RNA–Protein interactions for RNA: ENST00000487172.1

PCOLCE-208, Transcript of procollagen C-endopeptidase enhancer, humanhuman

TSL 2

Gene PCOLCE, Length 686 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCOLCE-208ENST00000487172 ST18O60284 1047 aa22.5■■□□□ 1.19
PCOLCE-208ENST00000487172 PFKFB2O60825 505 aa22.5■■□□□ 1.19
PCOLCE-208ENST00000487172 ICAM1P05362 532 aa22.5■■□□□ 1.19
PCOLCE-208ENST00000487172 COPB2P35606 906 aa22.5■■□□□ 1.19
PCOLCE-208ENST00000487172 ADD1P35611 737 aaKnown RBP22.5■■□□□ 1.19
PCOLCE-208ENST00000487172 KIF22Q14807 665 aa22.5■■□□□ 1.19
PCOLCE-208ENST00000487172 CPXCR1Q8N123 301 aa22.5■■□□□ 1.19
PCOLCE-208ENST00000487172 RAVER2Q9HCJ3 691 aaKnown RBP22.5■■□□□ 1.19
PCOLCE-208ENST00000487172 VAT1LQ9HCJ6 419 aa22.5■■□□□ 1.19
PCOLCE-208ENST00000487172 DHX16O60231 1041 aaKnown RBP22.49■■□□□ 1.19
PCOLCE-208ENST00000487172 MAPK4P31152 587 aa22.49■■□□□ 1.19
PCOLCE-208ENST00000487172 LBX1P52954 281 aa22.49■■□□□ 1.19
PCOLCE-208ENST00000487172 FUT2Q10981 343 aa22.49■■□□□ 1.19
PCOLCE-208ENST00000487172 PLS1Q14651 629 aa22.49■■□□□ 1.19
PCOLCE-208ENST00000487172 MROH8Q9H579 483 aa22.49■■□□□ 1.19
PCOLCE-208ENST00000487172 LIMCH1Q9UPQ0 1083 aa22.49■■□□□ 1.19
PCOLCE-208ENST00000487172 MGAMO43451 1857 aa22.48■■□□□ 1.19
PCOLCE-208ENST00000487172 SNAP25P60880 206 aa22.48■■□□□ 1.19
PCOLCE-208ENST00000487172 CCT2P78371 535 aaKnown RBP22.48■■□□□ 1.19
PCOLCE-208ENST00000487172 ARHGEF6Q15052 776 aa22.48■■□□□ 1.19
PCOLCE-208ENST00000487172 NTRK3Q16288 839 aa22.48■■□□□ 1.19
PCOLCE-208ENST00000487172 CDC37Q16543 378 aaPredicted RBP22.48■■□□□ 1.19
PCOLCE-208ENST00000487172 ME3Q16798 604 aa22.48■■□□□ 1.19
PCOLCE-208ENST00000487172 QRICH1Q2TAL8 776 aa22.48■■□□□ 1.19
PCOLCE-208ENST00000487172 TKFCQ3LXA3 575 aa22.48■■□□□ 1.19
PCOLCE-208ENST00000487172 SNRNP48Q6IEG0 339 aaKnown RBP22.48■■□□□ 1.19
PCOLCE-208ENST00000487172 CCDC174Q6PII3 467 aa22.48■■□□□ 1.19
PCOLCE-208ENST00000487172 PORCNQ9H237 461 aa22.48■■□□□ 1.19
PCOLCE-208ENST00000487172 SLKQ9H2G2 1235 aaPredicted RBP22.48■■□□□ 1.19
PCOLCE-208ENST00000487172 ZBTB5O15062 677 aa22.47■■□□□ 1.19
PCOLCE-208ENST00000487172 GNRH1P01148 92 aa22.47■■□□□ 1.19
PCOLCE-208ENST00000487172 ERCC3P19447 782 aa22.47■■□□□ 1.19
PCOLCE-208ENST00000487172 PSMC4P43686 418 aa22.47■■□□□ 1.19
PCOLCE-208ENST00000487172 MCM2P49736 904 aa22.47■■□□□ 1.19
PCOLCE-208ENST00000487172 FCGRTP55899 365 aa22.47■■□□□ 1.19
PCOLCE-208ENST00000487172 CMTR1Q8N1G2 835 aaKnown RBP22.47■■□□□ 1.19
PCOLCE-208ENST00000487172 CHST13Q8NET6 341 aa22.47■■□□□ 1.19
PCOLCE-208ENST00000487172 CD99L2Q8TCZ2 262 aa22.47■■□□□ 1.19
PCOLCE-208ENST00000487172 ZSCAN31Q96LW9 406 aaPredicted RBP22.47■■□□□ 1.19
PCOLCE-208ENST00000487172 AGBL1Q96MI9 1066 aa22.47■■□□□ 1.19
PCOLCE-208ENST00000487172 PIGSQ96S52 555 aa22.47■■□□□ 1.19
PCOLCE-208ENST00000487172 EFCC1Q9HA90 598 aa22.47■■□□□ 1.19
PCOLCE-208ENST00000487172 PRDM10Q9NQV6 1147 aa22.47■■□□□ 1.19
PCOLCE-208ENST00000487172 PNMA6FA0A0J9YX94 578 aa22.46■■□□□ 1.19
PCOLCE-208ENST00000487172 CTGFP29279 349 aa22.46■■□□□ 1.19
PCOLCE-208ENST00000487172 SCRN1Q12765 414 aa22.46■■□□□ 1.19
PCOLCE-208ENST00000487172 TRAF1Q13077 416 aa22.46■■□□□ 1.19
PCOLCE-208ENST00000487172 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.46■■□□□ 1.19
PCOLCE-208ENST00000487172 CCAR1Q8IX12 1150 aaKnown RBP22.46■■□□□ 1.19
PCOLCE-208ENST00000487172 RRP36Q96EU6 259 aaKnown RBP22.46■■□□□ 1.19
PCOLCE-208ENST00000487172 CCPG1Q9ULG6 757 aa22.46■■□□□ 1.19
PCOLCE-208ENST00000487172 RIPK3Q9Y572 518 aa22.46■■□□□ 1.19
PCOLCE-208ENST00000487172 CNTNAP5Q8WYK1 1306 aa22.46■■□□□ 1.19
PCOLCE-208ENST00000487172 MYH6P13533 1939 aa22.45■■□□□ 1.18
PCOLCE-208ENST00000487172 BAZ2BQ9UIF8 2168 aaKnown RBP22.45■■□□□ 1.18
PCOLCE-208ENST00000487172 IFNAR1P17181 557 aa22.45■■□□□ 1.18
PCOLCE-208ENST00000487172 STK3Q13188 491 aa22.45■■□□□ 1.18
PCOLCE-208ENST00000487172 NOL8Q76FK4 1167 aaKnown RBP22.45■■□□□ 1.18
PCOLCE-208ENST00000487172 GPR142Q7Z601 462 aa22.45■■□□□ 1.18
PCOLCE-208ENST00000487172 NCAPG2Q86XI2 1143 aa22.45■■□□□ 1.18
PCOLCE-208ENST00000487172 FBXO11Q86XK2 927 aa22.45■■□□□ 1.18
PCOLCE-208ENST00000487172 CCDC82Q8N4S0 544 aa22.45■■□□□ 1.18
PCOLCE-208ENST00000487172 TRIM47Q96LD4 638 aa22.45■■□□□ 1.18
PCOLCE-208ENST00000487172 AMNQ9BXJ7 453 aa22.45■■□□□ 1.18
PCOLCE-208ENST00000487172 NCOA5Q9HCD5 579 aaKnown RBP22.45■■□□□ 1.18
PCOLCE-208ENST00000487172 FBXO40Q9UH90 709 aa22.45■■□□□ 1.18
PCOLCE-208ENST00000487172 CASP8AP2Q9UKL3 1982 aa22.45■■□□□ 1.18
PCOLCE-208ENST00000487172 TNPO2O14787 897 aaKnown RBP22.44■■□□□ 1.18
PCOLCE-208ENST00000487172 STRNO43815 780 aa22.44■■□□□ 1.18
PCOLCE-208ENST00000487172 FMNL1O95466 1100 aaPredicted RBP22.44■■□□□ 1.18
PCOLCE-208ENST00000487172 CAP1Q01518 475 aa22.44■■□□□ 1.18
PCOLCE-208ENST00000487172 CPLX2Q6PUV4 134 aaKnown RBP22.44■■□□□ 1.18
PCOLCE-208ENST00000487172 PLEKHH3Q7Z736 793 aa22.44■■□□□ 1.18
PCOLCE-208ENST00000487172 HOMER1Q86YM7 354 aa22.44■■□□□ 1.18
PCOLCE-208ENST00000487172 COA7Q96BR5 231 aa22.44■■□□□ 1.18
PCOLCE-208ENST00000487172 TRERF1Q96PN7 1200 aa22.44■■□□□ 1.18
PCOLCE-208ENST00000487172 ARHGAP39Q9C0H5 1083 aa22.44■■□□□ 1.18
PCOLCE-208ENST00000487172 SH2B1Q9NRF2 756 aaPredicted RBP22.44■■□□□ 1.18
PCOLCE-208ENST00000487172 ABCB11O95342 1321 aa22.43■■□□□ 1.18
PCOLCE-208ENST00000487172 PRPF3O43395 683 aaKnown RBP22.43■■□□□ 1.18
PCOLCE-208ENST00000487172 LARGE1O95461 756 aa22.43■■□□□ 1.18
PCOLCE-208ENST00000487172 ALAS1P13196 640 aa22.43■■□□□ 1.18
PCOLCE-208ENST00000487172 PTPREP23469 700 aa22.43■■□□□ 1.18
PCOLCE-208ENST00000487172 HOXD10P28358 340 aa22.43■■□□□ 1.18
PCOLCE-208ENST00000487172 ABRAQ8N0Z2 381 aa22.43■■□□□ 1.18
PCOLCE-208ENST00000487172 GTF3C6Q969F1 213 aa22.43■■□□□ 1.18
PCOLCE-208ENST00000487172 RNF26Q9BY78 433 aaPredicted RBP22.43■■□□□ 1.18
PCOLCE-208ENST00000487172 MAF1Q9H063 256 aa22.43■■□□□ 1.18
PCOLCE-208ENST00000487172 RBM27Q9P2N5 1060 aaKnown RBP22.43■■□□□ 1.18
PCOLCE-208ENST00000487172 SEC63Q9UGP8 760 aaKnown RBP22.43■■□□□ 1.18
PCOLCE-208ENST00000487172 SMCHD1A6NHR9 2005 aa22.42■■□□□ 1.18
PCOLCE-208ENST00000487172 CPLX1O14810 134 aa22.42■■□□□ 1.18
PCOLCE-208ENST00000487172 PPP1R11O60927 126 aaPredicted RBP22.42■■□□□ 1.18
PCOLCE-208ENST00000487172 ACAD9Q9H845 621 aa22.42■■□□□ 1.18
PCOLCE-208ENST00000487172 RNF146Q9NTX7 359 aa22.42■■□□□ 1.18
PCOLCE-208ENST00000487172 GJD2Q9UKL4 321 aa22.42■■□□□ 1.18
PCOLCE-208ENST00000487172 V9GY48 417 aaPredicted RBP22.42■■□□□ 1.18
PCOLCE-208ENST00000487172 ZSWIM8A7E2V4 1837 aa22.41■■□□□ 1.18
PCOLCE-208ENST00000487172 SLC15A5A6NIM6 579 aa22.41■■□□□ 1.18
PCOLCE-208ENST00000487172 CDKL5O76039 1030 aa22.41■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms