RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 PALM3A6NDB9 673 aaPredicted RBP12.45□□□□□ -0.42
UBR4-208ENST00000459947 HMGCRP04035 888 aa12.45□□□□□ -0.42
UBR4-208ENST00000459947 GRK4P32298 578 aa12.45□□□□□ -0.42
UBR4-208ENST00000459947 OLFML2BQ68BL8 750 aa12.45□□□□□ -0.42
UBR4-208ENST00000459947 MCF2L2Q86YR7 1114 aa12.45□□□□□ -0.42
UBR4-208ENST00000459947 SPZ1Q9BXG8 430 aa12.45□□□□□ -0.42
UBR4-208ENST00000459947 ALDH8A1Q9H2A2 487 aaPredicted RBP12.45□□□□□ -0.42
UBR4-208ENST00000459947 MRPL11Q9Y3B7 192 aaKnown RBP12.45□□□□□ -0.42
UBR4-208ENST00000459947 hCG_1984214I3L0E3 225 aa12.44□□□□□ -0.42
UBR4-208ENST00000459947 DHX16O60231 1041 aaKnown RBP12.44□□□□□ -0.42
UBR4-208ENST00000459947 ADCY3O60266 1144 aa12.44□□□□□ -0.42
UBR4-208ENST00000459947 SAMD1Q6SPF0 538 aaPredicted RBP12.44□□□□□ -0.42
UBR4-208ENST00000459947 ZNF467Q7Z7K2 595 aaPredicted RBP12.44□□□□□ -0.42
UBR4-208ENST00000459947 ZNF713Q8N859 430 aaPredicted RBP12.44□□□□□ -0.42
UBR4-208ENST00000459947 RGS22Q8NE09 1264 aa12.44□□□□□ -0.42
UBR4-208ENST00000459947 NKX2-3Q8TAU0 364 aa12.44□□□□□ -0.42
UBR4-208ENST00000459947 CCPG1Q9ULG6 757 aa12.44□□□□□ -0.42
UBR4-208ENST00000459947 HPS5Q9UPZ3 1129 aa12.44□□□□□ -0.42
UBR4-208ENST00000459947 FLT3LGP49771 235 aa12.44□□□□□ -0.42
UBR4-208ENST00000459947 ZSWIM6Q9HCJ5 1215 aa12.44□□□□□ -0.42
UBR4-208ENST00000459947 PLXNB2O15031 1838 aa12.44□□□□□ -0.42
UBR4-208ENST00000459947 KLRF2D3W0D1 207 aa12.44□□□□□ -0.42
UBR4-208ENST00000459947 PRKCZQ05513 592 aa12.44□□□□□ -0.42
UBR4-208ENST00000459947 COL13A1Q5TAT6 717 aaPredicted RBP12.44□□□□□ -0.42
UBR4-208ENST00000459947 DPP9Q86TI2 863 aa12.44□□□□□ -0.42
UBR4-208ENST00000459947 USP6NLQ92738 828 aa12.44□□□□□ -0.42
UBR4-208ENST00000459947 ABHD8Q96I13 439 aa12.44□□□□□ -0.42
UBR4-208ENST00000459947 PTCH2Q9Y6C5 1203 aa12.44□□□□□ -0.42
UBR4-208ENST00000459947 UTRNP46939 3433 aa12.44□□□□□ -0.42
UBR4-208ENST00000459947 NID2Q14112 1375 aa12.44□□□□□ -0.42
UBR4-208ENST00000459947 ZBTB43O43298 467 aa12.43□□□□□ -0.42
UBR4-208ENST00000459947 CPLX2Q6PUV4 134 aaKnown RBP12.43□□□□□ -0.42
UBR4-208ENST00000459947 RUFY3Q7L099 469 aa12.43□□□□□ -0.42
UBR4-208ENST00000459947 GJD2Q9UKL4 321 aa12.43□□□□□ -0.42
UBR4-208ENST00000459947 MTMR7Q9Y216 660 aa12.43□□□□□ -0.42
UBR4-208ENST00000459947 FRMPD2Q68DX3 1309 aaPredicted RBP12.43□□□□□ -0.42
UBR4-208ENST00000459947 COL11A1P12107 1806 aaPredicted RBP12.43□□□□□ -0.42
UBR4-208ENST00000459947 TROAPQ12815 778 aa12.43□□□□□ -0.42
UBR4-208ENST00000459947 Q3C1V9 767 aa12.43□□□□□ -0.42
UBR4-208ENST00000459947 RASEFQ8IZ41 740 aa12.43□□□□□ -0.42
UBR4-208ENST00000459947 TMEM106CQ9BVX2 250 aa12.43□□□□□ -0.42
UBR4-208ENST00000459947 AMNQ9BXJ7 453 aa12.43□□□□□ -0.42
UBR4-208ENST00000459947 PORCNQ9H237 461 aa12.43□□□□□ -0.42
UBR4-208ENST00000459947 RNF146Q9NTX7 359 aa12.43□□□□□ -0.42
UBR4-208ENST00000459947 SEC63Q9UGP8 760 aaKnown RBP12.43□□□□□ -0.42
UBR4-208ENST00000459947 GTF3C3Q9Y5Q9 886 aa12.43□□□□□ -0.42
UBR4-208ENST00000459947 FAM177A1Q8N128 213 aaPredicted RBP12.43□□□□□ -0.42
UBR4-208ENST00000459947 RRP36Q96EU6 259 aaKnown RBP12.43□□□□□ -0.42
UBR4-208ENST00000459947 DDX11Q96FC9 970 aa12.43□□□□□ -0.42
UBR4-208ENST00000459947 AGXT2Q9BYV1 514 aa12.43□□□□□ -0.42
UBR4-208ENST00000459947 ARHGAP39Q9C0H5 1083 aa12.43□□□□□ -0.42
UBR4-208ENST00000459947 GLT8D2Q9H1C3 349 aa12.43□□□□□ -0.42
UBR4-208ENST00000459947 CASTP20810 708 aaKnown RBP12.42□□□□□ -0.42
UBR4-208ENST00000459947 FBXO11Q86XK2 927 aa12.42□□□□□ -0.42
UBR4-208ENST00000459947 NUP133Q8WUM0 1156 aa12.42□□□□□ -0.42
UBR4-208ENST00000459947 RIOX1Q9H6W3 641 aa12.42□□□□□ -0.42
UBR4-208ENST00000459947 RAVER2Q9HCJ3 691 aaKnown RBP12.42□□□□□ -0.42
UBR4-208ENST00000459947 CDC37Q16543 378 aaPredicted RBP12.42□□□□□ -0.42
UBR4-208ENST00000459947 RTN1Q16799 776 aa12.42□□□□□ -0.42
UBR4-208ENST00000459947 CPXCR1Q8N123 301 aa12.42□□□□□ -0.42
UBR4-208ENST00000459947 BIN2Q9UBW5 565 aaPredicted RBP12.42□□□□□ -0.42
UBR4-208ENST00000459947 ADD3Q9UEY8 706 aaKnown RBP12.42□□□□□ -0.42
UBR4-208ENST00000459947 MTMR8Q96EF0 704 aa12.42□□□□□ -0.42
UBR4-208ENST00000459947 MAD2L2Q9UI95 211 aa12.42□□□□□ -0.42
UBR4-208ENST00000459947 GOLGA8AA7E2F4 631 aa12.41□□□□□ -0.42
UBR4-208ENST00000459947 GOLGA8BA8MQT2 603 aa12.41□□□□□ -0.42
UBR4-208ENST00000459947 ZBTB5O15062 677 aa12.41□□□□□ -0.42
UBR4-208ENST00000459947 MSCO60682 206 aa12.41□□□□□ -0.42
UBR4-208ENST00000459947 TRERF1Q96PN7 1200 aa12.41□□□□□ -0.42
UBR4-208ENST00000459947 PNMA6FA0A0J9YX94 578 aa12.41□□□□□ -0.42
UBR4-208ENST00000459947 ASB14A6NK59 587 aa12.41□□□□□ -0.42
UBR4-208ENST00000459947 ALAS1P13196 640 aa12.41□□□□□ -0.42
UBR4-208ENST00000459947 ADORA2AP29274 412 aa12.41□□□□□ -0.42
UBR4-208ENST00000459947 APOA5Q6Q788 366 aa12.41□□□□□ -0.42
UBR4-208ENST00000459947 ANKRD35Q8N283 1001 aa12.41□□□□□ -0.42
UBR4-208ENST00000459947 FANCBQ8NB91 859 aa12.41□□□□□ -0.42
UBR4-208ENST00000459947 TAF6LQ9Y6J9 622 aa12.41□□□□□ -0.42
UBR4-208ENST00000459947 EVCP57679 992 aa12.41□□□□□ -0.42
UBR4-208ENST00000459947 TTBK2Q6IQ55 1244 aa12.41□□□□□ -0.42
UBR4-208ENST00000459947 PPP1R18Q6NYC8 613 aa12.41□□□□□ -0.42
UBR4-208ENST00000459947 CCDC174Q6PII3 467 aa12.41□□□□□ -0.42
UBR4-208ENST00000459947 ADGRF4Q8IZF3 695 aa12.41□□□□□ -0.42
UBR4-208ENST00000459947 KLF18A0A0U1RQI7 1052 aa12.4□□□□□ -0.42
UBR4-208ENST00000459947 POTEB2H3BUK9 544 aa12.4□□□□□ -0.42
UBR4-208ENST00000459947 MCTP2Q6DN12 878 aa12.4□□□□□ -0.42
UBR4-208ENST00000459947 PDRG1Q9NUG6 133 aa12.4□□□□□ -0.42
UBR4-208ENST00000459947 RBBP6Q7Z6E9 1792 aaKnown RBP12.4□□□□□ -0.42
UBR4-208ENST00000459947 SYNGAP1Q96PV0 1343 aa12.4□□□□□ -0.42
UBR4-208ENST00000459947 CTGFP29279 349 aa12.4□□□□□ -0.42
UBR4-208ENST00000459947 Q6ZUG5 572 aa12.4□□□□□ -0.42
UBR4-208ENST00000459947 ZNF274Q96GC6 653 aaPredicted RBP12.4□□□□□ -0.42
UBR4-208ENST00000459947 ZNF333Q96JL9 665 aa12.4□□□□□ -0.42
UBR4-208ENST00000459947 GABRQQ9UN88 632 aa12.4□□□□□ -0.42
UBR4-208ENST00000459947 ZNF536O15090 1300 aa12.4□□□□□ -0.42
UBR4-208ENST00000459947 CDKL5O76039 1030 aa12.4□□□□□ -0.42
UBR4-208ENST00000459947 CYP2B6P20813 491 aa12.4□□□□□ -0.42
UBR4-208ENST00000459947 ADCK5Q3MIX3 580 aa12.4□□□□□ -0.42
UBR4-208ENST00000459947 TMTC3Q6ZXV5 915 aa12.4□□□□□ -0.42
UBR4-208ENST00000459947 JMJD4Q9H9V9 463 aa12.4□□□□□ -0.42
UBR4-208ENST00000459947 SLC16A2P36021 539 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms