RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 ABCB11O95342 1321 aa9.35□□□□□ -0.91
CSMD1-213ENST00000523488 GRID2IPA4D2P6 1211 aa9.35□□□□□ -0.91
CSMD1-213ENST00000523488 MARCKSP29966 332 aaPredicted RBP9.35□□□□□ -0.91
CSMD1-213ENST00000523488 TNNI3KQ59H18 835 aa9.35□□□□□ -0.91
CSMD1-213ENST00000523488 BZW1Q7L1Q6 419 aaKnown RBP9.35□□□□□ -0.91
CSMD1-213ENST00000523488 RETREG2Q8NC44 543 aa9.35□□□□□ -0.91
CSMD1-213ENST00000523488 CDC5LQ99459 802 aaKnown RBP9.35□□□□□ -0.91
CSMD1-213ENST00000523488 TSKSQ9UJT2 592 aa9.35□□□□□ -0.91
CSMD1-213ENST00000523488 C15orf41Q9Y2V0 281 aa9.35□□□□□ -0.91
CSMD1-213ENST00000523488 FPGT-TNNI3KV9GXZ4 949 aa9.35□□□□□ -0.91
CSMD1-213ENST00000523488 PNPLA7Q6ZV29 1317 aa9.35□□□□□ -0.91
CSMD1-213ENST00000523488 E7ENQ6 273 aa9.34□□□□□ -0.91
CSMD1-213ENST00000523488 SNUPNO95149 360 aaKnown RBP9.34□□□□□ -0.91
CSMD1-213ENST00000523488 NPTXRO95502 500 aa9.34□□□□□ -0.91
CSMD1-213ENST00000523488 HSPD1P10809 573 aaKnown RBP9.34□□□□□ -0.91
CSMD1-213ENST00000523488 PTPN12Q05209 780 aaKnown RBP9.34□□□□□ -0.91
CSMD1-213ENST00000523488 RBBP5Q15291 538 aaKnown RBP9.34□□□□□ -0.91
CSMD1-213ENST00000523488 ZNF568Q3ZCX4 644 aa9.34□□□□□ -0.91
CSMD1-213ENST00000523488 SPDYAQ5MJ70 313 aa9.34□□□□□ -0.91
CSMD1-213ENST00000523488 NCAPH2Q6IBW4 605 aa9.34□□□□□ -0.91
CSMD1-213ENST00000523488 ASRGL1Q7L266 308 aa9.34□□□□□ -0.91
CSMD1-213ENST00000523488 ARL8AQ96BM9 186 aa9.34□□□□□ -0.91
CSMD1-213ENST00000523488 CAPZA3Q96KX2 299 aa9.34□□□□□ -0.91
CSMD1-213ENST00000523488 ZNF317Q96PQ6 595 aaPredicted RBP9.34□□□□□ -0.91
CSMD1-213ENST00000523488 CCT8L2Q96SF2 557 aa9.34□□□□□ -0.91
CSMD1-213ENST00000523488 FOXP1Q9H334 677 aaPredicted RBP9.34□□□□□ -0.91
CSMD1-213ENST00000523488 KCNH3Q9ULD8 1083 aa9.34□□□□□ -0.91
CSMD1-213ENST00000523488 ASAP2O43150 1006 aa9.34□□□□□ -0.91
CSMD1-213ENST00000523488 RTN3O95197 1032 aaPredicted RBP9.34□□□□□ -0.91
CSMD1-213ENST00000523488 TFRCP02786 760 aaKnown RBP9.34□□□□□ -0.91
CSMD1-213ENST00000523488 IGKV5-2P06315 115 aa9.34□□□□□ -0.91
CSMD1-213ENST00000523488 HOXA7P31268 230 aaPredicted RBP9.34□□□□□ -0.91
CSMD1-213ENST00000523488 CCDC102BQ68D86 513 aa9.34□□□□□ -0.91
CSMD1-213ENST00000523488 KIRREL3Q8IZU9 778 aa9.34□□□□□ -0.91
CSMD1-213ENST00000523488 TNFRSF25Q93038 417 aa9.34□□□□□ -0.91
CSMD1-213ENST00000523488 CYFIP2Q96F07 1278 aa9.34□□□□□ -0.91
CSMD1-213ENST00000523488 C8orf76Q96K31 380 aa9.34□□□□□ -0.91
CSMD1-213ENST00000523488 RNPC3Q96LT9 517 aaKnown RBP9.34□□□□□ -0.91
CSMD1-213ENST00000523488 NENFQ9UMX5 172 aa9.34□□□□□ -0.91
CSMD1-213ENST00000523488 ZNF330Q9Y3S2 320 aaPredicted RBP9.34□□□□□ -0.91
CSMD1-213ENST00000523488 AFF2P51816 1311 aa9.34□□□□□ -0.91
CSMD1-213ENST00000523488 MROH7Q68CQ1 1323 aa9.34□□□□□ -0.91
CSMD1-213ENST00000523488 MYH4Q9Y623 1939 aa9.34□□□□□ -0.91
CSMD1-213ENST00000523488 MAST3O60307 1309 aa9.34□□□□□ -0.91
CSMD1-213ENST00000523488 GRM8O00222 908 aa9.34□□□□□ -0.91
CSMD1-213ENST00000523488 CPLX1O14810 134 aa9.34□□□□□ -0.91
CSMD1-213ENST00000523488 SND1Q7KZF4 910 aaKnown RBP eCLIP9.34□□□□□ -0.91
CSMD1-213ENST00000523488 ZNF570Q96NI8 536 aa9.34□□□□□ -0.91
CSMD1-213ENST00000523488 CCDC8Q9H0W5 538 aaPredicted RBP9.34□□□□□ -0.91
CSMD1-213ENST00000523488 PCDHGC5Q9Y5F6 944 aa9.34□□□□□ -0.91
CSMD1-213ENST00000523488 C10orf71Q711Q0 1435 aa9.33□□□□□ -0.92
CSMD1-213ENST00000523488 CFAP73A6NFT4 308 aa9.33□□□□□ -0.92
CSMD1-213ENST00000523488 LINGO3P0C6S8 592 aa9.33□□□□□ -0.92
CSMD1-213ENST00000523488 CASP14P31944 242 aa9.33□□□□□ -0.92
CSMD1-213ENST00000523488 SCTRP47872 440 aa9.33□□□□□ -0.92
CSMD1-213ENST00000523488 ATP1A2P50993 1020 aa9.33□□□□□ -0.92
CSMD1-213ENST00000523488 IFT88Q13099 833 aa9.33□□□□□ -0.92
CSMD1-213ENST00000523488 PDCLQ13371 301 aa9.33□□□□□ -0.92
CSMD1-213ENST00000523488 CDC37Q16543 378 aaPredicted RBP9.33□□□□□ -0.92
CSMD1-213ENST00000523488 CWF19L1Q69YN2 538 aaKnown RBP9.33□□□□□ -0.92
CSMD1-213ENST00000523488 OTUD7BQ6GQQ9 843 aa9.33□□□□□ -0.92
CSMD1-213ENST00000523488 RBM12BQ8IXT5 1001 aaKnown RBP9.33□□□□□ -0.92
CSMD1-213ENST00000523488 CCDC47Q96A33 483 aaKnown RBP9.33□□□□□ -0.92
CSMD1-213ENST00000523488 ATP6V1G3Q96LB4 118 aa9.33□□□□□ -0.92
CSMD1-213ENST00000523488 ZIM3Q96PE6 472 aa9.33□□□□□ -0.92
CSMD1-213ENST00000523488 PLCD4Q9BRC7 762 aa9.33□□□□□ -0.92
CSMD1-213ENST00000523488 NUP58Q9BVL2 599 aa9.33□□□□□ -0.92
CSMD1-213ENST00000523488 SAMSN1Q9NSI8 373 aaKnown RBP9.33□□□□□ -0.92
CSMD1-213ENST00000523488 LRRC42Q9Y546 428 aa9.33□□□□□ -0.92
CSMD1-213ENST00000523488 RPS6KL1Q9Y6S9 549 aa9.33□□□□□ -0.92
CSMD1-213ENST00000523488 SETD1BQ9UPS6 1966 aaKnown RBP9.33□□□□□ -0.92
CSMD1-213ENST00000523488 ROBO1Q9Y6N7 1651 aa9.33□□□□□ -0.92
CSMD1-213ENST00000523488 ACEP12821 1306 aa9.33□□□□□ -0.92
CSMD1-213ENST00000523488 PLSCR1O15162 318 aa9.33□□□□□ -0.92
CSMD1-213ENST00000523488 HSF2BPO75031 334 aa9.33□□□□□ -0.92
CSMD1-213ENST00000523488 ATP2C2O75185 946 aa9.33□□□□□ -0.92
CSMD1-213ENST00000523488 VIMP08670 466 aaKnown RBP9.33□□□□□ -0.92
CSMD1-213ENST00000523488 GNAZP19086 355 aa9.33□□□□□ -0.92
CSMD1-213ENST00000523488 DRD4P21917 467 aa9.33□□□□□ -0.92
CSMD1-213ENST00000523488 IQCEQ6IPM2 695 aa9.33□□□□□ -0.92
CSMD1-213ENST00000523488 TEX9Q8N6V9 391 aa9.33□□□□□ -0.92
CSMD1-213ENST00000523488 NCOA5Q9HCD5 579 aaKnown RBP9.33□□□□□ -0.92
CSMD1-213ENST00000523488 C9orf78Q9NZ63 289 aaPredicted RBP9.33□□□□□ -0.92
CSMD1-213ENST00000523488 GUCA1BQ9UMX6 200 aa9.33□□□□□ -0.92
CSMD1-213ENST00000523488 CACNA1SQ13698 1873 aa9.33□□□□□ -0.92
CSMD1-213ENST00000523488 F8W031 263 aaPredicted RBP9.33□□□□□ -0.92
CSMD1-213ENST00000523488 EIF2S2P20042 333 aaKnown RBP9.33□□□□□ -0.92
CSMD1-213ENST00000523488 TEFQ10587 303 aa9.33□□□□□ -0.92
CSMD1-213ENST00000523488 TSR1Q2NL82 804 aaKnown RBP9.33□□□□□ -0.92
CSMD1-213ENST00000523488 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.33□□□□□ -0.92
CSMD1-213ENST00000523488 ATP8A2Q9NTI2 1148 aa9.33□□□□□ -0.92
CSMD1-213ENST00000523488 IRAK4Q9NWZ3 460 aa9.33□□□□□ -0.92
CSMD1-213ENST00000523488 ANKIB1Q9P2G1 1089 aa9.33□□□□□ -0.92
CSMD1-213ENST00000523488 EME2A4GXA9 379 aaPredicted RBP9.32□□□□□ -0.92
CSMD1-213ENST00000523488 SKAP2O75563 359 aaPredicted RBP9.32□□□□□ -0.92
CSMD1-213ENST00000523488 CIAO1O76071 339 aa9.32□□□□□ -0.92
CSMD1-213ENST00000523488 MAGEA8P43361 318 aa9.32□□□□□ -0.92
CSMD1-213ENST00000523488 BIRC3Q13489 604 aa9.32□□□□□ -0.92
CSMD1-213ENST00000523488 KRI1Q8N9T8 703 aaKnown RBP9.32□□□□□ -0.92
CSMD1-213ENST00000523488 ACRBPQ8NEB7 543 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms