RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 LRP2BPQ9P2M1 347 aa6.65□□□□□ -1.35
CCDC54-201ENST00000261058 SCO2A0A1W2PP80 73 aa6.64□□□□□ -1.35
CCDC54-201ENST00000261058 KCNH1O95259 989 aa6.64□□□□□ -1.35
CCDC54-201ENST00000261058 POU4F1Q01851 419 aa6.64□□□□□ -1.35
CCDC54-201ENST00000261058 AOC3Q16853 763 aa6.64□□□□□ -1.35
CCDC54-201ENST00000261058 RTP2Q5QGT7 225 aa6.64□□□□□ -1.35
CCDC54-201ENST00000261058 RNF111Q6ZNA4 994 aa6.64□□□□□ -1.35
CCDC54-201ENST00000261058 BTN2A2Q8WVV5 523 aa6.64□□□□□ -1.35
CCDC54-201ENST00000261058 COPS5Q92905 334 aa6.64□□□□□ -1.35
CCDC54-201ENST00000261058 OSBP2Q969R2 916 aa6.64□□□□□ -1.35
CCDC54-201ENST00000261058 ZDHHC15Q96MV8 337 aa6.64□□□□□ -1.35
CCDC54-201ENST00000261058 FCRL3Q96P31 734 aaPredicted RBP6.64□□□□□ -1.35
CCDC54-201ENST00000261058 SLC26A8Q96RN1 970 aa6.64□□□□□ -1.35
CCDC54-201ENST00000261058 DUSP13Q9UII6 198 aa6.64□□□□□ -1.35
CCDC54-201ENST00000261058 TRAV20A0A0B4J274 112 aa6.63□□□□□ -1.35
CCDC54-201ENST00000261058 TMEM82A0PJX8 343 aa6.63□□□□□ -1.35
CCDC54-201ENST00000261058 MEIS1O00470 390 aa6.63□□□□□ -1.35
CCDC54-201ENST00000261058 AURKAO14965 403 aa6.63□□□□□ -1.35
CCDC54-201ENST00000261058 HOXC12P31275 282 aa6.63□□□□□ -1.35
CCDC54-201ENST00000261058 GFRA1P56159 465 aa6.63□□□□□ -1.35
CCDC54-201ENST00000261058 AMPD2Q01433 879 aa6.63□□□□□ -1.35
CCDC54-201ENST00000261058 TEKQ02763 1124 aa6.63□□□□□ -1.35
CCDC54-201ENST00000261058 TESK1Q15569 626 aa6.63□□□□□ -1.35
CCDC54-201ENST00000261058 PLEKHG4Q58EX7 1191 aa6.63□□□□□ -1.35
CCDC54-201ENST00000261058 YOD1Q5VVQ6 348 aaPredicted RBP6.63□□□□□ -1.35
CCDC54-201ENST00000261058 EGFLAMQ63HQ2 1017 aa6.63□□□□□ -1.35
CCDC54-201ENST00000261058 CWF19L1Q69YN2 538 aaKnown RBP6.63□□□□□ -1.35
CCDC54-201ENST00000261058 EXOC2Q96KP1 924 aa6.63□□□□□ -1.35
CCDC54-201ENST00000261058 CCDC140Q96MF4 163 aa6.63□□□□□ -1.35
CCDC54-201ENST00000261058 LMCD1Q9NZU5 365 aa6.63□□□□□ -1.35
CCDC54-201ENST00000261058 TCFL5Q9UL49 500 aa6.63□□□□□ -1.35
CCDC54-201ENST00000261058 PCDHA11Q9Y5I1 949 aa6.63□□□□□ -1.35
CCDC54-201ENST00000261058 CCDC163A0A0D9SF12 145 aa6.62□□□□□ -1.35
CCDC54-201ENST00000261058 ESYT3A0FGR9 886 aa6.62□□□□□ -1.35
CCDC54-201ENST00000261058 VAMP4O75379 141 aa6.62□□□□□ -1.35
CCDC54-201ENST00000261058 PABPC1P11940 636 aaKnown RBP6.62□□□□□ -1.35
CCDC54-201ENST00000261058 HSD3B2P26439 372 aa6.62□□□□□ -1.35
CCDC54-201ENST00000261058 PCBP3P57721 371 aaKnown RBP6.62□□□□□ -1.35
CCDC54-201ENST00000261058 MAP4K2Q12851 820 aa6.62□□□□□ -1.35
CCDC54-201ENST00000261058 RCSD1Q6JBY9 416 aa6.62□□□□□ -1.35
CCDC54-201ENST00000261058 VSIG10LQ86VR7 867 aa6.62□□□□□ -1.35
CCDC54-201ENST00000261058 SCUBE1Q8IWY4 988 aa6.62□□□□□ -1.35
CCDC54-201ENST00000261058 PPP1R14AQ96A00 147 aa6.62□□□□□ -1.35
CCDC54-201ENST00000261058 CCDC39Q9UFE4 941 aa6.62□□□□□ -1.35
CCDC54-201ENST00000261058 GPR55Q9Y2T6 319 aaPredicted RBP6.62□□□□□ -1.35
CCDC54-201ENST00000261058 DLX3O60479 287 aa6.61□□□□□ -1.35
CCDC54-201ENST00000261058 SYPP08247 313 aa6.61□□□□□ -1.35
CCDC54-201ENST00000261058 IFNGR1P15260 489 aa6.61□□□□□ -1.35
CCDC54-201ENST00000261058 NOP2P46087 812 aaKnown RBP6.61□□□□□ -1.35
CCDC54-201ENST00000261058 CEBPAP49715 358 aaPredicted RBP6.61□□□□□ -1.35
CCDC54-201ENST00000261058 BNIP3Q12983 259 aa6.61□□□□□ -1.35
CCDC54-201ENST00000261058 SF1Q15637 639 aaKnown RBP6.61□□□□□ -1.35
CCDC54-201ENST00000261058 SLC35F1Q5T1Q4 408 aa6.61□□□□□ -1.35
CCDC54-201ENST00000261058 SPRED2Q7Z698 418 aa6.61□□□□□ -1.35
CCDC54-201ENST00000261058 KIAA0907Q7Z7F0 614 aaPredicted RBP6.61□□□□□ -1.35
CCDC54-201ENST00000261058 HOMER1Q86YM7 354 aa6.61□□□□□ -1.35
CCDC54-201ENST00000261058 SYNPOQ8N3V7 929 aa6.61□□□□□ -1.35
CCDC54-201ENST00000261058 KREMEN2Q8NCW0 462 aa6.61□□□□□ -1.35
CCDC54-201ENST00000261058 IER2Q9BTL4 223 aa6.61□□□□□ -1.35
CCDC54-201ENST00000261058 DHRS4Q9BTZ2 278 aa6.61□□□□□ -1.35
CCDC54-201ENST00000261058 FOXP3Q9BZS1 431 aa6.61□□□□□ -1.35
CCDC54-201ENST00000261058 FANCLQ9NW38 375 aa6.61□□□□□ -1.35
CCDC54-201ENST00000261058 SLC5A6Q9Y289 635 aa6.61□□□□□ -1.35
CCDC54-201ENST00000261058 DNAJC25-GNG10A0A024R161 153 aa6.6□□□□□ -1.35
CCDC54-201ENST00000261058 CPP00450 1065 aa6.6□□□□□ -1.35
CCDC54-201ENST00000261058 CD3EP07766 207 aa6.6□□□□□ -1.35
CCDC54-201ENST00000261058 CD8BP10966 210 aa6.6□□□□□ -1.35
CCDC54-201ENST00000261058 ENDOUP21128 410 aaKnown RBP6.6□□□□□ -1.35
CCDC54-201ENST00000261058 CD96P40200 585 aa6.6□□□□□ -1.35
CCDC54-201ENST00000261058 EGR3Q06889 387 aa6.6□□□□□ -1.35
CCDC54-201ENST00000261058 FAM209AQ5JX71 171 aa6.6□□□□□ -1.35
CCDC54-201ENST00000261058 CREG2Q8IUH2 290 aa6.6□□□□□ -1.35
CCDC54-201ENST00000261058 NPLOC4Q8TAT6 608 aa6.6□□□□□ -1.35
CCDC54-201ENST00000261058 APPBP2Q92624 585 aa6.6□□□□□ -1.35
CCDC54-201ENST00000261058 MRPS23Q9Y3D9 190 aaKnown RBP6.6□□□□□ -1.35
CCDC54-201ENST00000261058 BACE2Q9Y5Z0 518 aa6.6□□□□□ -1.35
CCDC54-201ENST00000261058 TRBV23-1A0A0A0MS06 115 aa6.59□□□□□ -1.35
CCDC54-201ENST00000261058 STXBP3O00186 592 aa6.59□□□□□ -1.35
CCDC54-201ENST00000261058 FGF10O15520 208 aaPredicted RBP6.59□□□□□ -1.35
CCDC54-201ENST00000261058 PRODHO43272 600 aa6.59□□□□□ -1.35
CCDC54-201ENST00000261058 CDC45O75419 566 aa6.59□□□□□ -1.35
CCDC54-201ENST00000261058 C6orf222P0C671 652 aaPredicted RBP6.59□□□□□ -1.35
CCDC54-201ENST00000261058 LTKP29376 864 aa6.59□□□□□ -1.35
CCDC54-201ENST00000261058 SCRN1Q12765 414 aa6.59□□□□□ -1.35
CCDC54-201ENST00000261058 DPY19L1Q2PZI1 675 aa6.59□□□□□ -1.35
CCDC54-201ENST00000261058 ACBD5Q5T8D3 534 aaPredicted RBP6.59□□□□□ -1.35
CCDC54-201ENST00000261058 EEF1DP3Q658K8 133 aa6.59□□□□□ -1.35
CCDC54-201ENST00000261058 DENND5AQ6IQ26 1287 aa6.59□□□□□ -1.35
CCDC54-201ENST00000261058 NSMFQ6X4W1 530 aa6.59□□□□□ -1.35
CCDC54-201ENST00000261058 C16orf86Q6ZW13 317 aa6.59□□□□□ -1.35
CCDC54-201ENST00000261058 FAM177A1Q8N128 213 aaPredicted RBP6.59□□□□□ -1.35
CCDC54-201ENST00000261058 TMEM145Q8NBT3 493 aa6.59□□□□□ -1.35
CCDC54-201ENST00000261058 G6PC3Q9BUM1 346 aa6.59□□□□□ -1.35
CCDC54-201ENST00000261058 C2orf71A6NGG8 1288 aa6.59□□□□□ -1.36
CCDC54-201ENST00000261058 KCNQ2O43526 872 aa6.59□□□□□ -1.36
CCDC54-201ENST00000261058 THBDP07204 575 aa6.59□□□□□ -1.36
CCDC54-201ENST00000261058 CANXP27824 592 aaKnown RBP6.59□□□□□ -1.36
CCDC54-201ENST00000261058 L1CAMP32004 1257 aa6.59□□□□□ -1.36
CCDC54-201ENST00000261058 NTRK3Q16288 839 aa6.59□□□□□ -1.36
CCDC54-201ENST00000261058 ARTNQ5T4W7 220 aa6.59□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms