RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 DZIP1Q86YF9 867 aaKnown RBP16.82■□□□□ 0.28
CLN3-253ENST00000636977 COL5A3P25940 1745 aaPredicted RBP16.81■□□□□ 0.28
CLN3-253ENST00000636977 TBC1D8O95759 1140 aa16.81■□□□□ 0.28
CLN3-253ENST00000636977 CAPN2P17655 700 aa16.81■□□□□ 0.28
CLN3-253ENST00000636977 TM4SF1P30408 202 aa16.81■□□□□ 0.28
CLN3-253ENST00000636977 CTAGE1Q96RT6 745 aa16.81■□□□□ 0.28
CLN3-253ENST00000636977 SETDB2Q96T68 719 aa16.81■□□□□ 0.28
CLN3-253ENST00000636977 KCNJ18B7U540 433 aa16.81■□□□□ 0.28
CLN3-253ENST00000636977 SEMA3EO15041 775 aa16.81■□□□□ 0.28
CLN3-253ENST00000636977 POLR3GO15318 223 aaPredicted RBP16.81■□□□□ 0.28
CLN3-253ENST00000636977 KCNJ12Q14500 433 aa16.81■□□□□ 0.28
CLN3-253ENST00000636977 INF2Q27J81 1249 aa16.81■□□□□ 0.28
CLN3-253ENST00000636977 SBK1Q52WX2 424 aa16.81■□□□□ 0.28
CLN3-253ENST00000636977 TCP11X2Q5H9J9 407 aa16.81■□□□□ 0.28
CLN3-253ENST00000636977 CC2D1AQ6P1N0 951 aaPredicted RBP16.81■□□□□ 0.28
CLN3-253ENST00000636977 IRF2BP1Q8IU81 584 aa16.81■□□□□ 0.28
CLN3-253ENST00000636977 TEX2Q8IWB9 1127 aa16.81■□□□□ 0.28
CLN3-253ENST00000636977 ZCCHC17Q9NP64 241 aaKnown RBP16.81■□□□□ 0.28
CLN3-253ENST00000636977 ARGLU1Q9NWB6 273 aaPredicted RBP16.81■□□□□ 0.28
CLN3-253ENST00000636977 LIMA1Q9UHB6 759 aaKnown RBP16.81■□□□□ 0.28
CLN3-253ENST00000636977 SAP30BPQ9UHR5 308 aaKnown RBP16.81■□□□□ 0.28
CLN3-253ENST00000636977 MAD2L2Q9UI95 211 aa16.81■□□□□ 0.28
CLN3-253ENST00000636977 RWDD2AQ9UIY3 292 aa16.81■□□□□ 0.28
CLN3-253ENST00000636977 KIAA1551Q9HCM1 1747 aa16.81■□□□□ 0.28
CLN3-253ENST00000636977 STAT6P42226 847 aa16.8■□□□□ 0.28
CLN3-253ENST00000636977 CT47A1Q5JQC4 288 aaPredicted RBP16.8■□□□□ 0.28
CLN3-253ENST00000636977 ZNF658Q5TYW1 1059 aaPredicted RBP16.8■□□□□ 0.28
CLN3-253ENST00000636977 C12orf60Q5U649 245 aa16.8■□□□□ 0.28
CLN3-253ENST00000636977 WWC2Q6AWC2 1192 aa16.8■□□□□ 0.28
CLN3-253ENST00000636977 CHP1Q99653 195 aa16.8■□□□□ 0.28
CLN3-253ENST00000636977 MKRN1Q9UHC7 482 aaKnown RBP16.8■□□□□ 0.28
CLN3-253ENST00000636977 COL22A1Q8NFW1 1626 aaPredicted RBP16.8■□□□□ 0.28
CLN3-253ENST00000636977 USP5P45974 858 aa16.8■□□□□ 0.28
CLN3-253ENST00000636977 NUP88Q99567 741 aaPredicted RBP16.8■□□□□ 0.28
CLN3-253ENST00000636977 ABHD10Q9NUJ1 306 aa16.8■□□□□ 0.28
CLN3-253ENST00000636977 TFR2Q9UP52 801 aa16.8■□□□□ 0.28
CLN3-253ENST00000636977 NRAPQ86VF7 1730 aa16.8■□□□□ 0.28
CLN3-253ENST00000636977 TRAPPC10P48553 1259 aa16.8■□□□□ 0.28
CLN3-253ENST00000636977 HEATR3Q7Z4Q2 680 aa16.8■□□□□ 0.28
CLN3-253ENST00000636977 SLC35F6Q8N357 371 aa16.8■□□□□ 0.28
CLN3-253ENST00000636977 TRIM10Q9UDY6 481 aa16.8■□□□□ 0.28
CLN3-253ENST00000636977 PCDHA6Q9UN73 950 aa16.8■□□□□ 0.28
CLN3-253ENST00000636977 PCDHA4Q9UN74 947 aa16.8■□□□□ 0.28
CLN3-253ENST00000636977 PCDHA8Q9Y5H6 950 aa16.8■□□□□ 0.28
CLN3-253ENST00000636977 LRRC10BA6NIK2 292 aa16.79■□□□□ 0.28
CLN3-253ENST00000636977 M0R2N6 131 aa16.79■□□□□ 0.28
CLN3-253ENST00000636977 GNPATO15228 680 aa16.79■□□□□ 0.28
CLN3-253ENST00000636977 KIF5BP33176 963 aa16.79■□□□□ 0.28
CLN3-253ENST00000636977 GPR161Q8N6U8 529 aaKnown RBP16.79■□□□□ 0.28
CLN3-253ENST00000636977 TGFBRAP1Q8WUH2 860 aa16.79■□□□□ 0.28
CLN3-253ENST00000636977 SLF1Q9BQI6 1058 aa16.79■□□□□ 0.28
CLN3-253ENST00000636977 IRS2Q9Y4H2 1338 aa16.79■□□□□ 0.28
CLN3-253ENST00000636977 NFIXQ14938 502 aa16.79■□□□□ 0.28
CLN3-253ENST00000636977 DISC1Q9NRI5 854 aa16.79■□□□□ 0.28
CLN3-253ENST00000636977 LAMB1P07942 1786 aa16.79■□□□□ 0.28
CLN3-253ENST00000636977 UBXN1Q04323 297 aa16.78■□□□□ 0.28
CLN3-253ENST00000636977 CNGA4Q8IV77 575 aa16.78■□□□□ 0.28
CLN3-253ENST00000636977 NAA15Q9BXJ9 866 aaKnown RBP16.78■□□□□ 0.28
CLN3-253ENST00000636977 MKNK2Q9HBH9 465 aa16.78■□□□□ 0.28
CLN3-253ENST00000636977 STX8Q9UNK0 236 aa16.78■□□□□ 0.28
CLN3-253ENST00000636977 KIF5CO60282 957 aa16.78■□□□□ 0.28
CLN3-253ENST00000636977 KRT9P35527 623 aa16.78■□□□□ 0.28
CLN3-253ENST00000636977 TNNT3P45378 269 aaPredicted RBP16.78■□□□□ 0.28
CLN3-253ENST00000636977 RASSF8Q8NHQ8 419 aa16.78■□□□□ 0.28
CLN3-253ENST00000636977 NARFQ9UHQ1 456 aa16.78■□□□□ 0.28
CLN3-253ENST00000636977 LONP1P36776 959 aaKnown RBP16.77■□□□□ 0.28
CLN3-253ENST00000636977 ARHGAP25P42331 645 aa16.77■□□□□ 0.28
CLN3-253ENST00000636977 MAPKAPK5Q8IW41 473 aa16.77■□□□□ 0.28
CLN3-253ENST00000636977 ANKRD2Q9GZV1 360 aa16.77■□□□□ 0.28
CLN3-253ENST00000636977 ANKIB1Q9P2G1 1089 aa16.77■□□□□ 0.28
CLN3-253ENST00000636977 ITIH6Q6UXX5 1313 aa16.77■□□□□ 0.28
CLN3-253ENST00000636977 CCDC194A0A1B0GVG4 234 aa16.77■□□□□ 0.28
CLN3-253ENST00000636977 PES1O00541 588 aaKnown RBP16.77■□□□□ 0.28
CLN3-253ENST00000636977 NKRFO15226 690 aaKnown RBP eCLIP16.77■□□□□ 0.28
CLN3-253ENST00000636977 PARP1P09874 1014 aaKnown RBP16.77■□□□□ 0.28
CLN3-253ENST00000636977 ARL6IP4Q66PJ3 421 aaKnown RBP16.77■□□□□ 0.28
CLN3-253ENST00000636977 GOLGA1Q92805 767 aa16.77■□□□□ 0.28
CLN3-253ENST00000636977 KLRC4O43908 158 aa16.77■□□□□ 0.27
CLN3-253ENST00000636977 CALML3P27482 149 aa16.77■□□□□ 0.27
CLN3-253ENST00000636977 CHMP4BP1P59074 171 aa16.77■□□□□ 0.27
CLN3-253ENST00000636977 GRM4Q14833 912 aa16.77■□□□□ 0.27
CLN3-253ENST00000636977 KIF4BQ2VIQ3 1234 aa16.77■□□□□ 0.27
CLN3-253ENST00000636977 DTHD1Q6ZMT9 781 aa16.77■□□□□ 0.27
CLN3-253ENST00000636977 BARGINQ6ZT62 677 aa16.77■□□□□ 0.27
CLN3-253ENST00000636977 ADSSL1Q8N142 457 aa16.77■□□□□ 0.27
CLN3-253ENST00000636977 RABGGTAQ92696 567 aa16.77■□□□□ 0.27
CLN3-253ENST00000636977 REXO2Q9Y3B8 237 aaKnown RBP16.77■□□□□ 0.27
CLN3-253ENST00000636977 TTC26A0AVF1 554 aa16.76■□□□□ 0.27
CLN3-253ENST00000636977 STXBP3O00186 592 aa16.76■□□□□ 0.27
CLN3-253ENST00000636977 LDHBP07195 334 aaKnown RBP16.76■□□□□ 0.27
CLN3-253ENST00000636977 TSPY3P0CV98 308 aa16.76■□□□□ 0.27
CLN3-253ENST00000636977 TSPY8P0CW00 308 aa16.76■□□□□ 0.27
CLN3-253ENST00000636977 FECHP22830 423 aa16.76■□□□□ 0.27
CLN3-253ENST00000636977 DGKHQ86XP1 1220 aa16.76■□□□□ 0.27
CLN3-253ENST00000636977 PNKPQ96T60 521 aa16.76■□□□□ 0.27
CLN3-253ENST00000636977 TMEM47Q9BQJ4 181 aa16.76■□□□□ 0.27
CLN3-253ENST00000636977 ANKZF1Q9H8Y5 726 aa16.76■□□□□ 0.27
CLN3-253ENST00000636977 AHDC1Q5TGY3 1603 aaPredicted RBP16.76■□□□□ 0.27
CLN3-253ENST00000636977 ZPR1O75312 459 aa16.76■□□□□ 0.27
CLN3-253ENST00000636977 TPM1P09493 284 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms