RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 MLPHQ9BV36 600 aaPredicted RBP6.72□□□□□ -1.33
VCAN-203ENST00000343200 SLC26A6Q9BXS9 759 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 KRT23Q9C075 422 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 ORC3Q9UBD5 711 aaPredicted RBP6.72□□□□□ -1.33
VCAN-203ENST00000343200 SPTBN1Q01082 2364 aaKnown RBP6.72□□□□□ -1.33
VCAN-203ENST00000343200 NBPF26B4DH59 902 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 KPNB1Q14974 876 aaKnown RBP6.72□□□□□ -1.33
VCAN-203ENST00000343200 DEPDC1Q5TB30 811 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 NBPF15Q8N660 670 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 MKNK2Q9HBH9 465 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 ZNF148Q9UQR1 794 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 EXOC6BQ9Y2D4 811 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 TRIM37O94972 964 aa6.71□□□□□ -1.33
VCAN-203ENST00000343200 ARHGDIAP52565 204 aa6.71□□□□□ -1.33
VCAN-203ENST00000343200 RIOK1Q9BRS2 568 aaKnown RBP6.71□□□□□ -1.33
VCAN-203ENST00000343200 NOC4LQ9BVI4 516 aaKnown RBP6.71□□□□□ -1.33
VCAN-203ENST00000343200 SLC4A7Q9Y6M7 1214 aa6.71□□□□□ -1.33
VCAN-203ENST00000343200 KMT2EQ8IZD2 1858 aa6.71□□□□□ -1.33
VCAN-203ENST00000343200 SCN5AQ14524 2016 aa6.71□□□□□ -1.33
VCAN-203ENST00000343200 SLC8A3P57103 927 aa6.71□□□□□ -1.33
VCAN-203ENST00000343200 NCAPH2Q6IBW4 605 aa6.71□□□□□ -1.33
VCAN-203ENST00000343200 EMC3Q9P0I2 261 aa6.71□□□□□ -1.33
VCAN-203ENST00000343200 MCM3APO60318 1980 aa6.71□□□□□ -1.33
VCAN-203ENST00000343200 GSTA4O15217 222 aa6.71□□□□□ -1.33
VCAN-203ENST00000343200 PYGBP11216 843 aa6.71□□□□□ -1.33
VCAN-203ENST00000343200 TRIM27P14373 513 aa6.71□□□□□ -1.33
VCAN-203ENST00000343200 NFRKBQ6P4R8 1299 aa6.71□□□□□ -1.33
VCAN-203ENST00000343200 TRIM56Q9BRZ2 755 aaKnown RBP6.71□□□□□ -1.33
VCAN-203ENST00000343200 TMA7Q9Y2S6 64 aaKnown RBP6.71□□□□□ -1.33
VCAN-203ENST00000343200 TRIM75PA6NK02 468 aa6.71□□□□□ -1.34
VCAN-203ENST00000343200 HLA-DPA1P20036 260 aa6.71□□□□□ -1.34
VCAN-203ENST00000343200 GABPAQ06546 454 aa6.71□□□□□ -1.34
VCAN-203ENST00000343200 TSC22D1Q15714 1073 aa6.71□□□□□ -1.34
VCAN-203ENST00000343200 TMEM259Q4ZIN3 620 aa6.71□□□□□ -1.34
VCAN-203ENST00000343200 TEDDM1Q5T9Z0 273 aa6.71□□□□□ -1.34
VCAN-203ENST00000343200 SRLQ86TD4 932 aa6.71□□□□□ -1.34
VCAN-203ENST00000343200 C17orf50Q8WW18 174 aa6.71□□□□□ -1.34
VCAN-203ENST00000343200 NUDCD1Q96RS6 583 aa6.71□□□□□ -1.34
VCAN-203ENST00000343200 SIKE1Q9BRV8 207 aa6.71□□□□□ -1.34
VCAN-203ENST00000343200 AMFRQ9UKV5 643 aa6.71□□□□□ -1.34
VCAN-203ENST00000343200 UBE4BO95155 1302 aa6.71□□□□□ -1.34
VCAN-203ENST00000343200 NLRP9Q7RTR0 991 aa6.71□□□□□ -1.34
VCAN-203ENST00000343200 SLF2Q8IX21 1173 aa6.71□□□□□ -1.34
VCAN-203ENST00000343200 RUBCNQ92622 972 aa6.71□□□□□ -1.34
VCAN-203ENST00000343200 EFHD2Q96C19 240 aaPredicted RBP6.71□□□□□ -1.34
VCAN-203ENST00000343200 ANKRD27Q96NW4 1050 aa6.71□□□□□ -1.34
VCAN-203ENST00000343200 ITSN1Q15811 1721 aa6.71□□□□□ -1.34
VCAN-203ENST00000343200 POLR2AP24928 1970 aaKnown RBP6.71□□□□□ -1.34
VCAN-203ENST00000343200 TBKBP1A7MCY6 615 aa6.71□□□□□ -1.34
VCAN-203ENST00000343200 EEF1GP26641 437 aaKnown RBP6.71□□□□□ -1.34
VCAN-203ENST00000343200 PRKAR2BP31323 418 aa6.71□□□□□ -1.34
VCAN-203ENST00000343200 PDE6CP51160 858 aa6.71□□□□□ -1.34
VCAN-203ENST00000343200 DCTN2Q13561 401 aaKnown RBP6.71□□□□□ -1.34
VCAN-203ENST00000343200 WDR44Q5JSH3 913 aa6.71□□□□□ -1.34
VCAN-203ENST00000343200 C1orf146Q5VVC0 180 aa6.71□□□□□ -1.34
VCAN-203ENST00000343200 HIBCHQ6NVY1 386 aaPredicted RBP6.71□□□□□ -1.34
VCAN-203ENST00000343200 RINLQ6ZS11 566 aa6.71□□□□□ -1.34
VCAN-203ENST00000343200 RALGAPA1Q6GYQ0 2036 aa6.71□□□□□ -1.34
VCAN-203ENST00000343200 RANBP6O60518 1105 aaKnown RBP6.71□□□□□ -1.34
VCAN-203ENST00000343200 FANCCQ00597 558 aa6.71□□□□□ -1.34
VCAN-203ENST00000343200 SFMBT2Q5VUG0 894 aa6.71□□□□□ -1.34
VCAN-203ENST00000343200 ELMSAN1Q6PJG2 1045 aa6.71□□□□□ -1.34
VCAN-203ENST00000343200 LRRC49Q8IUZ0 686 aa6.71□□□□□ -1.34
VCAN-203ENST00000343200 PPP1R14BQ96C90 147 aa6.71□□□□□ -1.34
VCAN-203ENST00000343200 BIN2Q9UBW5 565 aaPredicted RBP6.71□□□□□ -1.34
VCAN-203ENST00000343200 CEP126Q9P2H0 1117 aa6.71□□□□□ -1.34
VCAN-203ENST00000343200 IPO11Q9UI26 975 aaKnown RBP6.71□□□□□ -1.34
VCAN-203ENST00000343200 SPTBN2O15020 2390 aa6.71□□□□□ -1.34
VCAN-203ENST00000343200 MYCNP04198 464 aaPredicted RBP6.7□□□□□ -1.34
VCAN-203ENST00000343200 ABCD1P33897 745 aa6.7□□□□□ -1.34
VCAN-203ENST00000343200 SMTNP53814 917 aa6.7□□□□□ -1.34
VCAN-203ENST00000343200 TMTC4Q5T4D3 741 aa6.7□□□□□ -1.34
VCAN-203ENST00000343200 PLEKHM3Q6ZWE6 761 aa6.7□□□□□ -1.34
VCAN-203ENST00000343200 UBE2Q1Q7Z7E8 422 aa6.7□□□□□ -1.34
VCAN-203ENST00000343200 SNX5Q9Y5X3 404 aa6.7□□□□□ -1.34
VCAN-203ENST00000343200 NESP48681 1621 aa6.7□□□□□ -1.34
VCAN-203ENST00000343200 PSMA4P25789 261 aaKnown RBP6.7□□□□□ -1.34
VCAN-203ENST00000343200 VCPP55072 806 aaKnown RBP6.7□□□□□ -1.34
VCAN-203ENST00000343200 MRPS25P82663 173 aaKnown RBP6.7□□□□□ -1.34
VCAN-203ENST00000343200 NR1H3Q13133 447 aa6.7□□□□□ -1.34
VCAN-203ENST00000343200 CRACR2BQ8N4Y2 399 aaPredicted RBP6.7□□□□□ -1.34
VCAN-203ENST00000343200 THAP11Q96EK4 314 aa6.7□□□□□ -1.34
VCAN-203ENST00000343200 TRPC7Q9HCX4 862 aa6.7□□□□□ -1.34
VCAN-203ENST00000343200 CALUO43852 315 aaPredicted RBP6.7□□□□□ -1.34
VCAN-203ENST00000343200 KIF11P52732 1056 aa6.7□□□□□ -1.34
VCAN-203ENST00000343200 NDUFA5Q16718 116 aa6.7□□□□□ -1.34
VCAN-203ENST00000343200 KLHL7Q8IXQ5 586 aa6.7□□□□□ -1.34
VCAN-203ENST00000343200 SRRM1Q8IYB3 904 aaKnown RBP6.7□□□□□ -1.34
VCAN-203ENST00000343200 TBC1D22AQ8WUA7 517 aa6.7□□□□□ -1.34
VCAN-203ENST00000343200 FMO2Q99518 471 aa6.7□□□□□ -1.34
VCAN-203ENST00000343200 BLOC1S6Q9UL45 172 aa6.7□□□□□ -1.34
VCAN-203ENST00000343200 PRG3Q9Y2Y8 225 aaPredicted RBP6.7□□□□□ -1.34
VCAN-203ENST00000343200 MINDY4BA8MYZ0 360 aa6.7□□□□□ -1.34
VCAN-203ENST00000343200 GOLGA8MH3BSY2 632 aa6.7□□□□□ -1.34
VCAN-203ENST00000343200 CASP2P42575 452 aa6.7□□□□□ -1.34
VCAN-203ENST00000343200 PAK1Q13153 545 aa6.7□□□□□ -1.34
VCAN-203ENST00000343200 CCDC85BQ15834 202 aaPredicted RBP6.7□□□□□ -1.34
VCAN-203ENST00000343200 RTN1Q16799 776 aa6.7□□□□□ -1.34
VCAN-203ENST00000343200 LONRF2Q1L5Z9 754 aa6.7□□□□□ -1.34
VCAN-203ENST00000343200 DAB2IPQ5VWQ8 1189 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms