RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 ADCYAP1R1P41586 468 aa23.04■■□□□ 1.28
LIME1-201ENST00000309546 MFSD6Q6ZSS7 791 aa23.04■■□□□ 1.28
LIME1-201ENST00000309546 TBC1D10CQ8IV04 446 aa23.04■■□□□ 1.28
LIME1-201ENST00000309546 MSL3Q8N5Y2 521 aaKnown RBP23.04■■□□□ 1.28
LIME1-201ENST00000309546 UBE2OQ9C0C9 1292 aaKnown RBP23.04■■□□□ 1.28
LIME1-201ENST00000309546 ACAD9Q9H845 621 aa23.04■■□□□ 1.28
LIME1-201ENST00000309546 RNF146Q9NTX7 359 aa23.04■■□□□ 1.28
LIME1-201ENST00000309546 SYNGAP1Q96PV0 1343 aa23.04■■□□□ 1.28
LIME1-201ENST00000309546 PGK1P00558 417 aa23.03■■□□□ 1.28
LIME1-201ENST00000309546 IRX6P78412 446 aaPredicted RBP23.03■■□□□ 1.28
LIME1-201ENST00000309546 MDM2Q00987 491 aaPredicted RBP23.03■■□□□ 1.28
LIME1-201ENST00000309546 AKNAD1Q5T1N1 836 aa23.03■■□□□ 1.28
LIME1-201ENST00000309546 DCAF4Q8WV16 495 aa23.03■■□□□ 1.28
LIME1-201ENST00000309546 TMEM47Q9BQJ4 181 aa23.03■■□□□ 1.28
LIME1-201ENST00000309546 PRR12Q9ULL5 1215 aa23.03■■□□□ 1.28
LIME1-201ENST00000309546 PLA2G6O60733 806 aa23.02■■□□□ 1.28
LIME1-201ENST00000309546 SNAI1O95863 264 aaPredicted RBP23.02■■□□□ 1.28
LIME1-201ENST00000309546 TOP1P11387 765 aaKnown RBP23.02■■□□□ 1.28
LIME1-201ENST00000309546 ALAS1P13196 640 aa23.02■■□□□ 1.28
LIME1-201ENST00000309546 NOVP48745 357 aa23.02■■□□□ 1.28
LIME1-201ENST00000309546 SLC39A5Q6ZMH5 540 aa23.02■■□□□ 1.28
LIME1-201ENST00000309546 DHX30Q7L2E3 1194 aaKnown RBP eCLIP23.02■■□□□ 1.28
LIME1-201ENST00000309546 ZNF467Q7Z7K2 595 aaPredicted RBP23.02■■□□□ 1.28
LIME1-201ENST00000309546 RNF180Q86T96 592 aa23.02■■□□□ 1.28
LIME1-201ENST00000309546 PRKAG2Q9UGJ0 569 aa23.02■■□□□ 1.28
LIME1-201ENST00000309546 ZNF536O15090 1300 aa23.02■■□□□ 1.28
LIME1-201ENST00000309546 FRMPD2Q68DX3 1309 aaPredicted RBP23.02■■□□□ 1.28
LIME1-201ENST00000309546 HIP1O00291 1037 aa23.01■■□□□ 1.27
LIME1-201ENST00000309546 SOX1O00570 391 aaPredicted RBP23.01■■□□□ 1.27
LIME1-201ENST00000309546 MAMDC4Q6UXC1 1216 aa23.01■■□□□ 1.27
LIME1-201ENST00000309546 FGD4Q96M96 766 aa23.01■■□□□ 1.27
LIME1-201ENST00000309546 TRERF1Q96PN7 1200 aa23.01■■□□□ 1.27
LIME1-201ENST00000309546 RNF41Q9H4P4 317 aaPredicted RBP23.01■■□□□ 1.27
LIME1-201ENST00000309546 A1CFQ9NQ94 594 aaKnown RBP23.01■■□□□ 1.27
LIME1-201ENST00000309546 CDKN2AIPQ9NXV6 580 aaPredicted RBP23.01■■□□□ 1.27
LIME1-201ENST00000309546 POTEB2H3BUK9 544 aa23■■□□□ 1.27
LIME1-201ENST00000309546 ZNF213O14771 459 aa23■■□□□ 1.27
LIME1-201ENST00000309546 PCP11498 1178 aaKnown RBP23■■□□□ 1.27
LIME1-201ENST00000309546 SLC16A2P36021 539 aa23■■□□□ 1.27
LIME1-201ENST00000309546 CNTN2Q02246 1040 aa23■■□□□ 1.27
LIME1-201ENST00000309546 TKFCQ3LXA3 575 aa23■■□□□ 1.27
LIME1-201ENST00000309546 TRIM60Q495X7 471 aa23■■□□□ 1.27
LIME1-201ENST00000309546 TTBK2Q6IQ55 1244 aa23■■□□□ 1.27
LIME1-201ENST00000309546 ARMCX2Q7L311 632 aa23■■□□□ 1.27
LIME1-201ENST00000309546 LRCH3Q96II8 777 aa23■■□□□ 1.27
LIME1-201ENST00000309546 LBHD1Q9BQE6 289 aaPredicted RBP23■■□□□ 1.27
LIME1-201ENST00000309546 GPCPD1Q9NPB8 672 aa23■■□□□ 1.27
LIME1-201ENST00000309546 PRDM5Q9NQX1 630 aaPredicted RBP23■■□□□ 1.27
LIME1-201ENST00000309546 TCP11L1Q9NUJ3 509 aa23■■□□□ 1.27
LIME1-201ENST00000309546 FAM184BQ9ULE4 1060 aa23■■□□□ 1.27
LIME1-201ENST00000309546 CCPG1Q9ULG6 757 aa23■■□□□ 1.27
LIME1-201ENST00000309546 LTBP2Q14767 1821 aa23■■□□□ 1.27
LIME1-201ENST00000309546 NEDD4P46934 1319 aa23■■□□□ 1.27
LIME1-201ENST00000309546 DNAH12Q6ZR08 3092 aa23■■□□□ 1.27
LIME1-201ENST00000309546 TDHQ8IZJ6 230 aa22.99■■□□□ 1.27
LIME1-201ENST00000309546 PHF24Q9UPV7 400 aa22.99■■□□□ 1.27
LIME1-201ENST00000309546 SYNRGQ9UMZ2 1314 aa22.99■■□□□ 1.27
LIME1-201ENST00000309546 ACVR2BQ13705 512 aa22.98■■□□□ 1.27
LIME1-201ENST00000309546 CCDC144CPQ8IYA2 1237 aa22.98■■□□□ 1.27
LIME1-201ENST00000309546 ESR2Q92731 530 aa22.98■■□□□ 1.27
LIME1-201ENST00000309546 ZKSCAN3Q9BRR0 538 aa22.98■■□□□ 1.27
LIME1-201ENST00000309546 ADAMTS4O75173 837 aa22.97■■□□□ 1.27
LIME1-201ENST00000309546 PDE4AP27815 886 aa22.97■■□□□ 1.27
LIME1-201ENST00000309546 SNX17Q15036 470 aa22.97■■□□□ 1.27
LIME1-201ENST00000309546 MUM1L1Q5H9M0 696 aa22.97■■□□□ 1.27
LIME1-201ENST00000309546 SYDE2Q5VT97 1194 aa22.97■■□□□ 1.27
LIME1-201ENST00000309546 FAM133AQ8N9E0 248 aa22.97■■□□□ 1.27
LIME1-201ENST00000309546 ABHD16BQ9H3Z7 469 aa22.97■■□□□ 1.27
LIME1-201ENST00000309546 LRRC37A2A6NM11 1700 aa22.96■■□□□ 1.27
LIME1-201ENST00000309546 LCTP09848 1927 aa22.96■■□□□ 1.27
LIME1-201ENST00000309546 A0A1W2PQ45 241 aaPredicted RBP22.96■■□□□ 1.27
LIME1-201ENST00000309546 A0A1W2PQY0 241 aa22.96■■□□□ 1.27
LIME1-201ENST00000309546 ICAM1P05362 532 aa22.96■■□□□ 1.27
LIME1-201ENST00000309546 PDHBP11177 359 aa22.96■■□□□ 1.27
LIME1-201ENST00000309546 CCDC144BQ3MJ40 725 aa22.96■■□□□ 1.27
LIME1-201ENST00000309546 NSMFQ6X4W1 530 aa22.96■■□□□ 1.27
LIME1-201ENST00000309546 RANBP17Q9H2T7 1088 aaKnown RBP22.96■■□□□ 1.27
LIME1-201ENST00000309546 SZT2Q5T011 3432 aa22.95■■□□□ 1.27
LIME1-201ENST00000309546 BTNL9Q6UXG8 535 aa22.95■■□□□ 1.26
LIME1-201ENST00000309546 TTC14Q96N46 770 aa22.95■■□□□ 1.26
LIME1-201ENST00000309546 DSCC1Q9BVC3 393 aa22.95■■□□□ 1.26
LIME1-201ENST00000309546 MYADML2A6NDP7 307 aa22.94■■□□□ 1.26
LIME1-201ENST00000309546 SOWAHBA6NEL2 793 aa22.94■■□□□ 1.26
LIME1-201ENST00000309546 ADCY6O43306 1168 aa22.94■■□□□ 1.26
LIME1-201ENST00000309546 KDM4AO75164 1064 aa22.94■■□□□ 1.26
LIME1-201ENST00000309546 DUSP11O75319 330 aaKnown RBP22.94■■□□□ 1.26
LIME1-201ENST00000309546 C6orf222P0C671 652 aaPredicted RBP22.94■■□□□ 1.26
LIME1-201ENST00000309546 GSPT1P15170 499 aaKnown RBP22.94■■□□□ 1.26
LIME1-201ENST00000309546 IMMTQ16891 758 aaKnown RBP22.94■■□□□ 1.26
LIME1-201ENST00000309546 TTC22Q5TAA0 569 aa22.94■■□□□ 1.26
LIME1-201ENST00000309546 PDLIM7Q9NR12 457 aa22.94■■□□□ 1.26
LIME1-201ENST00000309546 CYP39A1Q9NYL5 469 aa22.94■■□□□ 1.26
LIME1-201ENST00000309546 ASB14A6NK59 587 aa22.93■■□□□ 1.26
LIME1-201ENST00000309546 B4E1Z4 1266 aa22.93■■□□□ 1.26
LIME1-201ENST00000309546 ACLYP53396 1101 aa22.93■■□□□ 1.26
LIME1-201ENST00000309546 IRX5P78411 483 aaPredicted RBP22.93■■□□□ 1.26
LIME1-201ENST00000309546 TLE2Q04725 743 aa22.93■■□□□ 1.26
LIME1-201ENST00000309546 ZNF543Q08ER8 600 aa22.93■■□□□ 1.26
LIME1-201ENST00000309546 C1orf53Q5VUE5 145 aa22.93■■□□□ 1.26
LIME1-201ENST00000309546 IQCA1Q86XH1 822 aa22.93■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms