RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 TBC1D8O95759 1140 aa13.44□□□□□ -0.26
YBX3-213ENST00000542641 IFNAR1P17181 557 aa13.44□□□□□ -0.26
YBX3-213ENST00000542641 FUT2Q10981 343 aa13.44□□□□□ -0.26
YBX3-213ENST00000542641 NTRK3Q16288 839 aa13.44□□□□□ -0.26
YBX3-213ENST00000542641 SLC35G1Q2M3R5 365 aa13.44□□□□□ -0.26
YBX3-213ENST00000542641 CCDC174Q6PII3 467 aa13.44□□□□□ -0.26
YBX3-213ENST00000542641 HOMER1Q86YM7 354 aa13.44□□□□□ -0.26
YBX3-213ENST00000542641 CCDC83Q8IWF9 413 aa13.44□□□□□ -0.26
YBX3-213ENST00000542641 HSCBQ8IWL3 235 aa13.44□□□□□ -0.26
YBX3-213ENST00000542641 PHKBQ93100 1093 aa13.44□□□□□ -0.26
YBX3-213ENST00000542641 RRP36Q96EU6 259 aaKnown RBP13.44□□□□□ -0.26
YBX3-213ENST00000542641 PIGSQ96S52 555 aa13.44□□□□□ -0.26
YBX3-213ENST00000542641 RANBP17Q9H2T7 1088 aaKnown RBP13.44□□□□□ -0.26
YBX3-213ENST00000542641 RBPJLQ9UBG7 517 aa13.44□□□□□ -0.26
YBX3-213ENST00000542641 SEC63Q9UGP8 760 aaKnown RBP13.44□□□□□ -0.26
YBX3-213ENST00000542641 CPA4Q9UI42 421 aa13.44□□□□□ -0.26
YBX3-213ENST00000542641 RABGAP1Q9Y3P9 1069 aa13.44□□□□□ -0.26
YBX3-213ENST00000542641 V9GY48 417 aaPredicted RBP13.44□□□□□ -0.26
YBX3-213ENST00000542641 CEP350Q5VT06 3117 aa13.44□□□□□ -0.26
YBX3-213ENST00000542641 PNMA6FA0A0J9YX94 578 aa13.43□□□□□ -0.26
YBX3-213ENST00000542641 hCG_1642624A0A1W2PR95 340 aa13.43□□□□□ -0.26
YBX3-213ENST00000542641 K7ELQ4 463 aaPredicted RBP13.43□□□□□ -0.26
YBX3-213ENST00000542641 ZBTB5O15062 677 aa13.43□□□□□ -0.26
YBX3-213ENST00000542641 PEX10O60683 326 aa13.43□□□□□ -0.26
YBX3-213ENST00000542641 AKAP17AQ02040 695 aaKnown RBP13.43□□□□□ -0.26
YBX3-213ENST00000542641 SSRP1Q08945 709 aaKnown RBP13.43□□□□□ -0.26
YBX3-213ENST00000542641 PLS1Q14651 629 aa13.43□□□□□ -0.26
YBX3-213ENST00000542641 TMEM132BQ14DG7 1078 aa13.43□□□□□ -0.26
YBX3-213ENST00000542641 CDC37Q16543 378 aaPredicted RBP13.43□□□□□ -0.26
YBX3-213ENST00000542641 QRICH1Q2TAL8 776 aa13.43□□□□□ -0.26
YBX3-213ENST00000542641 POTEEQ6S8J3 1075 aa13.43□□□□□ -0.26
YBX3-213ENST00000542641 CPXCR1Q8N123 301 aa13.43□□□□□ -0.26
YBX3-213ENST00000542641 ANKRD13CQ8N6S4 541 aa13.43□□□□□ -0.26
YBX3-213ENST00000542641 GPRC5AQ8NFJ5 357 aa13.43□□□□□ -0.26
YBX3-213ENST00000542641 SPOCK2Q92563 424 aa13.43□□□□□ -0.26
YBX3-213ENST00000542641 MTMR8Q96EF0 704 aa13.43□□□□□ -0.26
YBX3-213ENST00000542641 SLC26A6Q9BXS9 759 aa13.43□□□□□ -0.26
YBX3-213ENST00000542641 RAVER2Q9HCJ3 691 aaKnown RBP13.43□□□□□ -0.26
YBX3-213ENST00000542641 TXNRD2Q9NNW7 524 aa13.43□□□□□ -0.26
YBX3-213ENST00000542641 BTBD7Q9P203 1132 aa13.43□□□□□ -0.26
YBX3-213ENST00000542641 CNTNAP5Q8WYK1 1306 aa13.42□□□□□ -0.26
YBX3-213ENST00000542641 PRPF3O43395 683 aaKnown RBP13.42□□□□□ -0.26
YBX3-213ENST00000542641 CNMDO75829 334 aa13.42□□□□□ -0.26
YBX3-213ENST00000542641 CTDNEP1O95476 244 aa13.42□□□□□ -0.26
YBX3-213ENST00000542641 ICAM1P05362 532 aa13.42□□□□□ -0.26
YBX3-213ENST00000542641 SLC4A3P48751 1232 aa13.42□□□□□ -0.26
YBX3-213ENST00000542641 OAZ1P54368 228 aa13.42□□□□□ -0.26
YBX3-213ENST00000542641 ST3GAL1Q11201 340 aa13.42□□□□□ -0.26
YBX3-213ENST00000542641 C17orf99Q6UX52 265 aa13.42□□□□□ -0.26
YBX3-213ENST00000542641 TRIM22Q8IYM9 498 aa13.42□□□□□ -0.26
YBX3-213ENST00000542641 REPS2Q8NFH8 660 aa13.42□□□□□ -0.26
YBX3-213ENST00000542641 LLPHQ9BRT6 129 aaKnown RBP13.42□□□□□ -0.26
YBX3-213ENST00000542641 CFHR5Q9BXR6 569 aa13.42□□□□□ -0.26
YBX3-213ENST00000542641 RNF26Q9BY78 433 aaPredicted RBP13.42□□□□□ -0.26
YBX3-213ENST00000542641 SPATC1LQ9H0A9 340 aa13.42□□□□□ -0.26
YBX3-213ENST00000542641 R3HDMLQ9H3Y0 253 aa13.42□□□□□ -0.26
YBX3-213ENST00000542641 SAGE1Q9NXZ1 904 aa13.42□□□□□ -0.26
YBX3-213ENST00000542641 THSD7BQ9C0I4 1608 aa13.42□□□□□ -0.26
YBX3-213ENST00000542641 ZNF536O15090 1300 aa13.41□□□□□ -0.26
YBX3-213ENST00000542641 ADGRA2Q96PE1 1338 aa13.41□□□□□ -0.26
YBX3-213ENST00000542641 ATP2A1O14983 1001 aa13.41□□□□□ -0.26
YBX3-213ENST00000542641 DTNBO60941 627 aa13.41□□□□□ -0.26
YBX3-213ENST00000542641 FMNL1O95466 1100 aaPredicted RBP13.41□□□□□ -0.26
YBX3-213ENST00000542641 BCRP11274 1271 aa13.41□□□□□ -0.26
YBX3-213ENST00000542641 STAT3P40763 770 aa13.41□□□□□ -0.26
YBX3-213ENST00000542641 ERVK-9P63128 1117 aa13.41□□□□□ -0.26
YBX3-213ENST00000542641 ERVK-24P63145 666 aa13.41□□□□□ -0.26
YBX3-213ENST00000542641 FAM110CQ1W6H9 321 aa13.41□□□□□ -0.26
YBX3-213ENST00000542641 Q3C1V9 767 aa13.41□□□□□ -0.26
YBX3-213ENST00000542641 FBXO11Q86XK2 927 aa13.41□□□□□ -0.26
YBX3-213ENST00000542641 NSUN7Q8NE18 718 aaKnown RBP13.41□□□□□ -0.26
YBX3-213ENST00000542641 AGBL1Q96MI9 1066 aa13.41□□□□□ -0.26
YBX3-213ENST00000542641 AMNQ9BXJ7 453 aa13.41□□□□□ -0.26
YBX3-213ENST00000542641 TEX13BQ9BXU2 312 aa13.41□□□□□ -0.26
YBX3-213ENST00000542641 WBP1LQ9NX94 342 aa13.41□□□□□ -0.26
YBX3-213ENST00000542641 RBM27Q9P2N5 1060 aaKnown RBP13.41□□□□□ -0.26
YBX3-213ENST00000542641 MORF4L1Q9UBU8 362 aa13.41□□□□□ -0.26
YBX3-213ENST00000542641 PNMA2Q9UL42 364 aa13.41□□□□□ -0.26
YBX3-213ENST00000542641 ZNF214Q9UL59 606 aaPredicted RBP13.41□□□□□ -0.26
YBX3-213ENST00000542641 CCPG1Q9ULG6 757 aa13.41□□□□□ -0.26
YBX3-213ENST00000542641 PCNTO95613 3336 aa13.41□□□□□ -0.26
YBX3-213ENST00000542641 PTPDC1A2A3K4 754 aa13.4□□□□□ -0.26
YBX3-213ENST00000542641 JAK2O60674 1132 aa13.4□□□□□ -0.26
YBX3-213ENST00000542641 CCNA1P78396 465 aa13.4□□□□□ -0.26
YBX3-213ENST00000542641 TRAF1Q13077 416 aa13.4□□□□□ -0.26
YBX3-213ENST00000542641 BECN1Q14457 450 aa13.4□□□□□ -0.26
YBX3-213ENST00000542641 USH1GQ495M9 461 aa13.4□□□□□ -0.26
YBX3-213ENST00000542641 SNRNP48Q6IEG0 339 aaKnown RBP13.4□□□□□ -0.26
YBX3-213ENST00000542641 RIOX2Q8IUF8 465 aa13.4□□□□□ -0.26
YBX3-213ENST00000542641 CCAR1Q8IX12 1150 aaKnown RBP13.4□□□□□ -0.26
YBX3-213ENST00000542641 JMYQ8N9B5 988 aa13.4□□□□□ -0.26
YBX3-213ENST00000542641 DDX11Q96FC9 970 aa13.4□□□□□ -0.26
YBX3-213ENST00000542641 MOV10L1Q9BXT6 1211 aaKnown RBP13.4□□□□□ -0.26
YBX3-213ENST00000542641 TSHZ2Q9NRE2 1034 aa13.4□□□□□ -0.26
YBX3-213ENST00000542641 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.4□□□□□ -0.26
YBX3-213ENST00000542641 PCDHA1Q9Y5I3 950 aa13.4□□□□□ -0.26
YBX3-213ENST00000542641 RLFQ13129 1914 aa13.39□□□□□ -0.27
YBX3-213ENST00000542641 PPP1R11O60927 126 aaPredicted RBP13.39□□□□□ -0.27
YBX3-213ENST00000542641 DEXIO95424 95 aa13.39□□□□□ -0.27
YBX3-213ENST00000542641 ALAS1P13196 640 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms