RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 PAK2Q13177 524 aa5.43□□□□□ -1.54
HMGB1-204ENST00000399489 MPP2Q14168 576 aa5.43□□□□□ -1.54
HMGB1-204ENST00000399489 SNX17Q15036 470 aa5.43□□□□□ -1.54
HMGB1-204ENST00000399489 KCNA10Q16322 511 aa5.43□□□□□ -1.54
HMGB1-204ENST00000399489 LONRF3Q496Y0 759 aa5.43□□□□□ -1.54
HMGB1-204ENST00000399489 TMEM132EQ6IEE7 984 aa5.43□□□□□ -1.54
HMGB1-204ENST00000399489 ANKS4BQ8N8V4 417 aa5.43□□□□□ -1.54
HMGB1-204ENST00000399489 CCDC136Q96JN2 1154 aa5.43□□□□□ -1.54
HMGB1-204ENST00000399489 IER2Q9BTL4 223 aa5.43□□□□□ -1.54
HMGB1-204ENST00000399489 RNF32Q9H0A6 362 aa5.43□□□□□ -1.54
HMGB1-204ENST00000399489 ZNF408Q9H9D4 720 aa5.43□□□□□ -1.54
HMGB1-204ENST00000399489 GGT7Q9UJ14 662 aa5.43□□□□□ -1.54
HMGB1-204ENST00000399489 PRR36Q9H6K5 1346 aa5.42□□□□□ -1.54
HMGB1-204ENST00000399489 HTR3BO95264 441 aa5.42□□□□□ -1.54
HMGB1-204ENST00000399489 MED14OSP0DP75 135 aa5.42□□□□□ -1.54
HMGB1-204ENST00000399489 RASA3Q14644 834 aa5.42□□□□□ -1.54
HMGB1-204ENST00000399489 NR0B2Q15466 257 aa5.42□□□□□ -1.54
HMGB1-204ENST00000399489 TMTC2Q8N394 836 aa5.42□□□□□ -1.54
HMGB1-204ENST00000399489 BAHD1Q8TBE0 780 aaPredicted RBP5.42□□□□□ -1.54
HMGB1-204ENST00000399489 ENOX1Q8TC92 643 aaKnown RBP5.42□□□□□ -1.54
HMGB1-204ENST00000399489 C8orf48Q96LL4 319 aa5.42□□□□□ -1.54
HMGB1-204ENST00000399489 SLKQ9H2G2 1235 aaPredicted RBP5.42□□□□□ -1.54
HMGB1-204ENST00000399489 SNTG2Q9NY99 539 aa5.42□□□□□ -1.54
HMGB1-204ENST00000399489 THRAP3Q9Y2W1 955 aaKnown RBP5.42□□□□□ -1.54
HMGB1-204ENST00000399489 MINDY4BA8MYZ0 360 aa5.41□□□□□ -1.54
HMGB1-204ENST00000399489 CHURC1-FNTBB4DL54 471 aa5.41□□□□□ -1.54
HMGB1-204ENST00000399489 F6X3S4 739 aa5.41□□□□□ -1.54
HMGB1-204ENST00000399489 GRIN3BO60391 1043 aa5.41□□□□□ -1.54
HMGB1-204ENST00000399489 TRHRP34981 398 aaPredicted RBP5.41□□□□□ -1.54
HMGB1-204ENST00000399489 PDE6BP35913 854 aa5.41□□□□□ -1.54
HMGB1-204ENST00000399489 CWF19L2Q2TBE0 894 aaKnown RBP5.41□□□□□ -1.54
HMGB1-204ENST00000399489 CILP2Q8IUL8 1156 aa5.41□□□□□ -1.54
HMGB1-204ENST00000399489 PRPF38AQ8NAV1 312 aaKnown RBP5.41□□□□□ -1.54
HMGB1-204ENST00000399489 GOLM1Q8NBJ4 401 aa5.41□□□□□ -1.54
HMGB1-204ENST00000399489 RASGRP4Q8TDF6 673 aa5.41□□□□□ -1.54
HMGB1-204ENST00000399489 RHOVQ96L33 236 aa5.41□□□□□ -1.54
HMGB1-204ENST00000399489 GEMIN8Q9NWZ8 242 aaKnown RBP5.41□□□□□ -1.54
HMGB1-204ENST00000399489 GPR160Q9UJ42 338 aa5.41□□□□□ -1.54
HMGB1-204ENST00000399489 ROBO2Q9HCK4 1378 aa5.41□□□□□ -1.54
HMGB1-204ENST00000399489 ETV2O00321 342 aaPredicted RBP5.4□□□□□ -1.54
HMGB1-204ENST00000399489 NUAK1O60285 661 aa5.4□□□□□ -1.54
HMGB1-204ENST00000399489 LRRN2O75325 713 aa5.4□□□□□ -1.54
HMGB1-204ENST00000399489 FAM160A1Q05DH4 1040 aa5.4□□□□□ -1.54
HMGB1-204ENST00000399489 ZFYVE27Q5T4F4 411 aa5.4□□□□□ -1.54
HMGB1-204ENST00000399489 RNF111Q6ZNA4 994 aa5.4□□□□□ -1.54
HMGB1-204ENST00000399489 C1QL4Q86Z23 238 aa5.4□□□□□ -1.54
HMGB1-204ENST00000399489 KIF2CQ99661 725 aa5.4□□□□□ -1.54
HMGB1-204ENST00000399489 KANSL2Q9H9L4 492 aa5.4□□□□□ -1.54
HMGB1-204ENST00000399489 CD320Q9NPF0 282 aa5.4□□□□□ -1.54
HMGB1-204ENST00000399489 FANCLQ9NW38 375 aa5.4□□□□□ -1.54
HMGB1-204ENST00000399489 SIRPGQ9P1W8 387 aa5.4□□□□□ -1.54
HMGB1-204ENST00000399489 SMG5Q9UPR3 1016 aaKnown RBP5.4□□□□□ -1.54
HMGB1-204ENST00000399489 SEMA7AO75326 666 aa5.4□□□□□ -1.55
HMGB1-204ENST00000399489 RAG1P15918 1043 aa5.4□□□□□ -1.55
HMGB1-204ENST00000399489 SLC14A2Q15849 920 aa5.4□□□□□ -1.55
HMGB1-204ENST00000399489 CCSAPQ6IQ19 270 aaPredicted RBP5.4□□□□□ -1.55
HMGB1-204ENST00000399489 REC114Q7Z4M0 266 aa5.4□□□□□ -1.55
HMGB1-204ENST00000399489 KIAA0907Q7Z7F0 614 aaPredicted RBP5.4□□□□□ -1.55
HMGB1-204ENST00000399489 FERMT3Q86UX7 667 aa5.4□□□□□ -1.55
HMGB1-204ENST00000399489 AMIGO3Q86WK7 504 aa5.4□□□□□ -1.55
HMGB1-204ENST00000399489 SH3TC2Q8TF17 1288 aa5.4□□□□□ -1.55
HMGB1-204ENST00000399489 INTS4Q96HW7 963 aaKnown RBP5.4□□□□□ -1.55
HMGB1-204ENST00000399489 DEPDC7Q96QD5 511 aa5.4□□□□□ -1.55
HMGB1-204ENST00000399489 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.4□□□□□ -1.55
HMGB1-204ENST00000399489 C19orf44Q9H6X5 657 aa5.4□□□□□ -1.55
HMGB1-204ENST00000399489 ZMYM5Q9UJ78 669 aa5.4□□□□□ -1.55
HMGB1-204ENST00000399489 YBX2Q9Y2T7 364 aaKnown RBP5.4□□□□□ -1.55
HMGB1-204ENST00000399489 EID1Q9Y6B2 187 aa5.4□□□□□ -1.55
HMGB1-204ENST00000399489 PEX10O60683 326 aa5.39□□□□□ -1.55
HMGB1-204ENST00000399489 NMIQ13287 307 aaPredicted RBP5.39□□□□□ -1.55
HMGB1-204ENST00000399489 UBE4AQ14139 1066 aa5.39□□□□□ -1.55
HMGB1-204ENST00000399489 ARSHQ5FYA8 562 aa5.39□□□□□ -1.55
HMGB1-204ENST00000399489 C11orf96Q7Z7L8 435 aa5.39□□□□□ -1.55
HMGB1-204ENST00000399489 ZNF605Q86T29 641 aa5.39□□□□□ -1.55
HMGB1-204ENST00000399489 RELTQ969Z4 430 aa5.39□□□□□ -1.55
HMGB1-204ENST00000399489 PLCD4Q9BRC7 762 aa5.39□□□□□ -1.55
HMGB1-204ENST00000399489 POLR3KQ9Y2Y1 108 aaPredicted RBP5.39□□□□□ -1.55
HMGB1-204ENST00000399489 SUPT16HQ9Y5B9 1047 aaKnown RBP5.39□□□□□ -1.55
HMGB1-204ENST00000399489 FAM221BA6H8Z2 402 aa5.38□□□□□ -1.55
HMGB1-204ENST00000399489 RFXAPO00287 272 aa5.38□□□□□ -1.55
HMGB1-204ENST00000399489 RGS13O14921 159 aa5.38□□□□□ -1.55
HMGB1-204ENST00000399489 KRT1P04264 644 aa5.38□□□□□ -1.55
HMGB1-204ENST00000399489 SSBP05455 408 aaKnown RBP eCLIP5.38□□□□□ -1.55
HMGB1-204ENST00000399489 VIL1P09327 827 aaKnown RBP5.38□□□□□ -1.55
HMGB1-204ENST00000399489 RPL10P27635 214 aaKnown RBP5.38□□□□□ -1.55
HMGB1-204ENST00000399489 PCBP3P57721 371 aaKnown RBP5.38□□□□□ -1.55
HMGB1-204ENST00000399489 EVA1CP58658 441 aa5.38□□□□□ -1.55
HMGB1-204ENST00000399489 TEKQ02763 1124 aa5.38□□□□□ -1.55
HMGB1-204ENST00000399489 MAP9Q49MG5 647 aa5.38□□□□□ -1.55
HMGB1-204ENST00000399489 FAM196AQ6ZSG2 479 aa5.38□□□□□ -1.55
HMGB1-204ENST00000399489 LCNL1Q6ZST4 164 aa5.38□□□□□ -1.55
HMGB1-204ENST00000399489 SYTL5Q8TDW5 730 aaPredicted RBP5.38□□□□□ -1.55
HMGB1-204ENST00000399489 TRIM55Q9BYV6 548 aa5.38□□□□□ -1.55
HMGB1-204ENST00000399489 GNL3LQ9NVN8 582 aaKnown RBP5.38□□□□□ -1.55
HMGB1-204ENST00000399489 PNMA2Q9UL42 364 aa5.38□□□□□ -1.55
HMGB1-204ENST00000399489 TLR3O15455 904 aaKnown RBP5.37□□□□□ -1.55
HMGB1-204ENST00000399489 KLF4O43474 513 aa5.37□□□□□ -1.55
HMGB1-204ENST00000399489 ENDOUP21128 410 aaKnown RBP5.37□□□□□ -1.55
HMGB1-204ENST00000399489 GYS2P54840 703 aa5.37□□□□□ -1.55
HMGB1-204ENST00000399489 LINC00310P59036 64 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms