RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 HCN4Q9Y3Q4 1203 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 ATP6V0A2Q9Y487 856 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 PLEKHG2Q9H7P9 1386 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 CDC42BPGQ6DT37 1551 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 ADCY3O60266 1144 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 AMHP03971 560 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 Q6ZUG5 572 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 FILIP1Q7Z7B0 1213 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 SNX29Q8TEQ0 813 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 SCAF8Q9UPN6 1271 aaKnown RBP10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 CPS1P31327 1500 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 LRG1P02750 347 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 SRGAP2CP0DJJ0 459 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 SFPQP23246 707 aaKnown RBP eCLIP10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 AMPD2Q01433 879 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 NR1H3Q13133 447 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 CACTINQ8WUQ7 758 aaKnown RBP10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 PGBD4Q96DM1 585 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 TMEM169Q96HH4 297 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 C1orf167Q5SNV9 1468 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 ARHGEF12Q9NZN5 1544 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 TADA2AO75478 443 aa10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 HEXIM1O94992 359 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 NKX1-1Q15270 411 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 AGBL3Q8NEM8 1001 aa10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 ANKRD36BP1Q96IX9 119 aa10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 RABGAP1Q9Y3P9 1069 aa10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 GCNT3O95395 438 aa10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 FOSP01100 380 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 CIITAP33076 1130 aa10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 ALDH7A1P49419 539 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 NUCB1Q02818 461 aa10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 NEDD9Q14511 834 aa10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 STRIP1Q5VSL9 837 aa10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 PPP1R14CQ8TAE6 165 aa10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 PTCH1Q13635 1447 aa10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 SSH2Q76I76 1423 aa10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 EXOC3O60645 756 aa10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 PRPF40AO75400 957 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 KPNA1P52294 538 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 IER5Q5VY09 327 aa10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 GDAP1Q8TB36 358 aa10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 SEPT8Q92599 483 aa10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 SRPK1Q96SB4 655 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 MRPL44Q9H9J2 332 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 PSMA7O14818 248 aa10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 CCDC192P0DO97 292 aa10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 TXNP10599 105 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 ST8SIA6P61647 398 aa10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 MUM1L1Q5H9M0 696 aa10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 ERO1BQ86YB8 467 aa10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 NUP62CLQ9H1M0 184 aa10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 RBM8AQ9Y5S9 174 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 PDE8BO95263 885 aa10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 YEATS4O95619 227 aa10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 SFSWAPQ12872 951 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 TAF3Q5VWG9 929 aa10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 NDUFAF2Q8N183 169 aa10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 GCOM2Q9BZD3 368 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-202ENST00000381753 NDUFV1P49821 464 aa10.21□□□□□ -0.77
LIMCH1-202ENST00000381753 KIF23Q02241 960 aaPredicted RBP10.21□□□□□ -0.77
LIMCH1-202ENST00000381753 ZNF771Q7L3S4 317 aaPredicted RBP10.21□□□□□ -0.77
LIMCH1-202ENST00000381753 GLYCTKQ8IVS8 523 aa10.21□□□□□ -0.77
LIMCH1-202ENST00000381753 SHCBP1Q8NEM2 672 aa10.21□□□□□ -0.77
LIMCH1-202ENST00000381753 FAM167AQ96KS9 214 aa10.21□□□□□ -0.77
LIMCH1-202ENST00000381753 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.21□□□□□ -0.77
LIMCH1-202ENST00000381753 TTC41PQ6P2S7 1318 aa10.21□□□□□ -0.77
LIMCH1-202ENST00000381753 TRAPPC3O43617 180 aa10.21□□□□□ -0.77
LIMCH1-202ENST00000381753 HSPD1P10809 573 aaKnown RBP10.21□□□□□ -0.77
LIMCH1-202ENST00000381753 SLC16A2P36021 539 aa10.21□□□□□ -0.77
LIMCH1-202ENST00000381753 ZNF174Q15697 407 aa10.21□□□□□ -0.77
LIMCH1-202ENST00000381753 PAN2Q504Q3 1202 aaKnown RBP10.21□□□□□ -0.77
LIMCH1-202ENST00000381753 FAM161BQ96MY7 647 aa10.21□□□□□ -0.77
LIMCH1-202ENST00000381753 FAM204AQ9H8W3 233 aa10.21□□□□□ -0.77
LIMCH1-202ENST00000381753 TECPR2O15040 1411 aa10.21□□□□□ -0.77
LIMCH1-202ENST00000381753 FARP2O94887 1054 aaPredicted RBP10.21□□□□□ -0.78
LIMCH1-202ENST00000381753 RAD51AP2Q09MP3 1159 aa10.21□□□□□ -0.78
LIMCH1-202ENST00000381753 ACCSLQ4AC99 568 aa10.21□□□□□ -0.78
LIMCH1-202ENST00000381753 NSUN6Q8TEA1 469 aaKnown RBP10.21□□□□□ -0.78
LIMCH1-202ENST00000381753 TMEM87BQ96K49 555 aa10.21□□□□□ -0.78
LIMCH1-202ENST00000381753 CEP170P1Q96L14 293 aa10.21□□□□□ -0.78
LIMCH1-202ENST00000381753 EVA1BQ9NVM1 165 aa10.21□□□□□ -0.78
LIMCH1-202ENST00000381753 ZNF70Q9UC06 446 aaPredicted RBP10.21□□□□□ -0.78
LIMCH1-202ENST00000381753 LRWD1Q9UFC0 647 aa10.21□□□□□ -0.78
LIMCH1-202ENST00000381753 MAGED2Q9UNF1 606 aaPredicted RBP10.21□□□□□ -0.78
LIMCH1-202ENST00000381753 CYBBP04839 570 aa10.21□□□□□ -0.78
LIMCH1-202ENST00000381753 TRIM27P14373 513 aa10.21□□□□□ -0.78
LIMCH1-202ENST00000381753 GBP1P32455 592 aa10.21□□□□□ -0.78
LIMCH1-202ENST00000381753 COG2Q14746 738 aa10.21□□□□□ -0.78
LIMCH1-202ENST00000381753 TCP11Q8WWU5 503 aa10.21□□□□□ -0.78
LIMCH1-202ENST00000381753 CGNQ9P2M7 1197 aaKnown RBP10.21□□□□□ -0.78
LIMCH1-202ENST00000381753 SLC25A27O95847 323 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 AAK1Q2M2I8 961 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 SLFN12Q8IYM2 578 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 MMTAG2Q9BU76 263 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 LIMCH1Q9UPQ0 1083 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 KLRF2D3W0D1 207 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 TNFAIP2Q03169 654 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 MYO1EQ12965 1108 aa10.2□□□□□ -0.78
LIMCH1-202ENST00000381753 PAK2Q13177 524 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms