RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 SNAPC2Q13487 334 aa26.48■■□□□ 1.83
CPSF4-204ENST00000436336 GALNT17Q6IS24 598 aa26.48■■□□□ 1.83
CPSF4-204ENST00000436336 GADL1Q6ZQY3 521 aa26.48■■□□□ 1.83
CPSF4-204ENST00000436336 DIS3L2Q8IYB7 885 aaKnown RBP26.48■■□□□ 1.83
CPSF4-204ENST00000436336 AMNQ9BXJ7 453 aa26.48■■□□□ 1.83
CPSF4-204ENST00000436336 BRMS1Q9HCU9 246 aa26.48■■□□□ 1.83
CPSF4-204ENST00000436336 FDX1P10109 184 aa26.47■■□□□ 1.83
CPSF4-204ENST00000436336 TRAF1Q13077 416 aa26.47■■□□□ 1.83
CPSF4-204ENST00000436336 FASTKD5Q7L8L6 764 aaKnown RBP26.47■■□□□ 1.83
CPSF4-204ENST00000436336 FBXO11Q86XK2 927 aa26.47■■□□□ 1.83
CPSF4-204ENST00000436336 COA7Q96BR5 231 aa26.47■■□□□ 1.83
CPSF4-204ENST00000436336 FOXP1Q9H334 677 aaPredicted RBP26.47■■□□□ 1.83
CPSF4-204ENST00000436336 SMCHD1A6NHR9 2005 aa26.47■■□□□ 1.83
CPSF4-204ENST00000436336 ESYT2A0FGR8 921 aa26.46■■□□□ 1.83
CPSF4-204ENST00000436336 U2AF2P26368 475 aaKnown RBP eCLIP26.46■■□□□ 1.83
CPSF4-204ENST00000436336 KRT2P35908 639 aa26.46■■□□□ 1.83
CPSF4-204ENST00000436336 SNAP25P60880 206 aa26.46■■□□□ 1.83
CPSF4-204ENST00000436336 GNL2Q13823 731 aaKnown RBP26.46■■□□□ 1.83
CPSF4-204ENST00000436336 CLEC17AQ6ZS10 378 aa26.46■■□□□ 1.83
CPSF4-204ENST00000436336 BRAPQ7Z569 592 aa26.46■■□□□ 1.83
CPSF4-204ENST00000436336 ZMYND12Q9H0C1 365 aa26.46■■□□□ 1.83
CPSF4-204ENST00000436336 MYPNQ86TC9 1320 aa26.46■■□□□ 1.83
CPSF4-204ENST00000436336 KIF28PB7ZC32 967 aa26.45■■□□□ 1.83
CPSF4-204ENST00000436336 ZBTB48P10074 688 aaPredicted RBP26.45■■□□□ 1.83
CPSF4-204ENST00000436336 COG2Q14746 738 aa26.45■■□□□ 1.83
CPSF4-204ENST00000436336 NPY5RQ15761 445 aa26.45■■□□□ 1.83
CPSF4-204ENST00000436336 TREML2Q5T2D2 321 aa26.45■■□□□ 1.83
CPSF4-204ENST00000436336 SAMD1Q6SPF0 538 aaPredicted RBP26.45■■□□□ 1.83
CPSF4-204ENST00000436336 PCDHA4Q9UN74 947 aa26.45■■□□□ 1.83
CPSF4-204ENST00000436336 PCDHA1Q9Y5I3 950 aa26.45■■□□□ 1.83
CPSF4-204ENST00000436336 BTBD18B2RXH4 712 aa26.45■■□□□ 1.82
CPSF4-204ENST00000436336 HOXA7P31268 230 aaPredicted RBP26.45■■□□□ 1.82
CPSF4-204ENST00000436336 DSG3P32926 999 aa26.45■■□□□ 1.82
CPSF4-204ENST00000436336 SAPCD2Q86UD0 394 aa26.45■■□□□ 1.82
CPSF4-204ENST00000436336 ZNF784Q8NCA9 323 aaPredicted RBP26.45■■□□□ 1.82
CPSF4-204ENST00000436336 DAGLBQ8NCG7 672 aa26.45■■□□□ 1.82
CPSF4-204ENST00000436336 C6orf50Q9HD87 102 aa26.45■■□□□ 1.82
CPSF4-204ENST00000436336 A0A0G2JMZ2 1700 aa26.44■■□□□ 1.82
CPSF4-204ENST00000436336 SMCO2A6NFE2 343 aa26.44■■□□□ 1.82
CPSF4-204ENST00000436336 GNA11P29992 359 aa26.44■■□□□ 1.82
CPSF4-204ENST00000436336 FSTL1Q12841 308 aa26.44■■□□□ 1.82
CPSF4-204ENST00000436336 MOGSQ13724 837 aa26.44■■□□□ 1.82
CPSF4-204ENST00000436336 SPRYD7Q5W111 196 aa26.44■■□□□ 1.82
CPSF4-204ENST00000436336 GBP4Q96PP9 640 aa26.44■■□□□ 1.82
CPSF4-204ENST00000436336 SLC38A10Q9HBR0 1119 aa26.44■■□□□ 1.82
CPSF4-204ENST00000436336 AGTPBP1Q9UPW5 1226 aa26.44■■□□□ 1.82
CPSF4-204ENST00000436336 GTF2A2P52657 109 aa26.43■■□□□ 1.82
CPSF4-204ENST00000436336 CCDC174Q6PII3 467 aa26.43■■□□□ 1.82
CPSF4-204ENST00000436336 BLIDQ8IZY5 108 aa26.43■■□□□ 1.82
CPSF4-204ENST00000436336 HOXC10Q9NYD6 342 aa26.43■■□□□ 1.82
CPSF4-204ENST00000436336 ADAMTS5Q9UNA0 930 aa26.43■■□□□ 1.82
CPSF4-204ENST00000436336 ZBED4O75132 1171 aa26.42■■□□□ 1.82
CPSF4-204ENST00000436336 BAG4O95429 457 aaKnown RBP26.42■■□□□ 1.82
CPSF4-204ENST00000436336 OXER1Q8TDS5 423 aa26.42■■□□□ 1.82
CPSF4-204ENST00000436336 CETPP11597 493 aa26.42■■□□□ 1.82
CPSF4-204ENST00000436336 PABPC4Q13310 644 aaKnown RBP eCLIP26.42■■□□□ 1.82
CPSF4-204ENST00000436336 NOSTRINQ8IVI9 506 aa26.42■■□□□ 1.82
CPSF4-204ENST00000436336 ATG4CQ96DT6 458 aa26.42■■□□□ 1.82
CPSF4-204ENST00000436336 PNMA2Q9UL42 364 aa26.42■■□□□ 1.82
CPSF4-204ENST00000436336 CTDP1Q9Y5B0 961 aaPredicted RBP26.42■■□□□ 1.82
CPSF4-204ENST00000436336 TLL2Q9Y6L7 1015 aa26.42■■□□□ 1.82
CPSF4-204ENST00000436336 VWA5AO00534 786 aa26.41■■□□□ 1.82
CPSF4-204ENST00000436336 ICAM1P05362 532 aa26.41■■□□□ 1.82
CPSF4-204ENST00000436336 NR5A1Q13285 461 aa26.41■■□□□ 1.82
CPSF4-204ENST00000436336 FOXD4L6Q3SYB3 417 aaPredicted RBP26.41■■□□□ 1.82
CPSF4-204ENST00000436336 USH1GQ495M9 461 aa26.41■■□□□ 1.82
CPSF4-204ENST00000436336 FOXD4L3Q6VB84 417 aaPredicted RBP26.41■■□□□ 1.82
CPSF4-204ENST00000436336 BICD2Q8TD16 824 aa26.41■■□□□ 1.82
CPSF4-204ENST00000436336 MS4A4AQ96JQ5 239 aa26.41■■□□□ 1.82
CPSF4-204ENST00000436336 RBBP6Q7Z6E9 1792 aaKnown RBP26.41■■□□□ 1.82
CPSF4-204ENST00000436336 ADCY7P51828 1080 aa26.4■■□□□ 1.82
CPSF4-204ENST00000436336 RGMBQ6NW40 437 aa26.4■■□□□ 1.82
CPSF4-204ENST00000436336 FAM173BQ6P4H8 233 aa26.4■■□□□ 1.82
CPSF4-204ENST00000436336 GLT8D2Q9H1C3 349 aa26.4■■□□□ 1.82
CPSF4-204ENST00000436336 ZNF536O15090 1300 aa26.4■■□□□ 1.82
CPSF4-204ENST00000436336 SPDYE16A6NNV3 312 aaPredicted RBP26.39■■□□□ 1.82
CPSF4-204ENST00000436336 M0R2N6 131 aa26.39■■□□□ 1.82
CPSF4-204ENST00000436336 ZNF157P51786 506 aaPredicted RBP26.39■■□□□ 1.82
CPSF4-204ENST00000436336 GPAT2Q6NUI2 795 aa26.39■■□□□ 1.82
CPSF4-204ENST00000436336 TNFRSF25Q93038 417 aa26.39■■□□□ 1.82
CPSF4-204ENST00000436336 RIC8AQ9NPQ8 531 aa26.39■■□□□ 1.82
CPSF4-204ENST00000436336 TMEM88BA6NKF7 163 aa26.39■■□□□ 1.81
CPSF4-204ENST00000436336 ABCB11O95342 1321 aa26.39■■□□□ 1.81
CPSF4-204ENST00000436336 DNM1Q05193 864 aaKnown RBP26.39■■□□□ 1.81
CPSF4-204ENST00000436336 MKRN3Q13064 507 aaKnown RBP26.39■■□□□ 1.81
CPSF4-204ENST00000436336 MYSM1Q5VVJ2 828 aa26.39■■□□□ 1.81
CPSF4-204ENST00000436336 RASAL3Q86YV0 1011 aa26.39■■□□□ 1.81
CPSF4-204ENST00000436336 CUL5Q93034 780 aa26.39■■□□□ 1.81
CPSF4-204ENST00000436336 MRPL12P52815 198 aaKnown RBP26.38■■□□□ 1.81
CPSF4-204ENST00000436336 OAZ1P54368 228 aa26.38■■□□□ 1.81
CPSF4-204ENST00000436336 IRX3P78415 501 aaPredicted RBP26.38■■□□□ 1.81
CPSF4-204ENST00000436336 ATL3Q6DD88 541 aa26.38■■□□□ 1.81
CPSF4-204ENST00000436336 REPS2Q8NFH8 660 aa26.38■■□□□ 1.81
CPSF4-204ENST00000436336 PSTPIP2Q9H939 334 aa26.38■■□□□ 1.81
CPSF4-204ENST00000436336 CCPG1Q9ULG6 757 aa26.38■■□□□ 1.81
CPSF4-204ENST00000436336 CCL15-CCL14A0A0B4J2E2 113 aa26.37■■□□□ 1.81
CPSF4-204ENST00000436336 ADAMTS3O15072 1205 aa26.37■■□□□ 1.81
CPSF4-204ENST00000436336 OSBPP22059 807 aa26.37■■□□□ 1.81
CPSF4-204ENST00000436336 CCL15Q16663 113 aa26.37■■□□□ 1.81
CPSF4-204ENST00000436336 CHAMP1Q96JM3 812 aa26.37■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms