96A84 441 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-203ENST00000547825 CITED4Q96RK1 184 aa6.23□□□□□ -1.41
LIMA1-203ENST00000547825 MTFR1LQ9H019 292 aa6.23□□□□□ -1.41
LIMA1-203ENST00000547825 USP44Q9H0E7 712 aa6.23□□□□□ -1.41
LIMA1-203ENST00000547825 CCSER2Q9H7U1 834 aa6.23□□□□□ -1.41
LIMA1-203ENST00000547825 PTPRCP08575 1304 aa6.23□□□□□ -1.41
LIMA1-203ENST00000547825 SEC31AO94979 1220 aaKnown RBP6.22□□□□□ -1.41
LIMA1-203ENST00000547825 EIF5P55010 431 aaKnown RBP6.22□□□□□ -1.41
LIMA1-203ENST00000547825 PTH1RQ03431 593 aa6.22□□□□□ -1.41
LIMA1-203ENST00000547825 SF3A3Q12874 501 aaKnown RBP eCLIP6.22□□□□□ -1.41
LIMA1-203ENST00000547825 CTR9Q6PD62 1173 aa6.22□□□□□ -1.41
LIMA1-203ENST00000547825 TAX1BP1Q86VP1 789 aa6.22□□□□□ -1.41
LIMA1-203ENST00000547825 MICU3Q86XE3 530 aa6.22□□□□□ -1.41
LIMA1-203ENST00000547825 EVI5LQ96CN4 794 aa6.22□□□□□ -1.41
LIMA1-203ENST00000547825 EDC3Q96F86 508 aaKnown RBP6.22□□□□□ -1.41
LIMA1-203ENST00000547825 ZCCHC17Q9NP64 241 aaKnown RBP6.22□□□□□ -1.41
LIMA1-203ENST00000547825 USP42Q9H9J4 1324 aaKnown RBP6.22□□□□□ -1.41
LIMA1-203ENST00000547825 EIF1AYO14602 144 aaKnown RBP6.22□□□□□ -1.41
LIMA1-203ENST00000547825 SIAH2O43255 324 aa6.22□□□□□ -1.41
LIMA1-203ENST00000547825 GNA15P30679 374 aa6.22□□□□□ -1.41
LIMA1-203ENST00000547825 PPP2R3AQ06190 1150 aa6.22□□□□□ -1.41
LIMA1-203ENST00000547825 GOLGA8FQ08AF8 430 aa6.22□□□□□ -1.41
LIMA1-203ENST00000547825 GOLGA8DPQ0D2H9 430 aa6.22□□□□□ -1.41
LIMA1-203ENST00000547825 R3HDM1Q15032 1099 aaKnown RBP6.22□□□□□ -1.41
LIMA1-203ENST00000547825 CCDC129Q6ZRS4 1044 aa6.22□□□□□ -1.41
LIMA1-203ENST00000547825 GIMAP7Q8NHV1 300 aa6.22□□□□□ -1.41
LIMA1-203ENST00000547825 LEO1Q8WVC0 666 aaPredicted RBP6.22□□□□□ -1.41
LIMA1-203ENST00000547825 NUP88Q99567 741 aaPredicted RBP6.22□□□□□ -1.41
LIMA1-203ENST00000547825 LSG1Q9H089 658 aaKnown RBP6.22□□□□□ -1.41
LIMA1-203ENST00000547825 BCCIPQ9P287 314 aaKnown RBP eCLIP6.22□□□□□ -1.41
LIMA1-203ENST00000547825 MYO5AQ9Y4I1 1855 aaKnown RBP6.22□□□□□ -1.41
LIMA1-203ENST00000547825 BRD2P25440 801 aaKnown RBP6.22□□□□□ -1.41
LIMA1-203ENST00000547825 GTF2E1P29083 439 aaPredicted RBP6.22□□□□□ -1.41
LIMA1-203ENST00000547825 OAS2P29728 719 aaKnown RBP6.22□□□□□ -1.41
LIMA1-203ENST00000547825 NOS2P35228 1153 aa6.22□□□□□ -1.41
LIMA1-203ENST00000547825 SYKP43405 635 aa6.22□□□□□ -1.41
LIMA1-203ENST00000547825 AFMP43652 599 aa6.22□□□□□ -1.41
LIMA1-203ENST00000547825 ZSCAN26Q16670 478 aa6.22□□□□□ -1.41
LIMA1-203ENST00000547825 ME3Q16798 604 aa6.22□□□□□ -1.41
LIMA1-203ENST00000547825 CWF19L2Q2TBE0 894 aaKnown RBP6.22□□□□□ -1.41
LIMA1-203ENST00000547825 UTP14CQ5TAP6 766 aaKnown RBP6.22□□□□□ -1.41
LIMA1-203ENST00000547825 MYO19Q96H55 970 aa6.22□□□□□ -1.41
LIMA1-203ENST00000547825 CAPZA3Q96KX2 299 aa6.22□□□□□ -1.41
LIMA1-203ENST00000547825 AGBL1Q96MI9 1066 aa6.22□□□□□ -1.41
LIMA1-203ENST00000547825 PIF1Q9H611 641 aa6.22□□□□□ -1.41
LIMA1-203ENST00000547825 ZNHIT6Q9NWK9 470 aaKnown RBP6.22□□□□□ -1.41
LIMA1-203ENST00000547825 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.22□□□□□ -1.41
LIMA1-203ENST00000547825 MAP3K2Q9Y2U5 619 aa6.22□□□□□ -1.41
LIMA1-203ENST00000547825 HRH3Q9Y5N1 445 aa6.22□□□□□ -1.41
LIMA1-203ENST00000547825 KCNQ3O43525 872 aa6.21□□□□□ -1.41
LIMA1-203ENST00000547825 RPS6KA4O75676 772 aa6.21□□□□□ -1.41
LIMA1-203ENST00000547825 NCBP1Q09161 790 aaKnown RBP6.21□□□□□ -1.41
LIMA1-203ENST00000547825 SPECC1Q5M775 1068 aa6.21□□□□□ -1.41
LIMA1-203ENST00000547825 ALKBH2Q6NS38 261 aa6.21□□□□□ -1.41
LIMA1-203ENST00000547825 ZNF790Q6PG37 636 aa6.21□□□□□ -1.41
LIMA1-203ENST00000547825 CCDC150Q8NCX0 1101 aa6.21□□□□□ -1.41
LIMA1-203ENST00000547825 MRPS27Q92552 414 aaKnown RBP6.21□□□□□ -1.41
LIMA1-203ENST00000547825 TGIF2Q9GZN2 237 aa6.21□□□□□ -1.41
LIMA1-203ENST00000547825 CHPF2Q9P2E5 772 aa6.21□□□□□ -1.41
LIMA1-203ENST00000547825 SHTN1A0MZ66 631 aa6.21□□□□□ -1.42
LIMA1-203ENST00000547825 ZEB2O60315 1214 aa6.21□□□□□ -1.42
LIMA1-203ENST00000547825 HMGB1P09429 215 aaKnown RBP6.21□□□□□ -1.42
LIMA1-203ENST00000547825 NBPF7P0C2Y1 421 aaPredicted RBP6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 124.5 ms