RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 C2orf54Q08AI8 447 aa17.99■□□□□ 0.47
PCDH1-203ENST00000394536 TPTE2Q6XPS3 522 aa17.99■□□□□ 0.47
PCDH1-203ENST00000394536 MECOMQ03112 1051 aa17.99■□□□□ 0.47
PCDH1-203ENST00000394536 LRRC41Q15345 812 aa17.99■□□□□ 0.47
PCDH1-203ENST00000394536 C8orf74Q6P047 294 aa17.99■□□□□ 0.47
PCDH1-203ENST00000394536 PNKPQ96T60 521 aa17.99■□□□□ 0.47
PCDH1-203ENST00000394536 RRP15Q9Y3B9 282 aaKnown RBP17.99■□□□□ 0.47
PCDH1-203ENST00000394536 JCADQ9P266 1359 aa17.99■□□□□ 0.47
PCDH1-203ENST00000394536 ZNF76P36508 570 aa17.98■□□□□ 0.47
PCDH1-203ENST00000394536 DIXDC1Q155Q3 683 aa17.98■□□□□ 0.47
PCDH1-203ENST00000394536 MB21D1Q8N884 522 aa17.98■□□□□ 0.47
PCDH1-203ENST00000394536 FUT8Q9BYC5 575 aa17.98■□□□□ 0.47
PCDH1-203ENST00000394536 A0A087X0B3 334 aa17.98■□□□□ 0.47
PCDH1-203ENST00000394536 WTIPA6NIX2 430 aaPredicted RBP17.98■□□□□ 0.47
PCDH1-203ENST00000394536 CNNM4Q6P4Q7 775 aa17.98■□□□□ 0.47
PCDH1-203ENST00000394536 SLC44A5Q8NCS7 719 aa17.98■□□□□ 0.47
PCDH1-203ENST00000394536 SNX29Q8TEQ0 813 aa17.98■□□□□ 0.47
PCDH1-203ENST00000394536 RIN2Q8WYP3 895 aaPredicted RBP17.98■□□□□ 0.47
PCDH1-203ENST00000394536 HPS3Q969F9 1004 aa17.98■□□□□ 0.47
PCDH1-203ENST00000394536 NUP58Q9BVL2 599 aa17.98■□□□□ 0.47
PCDH1-203ENST00000394536 XRN1Q8IZH2 1706 aaKnown RBP17.98■□□□□ 0.47
PCDH1-203ENST00000394536 TRIM66O15016 1216 aa17.98■□□□□ 0.47
PCDH1-203ENST00000394536 ZNF18P17022 549 aa17.98■□□□□ 0.47
PCDH1-203ENST00000394536 DPYDQ12882 1025 aa17.98■□□□□ 0.47
PCDH1-203ENST00000394536 KRT26Q7Z3Y9 468 aa17.98■□□□□ 0.47
PCDH1-203ENST00000394536 TEX11Q8IYF3 940 aa17.98■□□□□ 0.47
PCDH1-203ENST00000394536 ERVV-1B6SEH8 477 aa17.97■□□□□ 0.47
PCDH1-203ENST00000394536 KCTD16Q68DU8 428 aa17.97■□□□□ 0.47
PCDH1-203ENST00000394536 ATP1A2P50993 1020 aa17.97■□□□□ 0.47
PCDH1-203ENST00000394536 TTC31Q49AM3 519 aaPredicted RBP17.97■□□□□ 0.47
PCDH1-203ENST00000394536 CFAP58Q5T655 872 aa17.97■□□□□ 0.47
PCDH1-203ENST00000394536 FAM71BQ8TC56 605 aa17.97■□□□□ 0.47
PCDH1-203ENST00000394536 NHEJ1Q9H9Q4 299 aaPredicted RBP17.97■□□□□ 0.47
PCDH1-203ENST00000394536 DISC1Q9NRI5 854 aa17.97■□□□□ 0.47
PCDH1-203ENST00000394536 MYO1CO00159 1063 aa17.97■□□□□ 0.47
PCDH1-203ENST00000394536 PLCG1P19174 1290 aa17.97■□□□□ 0.47
PCDH1-203ENST00000394536 HPDP32754 393 aaPredicted RBP17.97■□□□□ 0.47
PCDH1-203ENST00000394536 UBE4AQ14139 1066 aa17.97■□□□□ 0.47
PCDH1-203ENST00000394536 STAG2Q8N3U4 1231 aa17.97■□□□□ 0.47
PCDH1-203ENST00000394536 RPGRQ92834 1020 aaKnown RBP17.97■□□□□ 0.47
PCDH1-203ENST00000394536 GOPCQ9HD26 462 aa17.97■□□□□ 0.47
PCDH1-203ENST00000394536 PPP1R3GB7ZBB8 358 aa17.96■□□□□ 0.47
PCDH1-203ENST00000394536 OPA1O60313 960 aa17.96■□□□□ 0.47
PCDH1-203ENST00000394536 ATP1A1P05023 1023 aaKnown RBP17.96■□□□□ 0.47
PCDH1-203ENST00000394536 GUCY2FP51841 1108 aa17.96■□□□□ 0.47
PCDH1-203ENST00000394536 MNAT1P51948 309 aa17.96■□□□□ 0.47
PCDH1-203ENST00000394536 KLHL7Q8IXQ5 586 aa17.96■□□□□ 0.47
PCDH1-203ENST00000394536 PHF20Q9BVI0 1012 aa17.96■□□□□ 0.47
PCDH1-203ENST00000394536 HSD3B7Q9H2F3 369 aa17.96■□□□□ 0.47
PCDH1-203ENST00000394536 SF3A3Q12874 501 aaKnown RBP eCLIP17.96■□□□□ 0.47
PCDH1-203ENST00000394536 RASGRP2Q7LDG7 609 aa17.96■□□□□ 0.47
PCDH1-203ENST00000394536 PCDHA4Q9UN74 947 aa17.96■□□□□ 0.47
PCDH1-203ENST00000394536 FAM208AQ9UK61 1670 aaKnown RBP17.96■□□□□ 0.47
PCDH1-203ENST00000394536 NWD1Q149M9 1564 aa17.96■□□□□ 0.47
PCDH1-203ENST00000394536 OVOS2A0A0G2JMS6 1433 aa17.96■□□□□ 0.47
PCDH1-203ENST00000394536 GNPATO15228 680 aa17.96■□□□□ 0.47
PCDH1-203ENST00000394536 ZNF185O15231 689 aa17.96■□□□□ 0.47
PCDH1-203ENST00000394536 OR52Z1P0C646 297 aa17.96■□□□□ 0.47
PCDH1-203ENST00000394536 USP17L2Q6R6M4 530 aa17.96■□□□□ 0.47
PCDH1-203ENST00000394536 TAX1BP1Q86VP1 789 aa17.96■□□□□ 0.47
PCDH1-203ENST00000394536 SMCR8Q8TEV9 937 aaPredicted RBP17.96■□□□□ 0.47
PCDH1-203ENST00000394536 CELF1Q92879 486 aaKnown RBP17.96■□□□□ 0.47
PCDH1-203ENST00000394536 AGPAT5Q9NUQ2 364 aa17.96■□□□□ 0.47
PCDH1-203ENST00000394536 ARPP21Q9UBL0 812 aaPredicted RBP17.96■□□□□ 0.47
PCDH1-203ENST00000394536 FRMPD2Q68DX3 1309 aaPredicted RBP17.96■□□□□ 0.46
PCDH1-203ENST00000394536 TRAPPC10P48553 1259 aa17.95■□□□□ 0.46
PCDH1-203ENST00000394536 RASSF7Q02833 373 aa17.95■□□□□ 0.46
PCDH1-203ENST00000394536 REXO1Q8N1G1 1221 aaKnown RBP17.95■□□□□ 0.46
PCDH1-203ENST00000394536 NDUFAB1O14561 156 aa17.95■□□□□ 0.46
PCDH1-203ENST00000394536 ATP2C1P98194 919 aaPredicted RBP17.95■□□□□ 0.46
PCDH1-203ENST00000394536 ADGRA1Q86SQ6 560 aa17.95■□□□□ 0.46
PCDH1-203ENST00000394536 P2RX5Q93086 422 aa17.95■□□□□ 0.46
PCDH1-203ENST00000394536 CCDC113Q9H0I3 377 aa17.95■□□□□ 0.46
PCDH1-203ENST00000394536 MYO1AQ9UBC5 1043 aa17.95■□□□□ 0.46
PCDH1-203ENST00000394536 TCRBV5S4A2TA0A5A2 114 aa17.95■□□□□ 0.46
PCDH1-203ENST00000394536 H3BQF6 201 aa17.95■□□□□ 0.46
PCDH1-203ENST00000394536 MOCS3O95396 460 aa17.95■□□□□ 0.46
PCDH1-203ENST00000394536 EEF1GP26641 437 aaKnown RBP17.95■□□□□ 0.46
PCDH1-203ENST00000394536 CDR1P51861 262 aa17.95■□□□□ 0.46
PCDH1-203ENST00000394536 ERVK-24P63145 666 aa17.95■□□□□ 0.46
PCDH1-203ENST00000394536 IFFO1Q0D2I5 559 aa17.95■□□□□ 0.46
PCDH1-203ENST00000394536 CALCRLQ16602 461 aa17.95■□□□□ 0.46
PCDH1-203ENST00000394536 DCP1AQ9NPI6 582 aaPredicted RBP17.95■□□□□ 0.46
PCDH1-203ENST00000394536 ABL1P00519 1130 aa17.94■□□□□ 0.46
PCDH1-203ENST00000394536 RFC4P35249 363 aa17.94■□□□□ 0.46
PCDH1-203ENST00000394536 HERC4Q5GLZ8 1057 aaPredicted RBP17.94■□□□□ 0.46
PCDH1-203ENST00000394536 CT47A1Q5JQC4 288 aaPredicted RBP17.94■□□□□ 0.46
PCDH1-203ENST00000394536 GPR101Q96P66 508 aaPredicted RBP17.94■□□□□ 0.46
PCDH1-203ENST00000394536 MMS19Q96T76 1030 aa17.94■□□□□ 0.46
PCDH1-203ENST00000394536 UBR1Q8IWV7 1749 aa17.94■□□□□ 0.46
PCDH1-203ENST00000394536 CCT5P48643 541 aa17.94■□□□□ 0.46
PCDH1-203ENST00000394536 MDM2Q00987 491 aaPredicted RBP17.94■□□□□ 0.46
PCDH1-203ENST00000394536 BCAS4Q8TDM0 211 aa17.94■□□□□ 0.46
PCDH1-203ENST00000394536 CCDC43Q96MW1 224 aaKnown RBP17.94■□□□□ 0.46
PCDH1-203ENST00000394536 EYA3Q99504 573 aa17.94■□□□□ 0.46
PCDH1-203ENST00000394536 MED4Q9NPJ6 270 aa17.94■□□□□ 0.46
PCDH1-203ENST00000394536 RDXP35241 583 aaKnown RBP17.94■□□□□ 0.46
PCDH1-203ENST00000394536 KRT25Q7Z3Z0 450 aa17.94■□□□□ 0.46
PCDH1-203ENST00000394536 TSGA10Q9BZW7 698 aa17.94■□□□□ 0.46
PCDH1-203ENST00000394536 ANKRD2Q9GZV1 360 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms