RNA–Protein interactions for RNA: ENST00000360001.10

SDF4-202, Transcript of stromal cell derived factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SDF4, Length 1,956 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-202ENST00000360001 TRIM75PA6NK02 468 aa26.53■■□□□ 1.84
SDF4-202ENST00000360001 MARCKSP29966 332 aaPredicted RBP26.53■■□□□ 1.84
SDF4-202ENST00000360001 TRAPPC10P48553 1259 aa26.53■■□□□ 1.84
SDF4-202ENST00000360001 ZSCAN23Q3MJ62 389 aa26.53■■□□□ 1.84
SDF4-202ENST00000360001 EAPPQ56P03 285 aaPredicted RBP26.53■■□□□ 1.84
SDF4-202ENST00000360001 ADALQ6DHV7 355 aa26.53■■□□□ 1.84
SDF4-202ENST00000360001 CHURC1Q8WUH1 139 aa26.53■■□□□ 1.84
SDF4-202ENST00000360001 ADCY7P51828 1080 aa26.53■■□□□ 1.84
SDF4-202ENST00000360001 MTMR2Q13614 643 aa26.53■■□□□ 1.84
SDF4-202ENST00000360001 AXDND1Q5T1B0 1012 aaPredicted RBP26.53■■□□□ 1.84
SDF4-202ENST00000360001 AS3MTQ9HBK9 375 aa26.53■■□□□ 1.84
SDF4-202ENST00000360001 FEM1BQ9UK73 627 aa26.53■■□□□ 1.84
SDF4-202ENST00000360001 CCDC194A0A1B0GVG4 234 aa26.52■■□□□ 1.84
SDF4-202ENST00000360001 SPP2Q13103 211 aa26.52■■□□□ 1.84
SDF4-202ENST00000360001 TTC38Q5R3I4 469 aa26.52■■□□□ 1.84
SDF4-202ENST00000360001 PNMA8AQ86V59 439 aaPredicted RBP26.52■■□□□ 1.84
SDF4-202ENST00000360001 FAM160B2Q86V87 743 aa26.52■■□□□ 1.84
SDF4-202ENST00000360001 ZNF280CQ8ND82 737 aa26.52■■□□□ 1.84
SDF4-202ENST00000360001 CDCA5Q96FF9 252 aa26.52■■□□□ 1.84
SDF4-202ENST00000360001 PCDHA1Q9Y5I3 950 aa26.52■■□□□ 1.84
SDF4-202ENST00000360001 A0A1W2PQ27 194 aa26.51■■□□□ 1.83
SDF4-202ENST00000360001 A0A1W2PQ64 194 aa26.51■■□□□ 1.83
SDF4-202ENST00000360001 A0A1W2PQD8 194 aa26.51■■□□□ 1.83
SDF4-202ENST00000360001 WDR46O15213 610 aaKnown RBP26.51■■□□□ 1.83
SDF4-202ENST00000360001 DGKZQ13574 1117 aa26.51■■□□□ 1.83
SDF4-202ENST00000360001 JMYQ8N9B5 988 aa26.51■■□□□ 1.83
SDF4-202ENST00000360001 SYAP1Q96A49 352 aaPredicted RBP26.51■■□□□ 1.83
SDF4-202ENST00000360001 AMNQ9BXJ7 453 aa26.51■■□□□ 1.83
SDF4-202ENST00000360001 RIC8AQ9NPQ8 531 aa26.51■■□□□ 1.83
SDF4-202ENST00000360001 EMILIN3Q9NT22 766 aa26.51■■□□□ 1.83
SDF4-202ENST00000360001 PPP1R3FQ6ZSY5 799 aaPredicted RBP26.51■■□□□ 1.83
SDF4-202ENST00000360001 CCAR1Q8IX12 1150 aaKnown RBP26.51■■□□□ 1.83
SDF4-202ENST00000360001 REXO1Q8N1G1 1221 aaKnown RBP26.51■■□□□ 1.83
SDF4-202ENST00000360001 FBXO28Q9NVF7 368 aa26.51■■□□□ 1.83
SDF4-202ENST00000360001 CEP131Q9UPN4 1083 aa26.51■■□□□ 1.83
SDF4-202ENST00000360001 ZHX2Q9Y6X8 837 aa26.51■■□□□ 1.83
SDF4-202ENST00000360001 OTOFQ9HC10 1997 aa26.51■■□□□ 1.83
SDF4-202ENST00000360001 PPP1R12BO60237 982 aaPredicted RBP26.5■■□□□ 1.83
SDF4-202ENST00000360001 USP14P54578 494 aa26.5■■□□□ 1.83
SDF4-202ENST00000360001 BACE1P56817 501 aa26.5■■□□□ 1.83
SDF4-202ENST00000360001 KRT25Q7Z3Z0 450 aa26.5■■□□□ 1.83
SDF4-202ENST00000360001 FBXO11Q86XK2 927 aa26.5■■□□□ 1.83
SDF4-202ENST00000360001 GOLPH3LQ9H4A5 285 aa26.5■■□□□ 1.83
SDF4-202ENST00000360001 MORC2Q9Y6X9 1032 aaPredicted RBP26.5■■□□□ 1.83
SDF4-202ENST00000360001 MAP3K9P80192 1104 aa26.49■■□□□ 1.83
SDF4-202ENST00000360001 KIFC2Q96AC6 838 aa26.49■■□□□ 1.83
SDF4-202ENST00000360001 RANBP17Q9H2T7 1088 aaKnown RBP26.49■■□□□ 1.83
SDF4-202ENST00000360001 BIN2Q9UBW5 565 aaPredicted RBP26.49■■□□□ 1.83
SDF4-202ENST00000360001 VGLL4Q14135 290 aa26.49■■□□□ 1.83
SDF4-202ENST00000360001 CCDC183Q5T5S1 534 aa26.49■■□□□ 1.83
SDF4-202ENST00000360001 SNCAIPQ9Y6H5 919 aa26.49■■□□□ 1.83
SDF4-202ENST00000360001 NR1I2O75469 434 aa26.48■■□□□ 1.83
SDF4-202ENST00000360001 VCAM1P19320 739 aa26.48■■□□□ 1.83
SDF4-202ENST00000360001 ZNF174Q15697 407 aa26.48■■□□□ 1.83
SDF4-202ENST00000360001 INF2Q27J81 1249 aa26.48■■□□□ 1.83
SDF4-202ENST00000360001 CUL5Q93034 780 aa26.48■■□□□ 1.83
SDF4-202ENST00000360001 TMEM260Q9NX78 707 aa26.48■■□□□ 1.83
SDF4-202ENST00000360001 DACT1Q9NYF0 836 aa26.48■■□□□ 1.83
SDF4-202ENST00000360001 CLK2P49760 499 aaKnown RBP26.47■■□□□ 1.83
SDF4-202ENST00000360001 JAKMIP3Q5VZ66 844 aa26.47■■□□□ 1.83
SDF4-202ENST00000360001 FSIP1Q8NA03 581 aa26.47■■□□□ 1.83
SDF4-202ENST00000360001 MRPS27Q92552 414 aaKnown RBP26.47■■□□□ 1.83
SDF4-202ENST00000360001 PSTPIP2Q9H939 334 aa26.47■■□□□ 1.83
SDF4-202ENST00000360001 BMP15O95972 392 aa26.47■■□□□ 1.83
SDF4-202ENST00000360001 MRPL12P52815 198 aaKnown RBP26.47■■□□□ 1.83
SDF4-202ENST00000360001 NONOQ15233 471 aaKnown RBP eCLIP26.47■■□□□ 1.831e-7■■■■□ 26.4
SDF4-202ENST00000360001 KRI1Q8N9T8 703 aaKnown RBP26.47■■□□□ 1.83
SDF4-202ENST00000360001 FBXO2Q9UK22 296 aaPredicted RBP26.47■■□□□ 1.83
SDF4-202ENST00000360001 AFG3L2Q9Y4W6 797 aa26.47■■□□□ 1.83
SDF4-202ENST00000360001 MRVI1Q9Y6F6 885 aa26.47■■□□□ 1.83
SDF4-202ENST00000360001 CUTAO60888 179 aa26.46■■□□□ 1.83
SDF4-202ENST00000360001 POTEIP0CG38 1075 aa26.46■■□□□ 1.83
SDF4-202ENST00000360001 POTEJP0CG39 1038 aa26.46■■□□□ 1.83
SDF4-202ENST00000360001 PTPREP23469 700 aa26.46■■□□□ 1.83
SDF4-202ENST00000360001 NF2P35240 595 aa26.46■■□□□ 1.83
SDF4-202ENST00000360001 ZNF445P59923 1031 aa26.46■■□□□ 1.83
SDF4-202ENST00000360001 USH1GQ495M9 461 aa26.46■■□□□ 1.83
SDF4-202ENST00000360001 CLIC6Q96NY7 704 aa26.46■■□□□ 1.83
SDF4-202ENST00000360001 CMA1P23946 247 aa26.46■■□□□ 1.83
SDF4-202ENST00000360001 IREB2P48200 963 aaKnown RBP26.46■■□□□ 1.83
SDF4-202ENST00000360001 UBE2SQ16763 222 aa26.46■■□□□ 1.83
SDF4-202ENST00000360001 ENGASEQ8NFI3 743 aa26.46■■□□□ 1.83
SDF4-202ENST00000360001 C12orf42Q96LP6 360 aa26.46■■□□□ 1.83
SDF4-202ENST00000360001 GLT8D2Q9H1C3 349 aa26.46■■□□□ 1.83
SDF4-202ENST00000360001 SMCHD1A6NHR9 2005 aa26.45■■□□□ 1.82
SDF4-202ENST00000360001 TAL1P17542 331 aaPredicted RBP26.45■■□□□ 1.82
SDF4-202ENST00000360001 SNW1Q13573 536 aaKnown RBP26.45■■□□□ 1.82
SDF4-202ENST00000360001 CCDC73Q6ZRK6 1079 aa26.45■■□□□ 1.82
SDF4-202ENST00000360001 SLF1Q9BQI6 1058 aa26.45■■□□□ 1.82
SDF4-202ENST00000360001 DDX19AQ9NUU7 478 aaKnown RBP26.45■■□□□ 1.82
SDF4-202ENST00000360001 SRPRBQ9Y5M8 271 aaKnown RBP26.45■■□□□ 1.82
SDF4-202ENST00000360001 C19orf81C9J6K1 198 aa26.44■■□□□ 1.82
SDF4-202ENST00000360001 FAM160A1Q05DH4 1040 aa26.44■■□□□ 1.82
SDF4-202ENST00000360001 SHC4Q6S5L8 630 aa26.44■■□□□ 1.82
SDF4-202ENST00000360001 PRPF38AQ8NAV1 312 aaKnown RBP26.44■■□□□ 1.82
SDF4-202ENST00000360001 TANGO6Q9C0B7 1094 aa26.44■■□□□ 1.82
SDF4-202ENST00000360001 RPAP3Q9H6T3 665 aaPredicted RBP26.44■■□□□ 1.82
SDF4-202ENST00000360001 CSADQ9Y600 493 aa26.44■■□□□ 1.82
SDF4-202ENST00000360001 A0A1B0GVL5 298 aa26.44■■□□□ 1.82
SDF4-202ENST00000360001 SYCE3A1L190 88 aa26.44■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms