RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 RBPJLQ9UBG7 517 aa17.36■□□□□ 0.37
NUP54-213ENST00000513352 SEC63Q9UGP8 760 aaKnown RBP17.36■□□□□ 0.37
NUP54-213ENST00000513352 NID2Q14112 1375 aa17.36■□□□□ 0.37
NUP54-213ENST00000513352 hCG_1642624A0A1W2PR95 340 aa17.35■□□□□ 0.37
NUP54-213ENST00000513352 PPFIA3O75145 1194 aa17.35■□□□□ 0.37
NUP54-213ENST00000513352 CNMDO75829 334 aa17.35■□□□□ 0.37
NUP54-213ENST00000513352 MCM2P49736 904 aa17.35■□□□□ 0.37
NUP54-213ENST00000513352 CCNA1P78396 465 aa17.35■□□□□ 0.37
NUP54-213ENST00000513352 SCRN1Q12765 414 aa17.35■□□□□ 0.37
NUP54-213ENST00000513352 USH1GQ495M9 461 aa17.35■□□□□ 0.37
NUP54-213ENST00000513352 SNRNP48Q6IEG0 339 aaKnown RBP17.35■□□□□ 0.37
NUP54-213ENST00000513352 C17orf99Q6UX52 265 aa17.35■□□□□ 0.37
NUP54-213ENST00000513352 PIGSQ96S52 555 aa17.35■□□□□ 0.37
NUP54-213ENST00000513352 SPATC1LQ9H0A9 340 aa17.35■□□□□ 0.37
NUP54-213ENST00000513352 SH2B1Q9NRF2 756 aaPredicted RBP17.35■□□□□ 0.37
NUP54-213ENST00000513352 FAM217BQ9NTX9 383 aaPredicted RBP17.35■□□□□ 0.37
NUP54-213ENST00000513352 CCPG1Q9ULG6 757 aa17.35■□□□□ 0.37
NUP54-213ENST00000513352 ADAMTS5Q9UNA0 930 aa17.35■□□□□ 0.37
NUP54-213ENST00000513352 CNTNAP5Q8WYK1 1306 aa17.35■□□□□ 0.37
NUP54-213ENST00000513352 CYTH3O43739 400 aa17.34■□□□□ 0.37
NUP54-213ENST00000513352 BCRP11274 1271 aa17.34■□□□□ 0.37
NUP54-213ENST00000513352 STAT3P40763 770 aa17.34■□□□□ 0.37
NUP54-213ENST00000513352 AKAP17AQ02040 695 aaKnown RBP17.34■□□□□ 0.37
NUP54-213ENST00000513352 SLC35G1Q2M3R5 365 aa17.34■□□□□ 0.37
NUP54-213ENST00000513352 QRICH1Q2TAL8 776 aa17.34■□□□□ 0.37
NUP54-213ENST00000513352 POTEEQ6S8J3 1075 aa17.34■□□□□ 0.37
NUP54-213ENST00000513352 NCAPG2Q86XI2 1143 aa17.34■□□□□ 0.37
NUP54-213ENST00000513352 CCDC83Q8IWF9 413 aa17.34■□□□□ 0.37
NUP54-213ENST00000513352 GTF3C6Q969F1 213 aa17.34■□□□□ 0.37
NUP54-213ENST00000513352 AGBL1Q96MI9 1066 aa17.34■□□□□ 0.37
NUP54-213ENST00000513352 CFHR5Q9BXR6 569 aa17.34■□□□□ 0.37
NUP54-213ENST00000513352 SLC26A6Q9BXS9 759 aa17.34■□□□□ 0.37
NUP54-213ENST00000513352 TEX13BQ9BXU2 312 aa17.34■□□□□ 0.37
NUP54-213ENST00000513352 RIOX1Q9H6W3 641 aa17.34■□□□□ 0.37
NUP54-213ENST00000513352 HOMER2Q9NSB8 354 aa17.34■□□□□ 0.37
NUP54-213ENST00000513352 MORF4L1Q9UBU8 362 aa17.34■□□□□ 0.37
NUP54-213ENST00000513352 GPR25O00155 361 aa17.33■□□□□ 0.36
NUP54-213ENST00000513352 ZBTB5O15062 677 aa17.33■□□□□ 0.36
NUP54-213ENST00000513352 CDKL5O76039 1030 aa17.33■□□□□ 0.36
NUP54-213ENST00000513352 ALAS1P13196 640 aa17.33■□□□□ 0.36
NUP54-213ENST00000513352 TAL1P17542 331 aaPredicted RBP17.33■□□□□ 0.36
NUP54-213ENST00000513352 SP3Q02447 781 aa17.33■□□□□ 0.36
NUP54-213ENST00000513352 KIF22Q14807 665 aa17.33■□□□□ 0.36
NUP54-213ENST00000513352 Q3C1V9 767 aa17.33■□□□□ 0.36
NUP54-213ENST00000513352 FBXO11Q86XK2 927 aa17.33■□□□□ 0.36
NUP54-213ENST00000513352 HSCBQ8IWL3 235 aa17.33■□□□□ 0.36
NUP54-213ENST00000513352 REPS2Q8NFH8 660 aa17.33■□□□□ 0.36
NUP54-213ENST00000513352 PHKBQ93100 1093 aa17.33■□□□□ 0.36
NUP54-213ENST00000513352 MOV10L1Q9BXT6 1211 aaKnown RBP17.33■□□□□ 0.36
NUP54-213ENST00000513352 ZNF214Q9UL59 606 aaPredicted RBP17.33■□□□□ 0.36
NUP54-213ENST00000513352 PNMA6FA0A0J9YX94 578 aa17.32■□□□□ 0.36
NUP54-213ENST00000513352 FOXN1O15353 648 aa17.32■□□□□ 0.36
NUP54-213ENST00000513352 FKTNO75072 461 aa17.32■□□□□ 0.36
NUP54-213ENST00000513352 ICAM1P05362 532 aa17.32■□□□□ 0.36
NUP54-213ENST00000513352 SMARCA1P28370 1054 aa17.32■□□□□ 0.36
NUP54-213ENST00000513352 OAZ1P54368 228 aa17.32■□□□□ 0.36
NUP54-213ENST00000513352 SSRP1Q08945 709 aaKnown RBP17.32■□□□□ 0.36
NUP54-213ENST00000513352 TRIM22Q8IYM9 498 aa17.32■□□□□ 0.36
NUP54-213ENST00000513352 TMX3Q96JJ7 454 aa17.32■□□□□ 0.36
NUP54-213ENST00000513352 V9GY48 417 aaPredicted RBP17.32■□□□□ 0.36
NUP54-213ENST00000513352 SMCHD1A6NHR9 2005 aa17.31■□□□□ 0.36
NUP54-213ENST00000513352 MGAMO43451 1857 aa17.31■□□□□ 0.36
NUP54-213ENST00000513352 ZNF536O15090 1300 aa17.31■□□□□ 0.36
NUP54-213ENST00000513352 DTNBO60941 627 aa17.31■□□□□ 0.36
NUP54-213ENST00000513352 SLC25A27O95847 323 aa17.31■□□□□ 0.36
NUP54-213ENST00000513352 IFNAR1P17181 557 aa17.31■□□□□ 0.36
NUP54-213ENST00000513352 HEATR3Q7Z4Q2 680 aa17.31■□□□□ 0.36
NUP54-213ENST00000513352 RIOX2Q8IUF8 465 aa17.31■□□□□ 0.36
NUP54-213ENST00000513352 PORCNQ9H237 461 aa17.31■□□□□ 0.36
NUP54-213ENST00000513352 EFCC1Q9HA90 598 aa17.31■□□□□ 0.36
NUP54-213ENST00000513352 PNMA2Q9UL42 364 aa17.31■□□□□ 0.36
NUP54-213ENST00000513352 ZSWIM8A7E2V4 1837 aa17.31■□□□□ 0.36
NUP54-213ENST00000513352 ATP2A1O14983 1001 aa17.3■□□□□ 0.36
NUP54-213ENST00000513352 FMNL1O95466 1100 aaPredicted RBP17.3■□□□□ 0.36
NUP54-213ENST00000513352 HSPA8P11142 646 aaKnown RBP17.3■□□□□ 0.36
NUP54-213ENST00000513352 ERCC3P19447 782 aa17.3■□□□□ 0.36
NUP54-213ENST00000513352 COPB2P35606 906 aa17.3■□□□□ 0.36
NUP54-213ENST00000513352 CTCFP49711 727 aaPredicted RBP17.3■□□□□ 0.36
NUP54-213ENST00000513352 LACTBP83111 547 aaPredicted RBP17.3■□□□□ 0.36
NUP54-213ENST00000513352 FUT2Q10981 343 aa17.3■□□□□ 0.36
NUP54-213ENST00000513352 CD99L2Q8TCZ2 262 aa17.3■□□□□ 0.36
NUP54-213ENST00000513352 ZNF296Q8WUU4 475 aaPredicted RBP17.3■□□□□ 0.36
NUP54-213ENST00000513352 MTMR8Q96EF0 704 aa17.3■□□□□ 0.36
NUP54-213ENST00000513352 AMNQ9BXJ7 453 aa17.3■□□□□ 0.36
NUP54-213ENST00000513352 RNF146Q9NTX7 359 aa17.3■□□□□ 0.36
NUP54-213ENST00000513352 RIPK3Q9Y572 518 aa17.3■□□□□ 0.36
NUP54-213ENST00000513352 IVNS1ABPQ9Y6Y0 642 aa17.3■□□□□ 0.36
NUP54-213ENST00000513352 CASP8AP2Q9UKL3 1982 aa17.29■□□□□ 0.36
NUP54-213ENST00000513352 PLXNB2O15031 1838 aa17.29■□□□□ 0.36
NUP54-213ENST00000513352 PCNTO95613 3336 aa17.29■□□□□ 0.36
NUP54-213ENST00000513352 PTPDC1A2A3K4 754 aa17.29■□□□□ 0.36
NUP54-213ENST00000513352 TNPO2O14787 897 aaKnown RBP17.29■□□□□ 0.36
NUP54-213ENST00000513352 PPP1R11O60927 126 aaPredicted RBP17.29■□□□□ 0.36
NUP54-213ENST00000513352 MAPK4P31152 587 aa17.29■□□□□ 0.36
NUP54-213ENST00000513352 PSMC4P43686 418 aa17.29■□□□□ 0.36
NUP54-213ENST00000513352 FCGRTP55899 365 aa17.29■□□□□ 0.36
NUP54-213ENST00000513352 ST3GAL1Q11201 340 aa17.29■□□□□ 0.36
NUP54-213ENST00000513352 TRAF1Q13077 416 aa17.29■□□□□ 0.36
NUP54-213ENST00000513352 NTRK3Q16288 839 aa17.29■□□□□ 0.36
NUP54-213ENST00000513352 TKFCQ3LXA3 575 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms