RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 GRAPQ13588 217 aa6.67□□□□□ -1.34
VPS41-211ENST00000466017 UBE4AQ14139 1066 aa6.67□□□□□ -1.34
VPS41-211ENST00000466017 SETDB1Q15047 1291 aa6.67□□□□□ -1.34
VPS41-211ENST00000466017 TAF7LQ5H9L4 462 aa6.67□□□□□ -1.34
VPS41-211ENST00000466017 CEP135Q66GS9 1140 aa6.67□□□□□ -1.34
VPS41-211ENST00000466017 DDX46Q7L014 1031 aaKnown RBP6.67□□□□□ -1.34
VPS41-211ENST00000466017 ANKRD18AQ8IVF6 992 aa6.67□□□□□ -1.34
VPS41-211ENST00000466017 KLHDC4Q8TBB5 520 aa6.67□□□□□ -1.34
VPS41-211ENST00000466017 GRAPLQ8TC17 118 aaPredicted RBP6.67□□□□□ -1.34
VPS41-211ENST00000466017 PI4K2BQ8TCG2 481 aa6.67□□□□□ -1.34
VPS41-211ENST00000466017 RBM17Q96I25 401 aaKnown RBP6.67□□□□□ -1.34
VPS41-211ENST00000466017 GPATCH3Q96I76 525 aa6.67□□□□□ -1.34
VPS41-211ENST00000466017 MPHOSPH8Q99549 860 aa6.67□□□□□ -1.34
VPS41-211ENST00000466017 PUS3Q9BZE2 481 aaKnown RBP6.67□□□□□ -1.34
VPS41-211ENST00000466017 IL1RAPL2Q9NP60 686 aa6.67□□□□□ -1.34
VPS41-211ENST00000466017 ECHDC1Q9NTX5 307 aa6.67□□□□□ -1.34
VPS41-211ENST00000466017 EGFL7Q9UHF1 273 aa6.67□□□□□ -1.34
VPS41-211ENST00000466017 FAM177BA6PVY3 158 aa6.66□□□□□ -1.34
VPS41-211ENST00000466017 LINC01387J3KSC0 135 aa6.66□□□□□ -1.34
VPS41-211ENST00000466017 GSPT1P15170 499 aaKnown RBP6.66□□□□□ -1.34
VPS41-211ENST00000466017 CES1P23141 567 aa6.66□□□□□ -1.34
VPS41-211ENST00000466017 ALDH1B1P30837 517 aa6.66□□□□□ -1.34
VPS41-211ENST00000466017 PDE6BP35913 854 aa6.66□□□□□ -1.34
VPS41-211ENST00000466017 PCSK7Q16549 785 aa6.66□□□□□ -1.34
VPS41-211ENST00000466017 PEAR1Q5VY43 1037 aaPredicted RBP6.66□□□□□ -1.34
VPS41-211ENST00000466017 ALKBH2Q6NS38 261 aa6.66□□□□□ -1.34
VPS41-211ENST00000466017 C15orf52Q6ZUT6 534 aaKnown RBP6.66□□□□□ -1.34
VPS41-211ENST00000466017 AACSQ86V21 672 aa6.66□□□□□ -1.34
VPS41-211ENST00000466017 WFDC8Q8IUA0 241 aa6.66□□□□□ -1.34
VPS41-211ENST00000466017 LPIN2Q92539 896 aa6.66□□□□□ -1.34
VPS41-211ENST00000466017 PBX4Q9BYU1 374 aa6.66□□□□□ -1.34
VPS41-211ENST00000466017 ANKRD2Q9GZV1 360 aa6.66□□□□□ -1.34
VPS41-211ENST00000466017 SEC31BQ9NQW1 1179 aa6.66□□□□□ -1.34
VPS41-211ENST00000466017 CNNM1Q9NRU3 951 aa6.66□□□□□ -1.34
VPS41-211ENST00000466017 DZANK1Q9NVP4 752 aa6.66□□□□□ -1.34
VPS41-211ENST00000466017 KCNK4Q9NYG8 393 aa6.66□□□□□ -1.34
VPS41-211ENST00000466017 MINPP1Q9UNW1 487 aa6.66□□□□□ -1.34
VPS41-211ENST00000466017 LEMD3Q9Y2U8 911 aa6.66□□□□□ -1.34
VPS41-211ENST00000466017 ABCC12Q96J65 1359 aa6.66□□□□□ -1.34
VPS41-211ENST00000466017 TUBGCP6Q96RT7 1819 aa6.65□□□□□ -1.34
VPS41-211ENST00000466017 A0A1B0GUL7 405 aa6.65□□□□□ -1.34
VPS41-211ENST00000466017 ALX3O95076 343 aa6.65□□□□□ -1.34
VPS41-211ENST00000466017 MMP10P09238 476 aa6.65□□□□□ -1.34
VPS41-211ENST00000466017 SRGNP10124 158 aa6.65□□□□□ -1.34
VPS41-211ENST00000466017 NPR1P16066 1061 aa6.65□□□□□ -1.34
VPS41-211ENST00000466017 SDSP20132 328 aa6.65□□□□□ -1.34
VPS41-211ENST00000466017 EPHA1P21709 976 aa6.65□□□□□ -1.34
VPS41-211ENST00000466017 TIMM10P62072 90 aa6.65□□□□□ -1.34
VPS41-211ENST00000466017 ORC1Q13415 861 aa6.65□□□□□ -1.34
VPS41-211ENST00000466017 SUZ12Q15022 739 aaKnown RBP6.65□□□□□ -1.34
VPS41-211ENST00000466017 PRRT3Q5FWE3 981 aa6.65□□□□□ -1.34
VPS41-211ENST00000466017 METTL24Q5JXM2 366 aa6.65□□□□□ -1.34
VPS41-211ENST00000466017 CCDC158Q5M9N0 1113 aa6.65□□□□□ -1.34
VPS41-211ENST00000466017 STYK1Q6J9G0 422 aa6.65□□□□□ -1.34
VPS41-211ENST00000466017 SKAP1Q86WV1 359 aa6.65□□□□□ -1.34
VPS41-211ENST00000466017 NCAPG2Q86XI2 1143 aa6.65□□□□□ -1.34
VPS41-211ENST00000466017 FBXO11Q86XK2 927 aa6.65□□□□□ -1.34
VPS41-211ENST00000466017 GLYCTKQ8IVS8 523 aa6.65□□□□□ -1.34
VPS41-211ENST00000466017 OTUD7AQ8TE49 926 aaPredicted RBP6.65□□□□□ -1.34
VPS41-211ENST00000466017 EVI5LQ96CN4 794 aa6.65□□□□□ -1.34
VPS41-211ENST00000466017 MASTLQ96GX5 879 aa6.65□□□□□ -1.34
VPS41-211ENST00000466017 CCDC8Q9H0W5 538 aaPredicted RBP6.65□□□□□ -1.34
VPS41-211ENST00000466017 SIL1Q9H173 461 aa6.65□□□□□ -1.34
VPS41-211ENST00000466017 PODXL2Q9NZ53 605 aa6.65□□□□□ -1.34
VPS41-211ENST00000466017 DBNLQ9UJU6 430 aaKnown RBP6.65□□□□□ -1.34
VPS41-211ENST00000466017 LRP5O75197 1615 aa6.65□□□□□ -1.35
VPS41-211ENST00000466017 SOWAHDA6NJG2 315 aa6.64□□□□□ -1.35
VPS41-211ENST00000466017 METTL12A8MUP2 240 aa6.64□□□□□ -1.35
VPS41-211ENST00000466017 HIP1O00291 1037 aa6.64□□□□□ -1.35
VPS41-211ENST00000466017 PIK3R2O00459 728 aa6.64□□□□□ -1.35
VPS41-211ENST00000466017 DLL1O00548 723 aa6.64□□□□□ -1.35
VPS41-211ENST00000466017 NPHP1O15259 732 aa6.64□□□□□ -1.35
VPS41-211ENST00000466017 DDX3YO15523 660 aaKnown RBP6.64□□□□□ -1.35
VPS41-211ENST00000466017 IFIT1P09914 478 aaKnown RBP6.64□□□□□ -1.35
VPS41-211ENST00000466017 UQCRFS1P1P0C7P4 283 aa6.64□□□□□ -1.35
VPS41-211ENST00000466017 CHRNDQ07001 517 aa6.64□□□□□ -1.35
VPS41-211ENST00000466017 PUM3Q15397 648 aaKnown RBP6.64□□□□□ -1.35
VPS41-211ENST00000466017 ATP2B3Q16720 1220 aa6.64□□□□□ -1.35
VPS41-211ENST00000466017 TMED8Q6PL24 325 aaPredicted RBP6.64□□□□□ -1.35
VPS41-211ENST00000466017 ALYREFQ86V81 257 aaKnown RBP6.64□□□□□ -1.35
VPS41-211ENST00000466017 SP8Q8IXZ3 490 aa6.64□□□□□ -1.35
VPS41-211ENST00000466017 CNTROBQ8N137 903 aa6.64□□□□□ -1.35
VPS41-211ENST00000466017 CELF1Q92879 486 aaKnown RBP6.64□□□□□ -1.35
VPS41-211ENST00000466017 HAUS7Q99871 368 aa6.64□□□□□ -1.35
VPS41-211ENST00000466017 DBNDD2Q9BQY9 259 aa6.64□□□□□ -1.35
VPS41-211ENST00000466017 ZKSCAN3Q9BRR0 538 aa6.64□□□□□ -1.35
VPS41-211ENST00000466017 MTFR1LQ9H019 292 aa6.64□□□□□ -1.35
VPS41-211ENST00000466017 ZFYVE28Q9HCC9 887 aa6.64□□□□□ -1.35
VPS41-211ENST00000466017 TPSG1Q9NRR2 321 aa6.64□□□□□ -1.35
VPS41-211ENST00000466017 ZNF609O15014 1411 aa6.63□□□□□ -1.35
VPS41-211ENST00000466017 GPR182O15218 404 aa6.63□□□□□ -1.35
VPS41-211ENST00000466017 CDC45O75419 566 aa6.63□□□□□ -1.35
VPS41-211ENST00000466017 WISP1O95388 367 aa6.63□□□□□ -1.35
VPS41-211ENST00000466017 IGHA1P01876 353 aa6.63□□□□□ -1.35
VPS41-211ENST00000466017 SLC5A1P13866 664 aa6.63□□□□□ -1.35
VPS41-211ENST00000466017 ELNP15502 786 aa6.63□□□□□ -1.35
VPS41-211ENST00000466017 TGFB2P61812 414 aa6.63□□□□□ -1.35
VPS41-211ENST00000466017 NRG1Q02297 640 aaPredicted RBP6.63□□□□□ -1.35
VPS41-211ENST00000466017 ADGRE1Q14246 886 aa6.63□□□□□ -1.35
VPS41-211ENST00000466017 MBTPS1Q14703 1052 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms