RNA–Protein interactions for RNA: ENST00000533946.5

SSBP3-215, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 431 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-215ENST00000533946 TINF2Q9BSI4 451 aa11.39□□□□□ -0.59
SSBP3-215ENST00000533946 TEX13BQ9BXU2 312 aa11.39□□□□□ -0.59
SSBP3-215ENST00000533946 SENP6Q9GZR1 1112 aaPredicted RBP11.39□□□□□ -0.59
SSBP3-215ENST00000533946 UBA5Q9GZZ9 404 aa11.39□□□□□ -0.59
SSBP3-215ENST00000533946 GPHNQ9NQX3 736 aaPredicted RBP11.39□□□□□ -0.59
SSBP3-215ENST00000533946 ZSWIM5Q9P217 1185 aa11.39□□□□□ -0.59
SSBP3-215ENST00000533946 FEM1BQ9UK73 627 aa11.39□□□□□ -0.59
SSBP3-215ENST00000533946 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.38□□□□□ -0.59
SSBP3-215ENST00000533946 EVI5O60447 810 aa11.38□□□□□ -0.59
SSBP3-215ENST00000533946 ZBED4O75132 1171 aa11.38□□□□□ -0.59
SSBP3-215ENST00000533946 SLC3A2P08195 630 aaKnown RBP11.38□□□□□ -0.59
SSBP3-215ENST00000533946 PDHBP11177 359 aa11.38□□□□□ -0.59
SSBP3-215ENST00000533946 ALAS1P13196 640 aa11.38□□□□□ -0.59
SSBP3-215ENST00000533946 CCDC96Q2M329 555 aa11.38□□□□□ -0.59
SSBP3-215ENST00000533946 MFSD6Q6ZSS7 791 aa11.38□□□□□ -0.59
SSBP3-215ENST00000533946 CHST3Q7LGC8 479 aa11.38□□□□□ -0.59
SSBP3-215ENST00000533946 ABRAQ8N0Z2 381 aa11.38□□□□□ -0.59
SSBP3-215ENST00000533946 KATNBL1Q9H079 304 aa11.38□□□□□ -0.59
SSBP3-215ENST00000533946 A1CFQ9NQ94 594 aaKnown RBP11.38□□□□□ -0.59
SSBP3-215ENST00000533946 BAZ2BQ9UIF8 2168 aaKnown RBP11.38□□□□□ -0.59
SSBP3-215ENST00000533946 ZMYM6O95789 1325 aa11.37□□□□□ -0.59
SSBP3-215ENST00000533946 NFIBO00712 420 aa11.37□□□□□ -0.59
SSBP3-215ENST00000533946 ZNF213O14771 459 aa11.37□□□□□ -0.59
SSBP3-215ENST00000533946 ATP2A1O14983 1001 aa11.37□□□□□ -0.59
SSBP3-215ENST00000533946 SEPT4O43236 478 aa11.37□□□□□ -0.59
SSBP3-215ENST00000533946 ADCYAP1R1P41586 468 aa11.37□□□□□ -0.59
SSBP3-215ENST00000533946 STAT2P52630 851 aa11.37□□□□□ -0.59
SSBP3-215ENST00000533946 IKQ13123 557 aaPredicted RBP11.37□□□□□ -0.59
SSBP3-215ENST00000533946 KCTD2Q14681 263 aa11.37□□□□□ -0.59
SSBP3-215ENST00000533946 LRRC41Q15345 812 aa11.37□□□□□ -0.59
SSBP3-215ENST00000533946 SH3RF1Q7Z6J0 888 aa11.37□□□□□ -0.59
SSBP3-215ENST00000533946 TRMT44Q8IYL2 757 aaKnown RBP11.37□□□□□ -0.59
SSBP3-215ENST00000533946 ENAHQ8N8S7 591 aaPredicted RBP11.37□□□□□ -0.59
SSBP3-215ENST00000533946 ANKLE1Q8NAG6 615 aa11.37□□□□□ -0.59
SSBP3-215ENST00000533946 PPP1R13LQ8WUF5 828 aa11.37□□□□□ -0.59
SSBP3-215ENST00000533946 TRERF1Q96PN7 1200 aa11.37□□□□□ -0.59
SSBP3-215ENST00000533946 ZNF287Q9HBT7 754 aa11.37□□□□□ -0.59
SSBP3-215ENST00000533946 PDGFCQ9NRA1 345 aa11.37□□□□□ -0.59
SSBP3-215ENST00000533946 RNF146Q9NTX7 359 aa11.37□□□□□ -0.59
SSBP3-215ENST00000533946 TCP11L1Q9NUJ3 509 aa11.37□□□□□ -0.59
SSBP3-215ENST00000533946 LRRC37A2A6NM11 1700 aa11.37□□□□□ -0.59
SSBP3-215ENST00000533946 CDH23Q9H251 3354 aa11.36□□□□□ -0.59
SSBP3-215ENST00000533946 CTAGE5O15320 804 aa11.36□□□□□ -0.59
SSBP3-215ENST00000533946 CYP21A2P08686 494 aa11.36□□□□□ -0.59
SSBP3-215ENST00000533946 SNHG28P0DPA3 235 aa11.36□□□□□ -0.59
SSBP3-215ENST00000533946 TOP1P11387 765 aaKnown RBP11.36□□□□□ -0.59
SSBP3-215ENST00000533946 ITGB8P26012 769 aa11.36□□□□□ -0.59
SSBP3-215ENST00000533946 ZNF543Q08ER8 600 aa11.36□□□□□ -0.59
SSBP3-215ENST00000533946 SYDE2Q5VT97 1194 aa11.36□□□□□ -0.59
SSBP3-215ENST00000533946 CCDC144CPQ8IYA2 1237 aa11.36□□□□□ -0.59
SSBP3-215ENST00000533946 ANKRD35Q8N283 1001 aa11.36□□□□□ -0.59
SSBP3-215ENST00000533946 STAG2Q8N3U4 1231 aa11.36□□□□□ -0.59
SSBP3-215ENST00000533946 FAM133AQ8N9E0 248 aa11.36□□□□□ -0.59
SSBP3-215ENST00000533946 CLEC4DQ8WXI8 215 aa11.36□□□□□ -0.59
SSBP3-215ENST00000533946 LRCH3Q96II8 777 aa11.36□□□□□ -0.59
SSBP3-215ENST00000533946 HTATIP2Q9BUP3 242 aa11.36□□□□□ -0.59
SSBP3-215ENST00000533946 DSCC1Q9BVC3 393 aa11.36□□□□□ -0.59
SSBP3-215ENST00000533946 RANBP17Q9H2T7 1088 aaKnown RBP11.36□□□□□ -0.59
SSBP3-215ENST00000533946 ADAMTS4O75173 837 aa11.35□□□□□ -0.59
SSBP3-215ENST00000533946 MAGEA10P43363 369 aaPredicted RBP11.35□□□□□ -0.59
SSBP3-215ENST00000533946 ANTXR2P58335 489 aa11.35□□□□□ -0.59
SSBP3-215ENST00000533946 MDM2Q00987 491 aaPredicted RBP11.35□□□□□ -0.59
SSBP3-215ENST00000533946 SEC23AQ15436 765 aa11.35□□□□□ -0.59
SSBP3-215ENST00000533946 BTNL9Q6UXG8 535 aa11.35□□□□□ -0.59
SSBP3-215ENST00000533946 SLC30A10Q6XR72 485 aa11.35□□□□□ -0.59
SSBP3-215ENST00000533946 ARMCX2Q7L311 632 aa11.35□□□□□ -0.59
SSBP3-215ENST00000533946 EEPD1Q7L9B9 569 aa11.35□□□□□ -0.59
SSBP3-215ENST00000533946 DCAF4Q8WV16 495 aa11.35□□□□□ -0.59
SSBP3-215ENST00000533946 DDX11Q96FC9 970 aa11.35□□□□□ -0.59
SSBP3-215ENST00000533946 GDF15Q99988 308 aa11.35□□□□□ -0.59
SSBP3-215ENST00000533946 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.35□□□□□ -0.59
SSBP3-215ENST00000533946 ZHX1Q9UKY1 873 aaPredicted RBP11.35□□□□□ -0.59
SSBP3-215ENST00000533946 A0A0C4DFX4 3053 aa11.35□□□□□ -0.59
SSBP3-215ENST00000533946 SGSM2O43147 1006 aa11.34□□□□□ -0.59
SSBP3-215ENST00000533946 PLA2G6O60733 806 aa11.34□□□□□ -0.59
SSBP3-215ENST00000533946 PPP1R11O60927 126 aaPredicted RBP11.34□□□□□ -0.59
SSBP3-215ENST00000533946 RTP1P59025 263 aa11.34□□□□□ -0.59
SSBP3-215ENST00000533946 BEX3Q00994 111 aa11.34□□□□□ -0.59
SSBP3-215ENST00000533946 BAATQ14032 418 aaPredicted RBP11.34□□□□□ -0.59
SSBP3-215ENST00000533946 CCDC144BQ3MJ40 725 aa11.34□□□□□ -0.59
SSBP3-215ENST00000533946 TRIM60Q495X7 471 aa11.34□□□□□ -0.59
SSBP3-215ENST00000533946 MAMDC4Q6UXC1 1216 aa11.34□□□□□ -0.59
SSBP3-215ENST00000533946 NSMFQ6X4W1 530 aa11.34□□□□□ -0.59
SSBP3-215ENST00000533946 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.34□□□□□ -0.593e-6■■■■□ 23.5
SSBP3-215ENST00000533946 FAM160B2Q86V87 743 aa11.34□□□□□ -0.59
SSBP3-215ENST00000533946 CHURC1Q8WUH1 139 aa11.34□□□□□ -0.59
SSBP3-215ENST00000533946 ZSCAN10Q96SZ4 725 aaPredicted RBP11.34□□□□□ -0.59
SSBP3-215ENST00000533946 VAT1LQ9HCJ6 419 aa11.34□□□□□ -0.59
SSBP3-215ENST00000533946 CYP39A1Q9NYL5 469 aa11.34□□□□□ -0.59
SSBP3-215ENST00000533946 COL20A1Q9P218 1284 aa11.34□□□□□ -0.59
SSBP3-215ENST00000533946 CCPG1Q9ULG6 757 aa11.34□□□□□ -0.59
SSBP3-215ENST00000533946 SYNPO2Q9UMS6 1093 aa11.34□□□□□ -0.59
SSBP3-215ENST00000533946 DIS3Q9Y2L1 958 aaKnown RBP11.34□□□□□ -0.59
SSBP3-215ENST00000533946 LTBP2Q14767 1821 aa11.34□□□□□ -0.59
SSBP3-215ENST00000533946 PRUNE2Q8WUY3 3088 aa11.34□□□□□ -0.59
SSBP3-215ENST00000533946 TNKSO95271 1327 aa11.34□□□□□ -0.59
SSBP3-215ENST00000533946 SYNRGQ9UMZ2 1314 aa11.34□□□□□ -0.59
SSBP3-215ENST00000533946 TRIM43BA6NCK2 446 aa11.33□□□□□ -0.6
SSBP3-215ENST00000533946 DNM1LO00429 736 aa11.33□□□□□ -0.6
SSBP3-215ENST00000533946 ACVR2BQ13705 512 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 93.2 ms