RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 NPY5RQ15761 445 aa17.02■□□□□ 0.32
SHKBP1-211ENST00000595945 ZYXQ15942 572 aaKnown RBP17.02■□□□□ 0.32
SHKBP1-211ENST00000595945 SH3D19Q5HYK7 790 aa17.02■□□□□ 0.32
SHKBP1-211ENST00000595945 SYDE2Q5VT97 1194 aa17.02■□□□□ 0.32
SHKBP1-211ENST00000595945 WWC2Q6AWC2 1192 aa17.02■□□□□ 0.32
SHKBP1-211ENST00000595945 CHADLQ6NUI6 762 aa17.02■□□□□ 0.32
SHKBP1-211ENST00000595945 FERMT3Q86UX7 667 aa17.02■□□□□ 0.32
SHKBP1-211ENST00000595945 VPS54Q9P1Q0 977 aa17.02■□□□□ 0.32
SHKBP1-211ENST00000595945 COL11A1P12107 1806 aaPredicted RBP17.01■□□□□ 0.31
SHKBP1-211ENST00000595945 PNMA6FA0A0J9YX94 578 aa17.01■□□□□ 0.31
SHKBP1-211ENST00000595945 SPDYE5A6NIY4 337 aa17.01■□□□□ 0.31
SHKBP1-211ENST00000595945 KIF28PB7ZC32 967 aa17.01■□□□□ 0.31
SHKBP1-211ENST00000595945 hCG_1984214I3L0E3 225 aa17.01■□□□□ 0.31
SHKBP1-211ENST00000595945 STXBP3O00186 592 aa17.01■□□□□ 0.31
SHKBP1-211ENST00000595945 BAG4O95429 457 aaKnown RBP17.01■□□□□ 0.31
SHKBP1-211ENST00000595945 ITGBL1O95965 494 aaPredicted RBP17.01■□□□□ 0.31
SHKBP1-211ENST00000595945 FKBP1BP68106 108 aa17.01■□□□□ 0.31
SHKBP1-211ENST00000595945 ERO1BQ86YB8 467 aa17.01■□□□□ 0.31
SHKBP1-211ENST00000595945 ZNF713Q8N859 430 aaPredicted RBP17.01■□□□□ 0.31
SHKBP1-211ENST00000595945 PIBF1Q8WXW3 757 aa17.01■□□□□ 0.31
SHKBP1-211ENST00000595945 CLMNQ96JQ2 1002 aa17.01■□□□□ 0.31
SHKBP1-211ENST00000595945 ZSCAN16Q9H4T2 348 aaPredicted RBP17.01■□□□□ 0.31
SHKBP1-211ENST00000595945 VAT1LQ9HCJ6 419 aa17.01■□□□□ 0.31
SHKBP1-211ENST00000595945 BARHL2Q9NY43 387 aa17.01■□□□□ 0.31
SHKBP1-211ENST00000595945 KCNJ14Q9UNX9 436 aa17.01■□□□□ 0.31
SHKBP1-211ENST00000595945 ZBTB5O15062 677 aa17■□□□□ 0.31
SHKBP1-211ENST00000595945 PPP1R11O60927 126 aaPredicted RBP17■□□□□ 0.31
SHKBP1-211ENST00000595945 XBP1P17861 261 aa17■□□□□ 0.31
SHKBP1-211ENST00000595945 VCAM1P19320 739 aa17■□□□□ 0.31
SHKBP1-211ENST00000595945 U2AF2P26368 475 aaKnown RBP eCLIP17■□□□□ 0.31
SHKBP1-211ENST00000595945 PPATQ06203 517 aa17■□□□□ 0.31
SHKBP1-211ENST00000595945 TTLL12Q14166 644 aaPredicted RBP17■□□□□ 0.31
SHKBP1-211ENST00000595945 TYW1BQ6NUM6 668 aa17■□□□□ 0.31
SHKBP1-211ENST00000595945 FAM160B2Q86V87 743 aa17■□□□□ 0.31
SHKBP1-211ENST00000595945 CHURC1Q8WUH1 139 aa17■□□□□ 0.31
SHKBP1-211ENST00000595945 CNKSR2Q8WXI2 1034 aa17■□□□□ 0.31
SHKBP1-211ENST00000595945 GPKOWQ92917 476 aaPredicted RBP eCLIP17■□□□□ 0.31
SHKBP1-211ENST00000595945 ELP3Q9H9T3 547 aa17■□□□□ 0.31
SHKBP1-211ENST00000595945 SEC63Q9UGP8 760 aaKnown RBP17■□□□□ 0.31
SHKBP1-211ENST00000595945 FEM1BQ9UK73 627 aa17■□□□□ 0.31
SHKBP1-211ENST00000595945 PRR12Q9ULL5 1215 aa17■□□□□ 0.31
SHKBP1-211ENST00000595945 TRIM75PA6NK02 468 aa16.99■□□□□ 0.31
SHKBP1-211ENST00000595945 STAT2P52630 851 aa16.99■□□□□ 0.31
SHKBP1-211ENST00000595945 DGKZQ13574 1117 aa16.99■□□□□ 0.31
SHKBP1-211ENST00000595945 CDC37Q16543 378 aaPredicted RBP16.99■□□□□ 0.31
SHKBP1-211ENST00000595945 QRICH1Q2TAL8 776 aa16.99■□□□□ 0.31
SHKBP1-211ENST00000595945 BRAPQ7Z569 592 aa16.99■□□□□ 0.31
SHKBP1-211ENST00000595945 HOMER1Q86YM7 354 aa16.99■□□□□ 0.31
SHKBP1-211ENST00000595945 RBM46Q8TBY0 533 aaKnown RBP16.99■□□□□ 0.31
SHKBP1-211ENST00000595945 CHAMP1Q96JM3 812 aa16.99■□□□□ 0.31
SHKBP1-211ENST00000595945 GBP4Q96PP9 640 aa16.99■□□□□ 0.31
SHKBP1-211ENST00000595945 GBA2Q9HCG7 927 aaPredicted RBP16.99■□□□□ 0.31
SHKBP1-211ENST00000595945 ISY1Q9ULR0 285 aaKnown RBP16.99■□□□□ 0.31
SHKBP1-211ENST00000595945 KCNH4Q9UQ05 1017 aa16.99■□□□□ 0.31
SHKBP1-211ENST00000595945 ATP6V1DQ9Y5K8 247 aa16.99■□□□□ 0.31
SHKBP1-211ENST00000595945 ESYT2A0FGR8 921 aa16.98■□□□□ 0.31
SHKBP1-211ENST00000595945 CXCL11O14625 94 aa16.98■□□□□ 0.31
SHKBP1-211ENST00000595945 HMGCS2P54868 508 aa16.98■□□□□ 0.31
SHKBP1-211ENST00000595945 PPIL2Q13356 520 aa16.98■□□□□ 0.31
SHKBP1-211ENST00000595945 MCTP1Q6DN14 999 aa16.98■□□□□ 0.31
SHKBP1-211ENST00000595945 PPP1R18Q6NYC8 613 aa16.98■□□□□ 0.31
SHKBP1-211ENST00000595945 HEATR3Q7Z4Q2 680 aa16.98■□□□□ 0.31
SHKBP1-211ENST00000595945 DIS3L2Q8IYB7 885 aaKnown RBP16.98■□□□□ 0.31
SHKBP1-211ENST00000595945 DAGLBQ8NCG7 672 aa16.98■□□□□ 0.31
SHKBP1-211ENST00000595945 RANBP17Q9H2T7 1088 aaKnown RBP16.98■□□□□ 0.31
SHKBP1-211ENST00000595945 FOXP1Q9H334 677 aaPredicted RBP16.98■□□□□ 0.31
SHKBP1-211ENST00000595945 BTBD18B2RXH4 712 aa16.97■□□□□ 0.31
SHKBP1-211ENST00000595945 CALML3P27482 149 aa16.97■□□□□ 0.31
SHKBP1-211ENST00000595945 MCM4P33991 863 aa16.97■□□□□ 0.31
SHKBP1-211ENST00000595945 SAFBQ15424 915 aaKnown RBP eCLIP16.97■□□□□ 0.31
SHKBP1-211ENST00000595945 GALNT17Q6IS24 598 aa16.97■□□□□ 0.31
SHKBP1-211ENST00000595945 CCDC148Q8NFR7 591 aa16.97■□□□□ 0.31
SHKBP1-211ENST00000595945 OXER1Q8TDS5 423 aa16.97■□□□□ 0.31
SHKBP1-211ENST00000595945 TNFRSF25Q93038 417 aa16.97■□□□□ 0.31
SHKBP1-211ENST00000595945 ZMYND12Q9H0C1 365 aa16.97■□□□□ 0.31
SHKBP1-211ENST00000595945 FBXO28Q9NVF7 368 aa16.97■□□□□ 0.31
SHKBP1-211ENST00000595945 A0A0G2JMZ2 1700 aa16.96■□□□□ 0.31
SHKBP1-211ENST00000595945 A0A0G2JLL6 359 aaPredicted RBP16.96■□□□□ 0.31
SHKBP1-211ENST00000595945 M0R2N6 131 aa16.96■□□□□ 0.31
SHKBP1-211ENST00000595945 KIF3CO14782 793 aa16.96■□□□□ 0.31
SHKBP1-211ENST00000595945 ADAMTS3O15072 1205 aa16.96■□□□□ 0.31
SHKBP1-211ENST00000595945 CELF2O95319 508 aaKnown RBP16.96■□□□□ 0.31
SHKBP1-211ENST00000595945 KRT2P35908 639 aa16.96■□□□□ 0.31
SHKBP1-211ENST00000595945 NFKBIBQ15653 356 aa16.96■□□□□ 0.31
SHKBP1-211ENST00000595945 FAM173BQ6P4H8 233 aa16.96■□□□□ 0.31
SHKBP1-211ENST00000595945 PRRT2Q7Z6L0 340 aaPredicted RBP16.96■□□□□ 0.31
SHKBP1-211ENST00000595945 CCDC12Q8WUD4 166 aaPredicted RBP16.96■□□□□ 0.31
SHKBP1-211ENST00000595945 OTUD5Q96G74 571 aa16.96■□□□□ 0.31
SHKBP1-211ENST00000595945 SLF1Q9BQI6 1058 aa16.96■□□□□ 0.31
SHKBP1-211ENST00000595945 RPAP3Q9H6T3 665 aaPredicted RBP16.96■□□□□ 0.31
SHKBP1-211ENST00000595945 ZNF408Q9H9D4 720 aa16.96■□□□□ 0.31
SHKBP1-211ENST00000595945 TMOD4Q9NZQ9 345 aa16.96■□□□□ 0.31
SHKBP1-211ENST00000595945 PASKQ96RG2 1323 aa16.96■□□□□ 0.3
SHKBP1-211ENST00000595945 RBBP6Q7Z6E9 1792 aaKnown RBP16.95■□□□□ 0.3
SHKBP1-211ENST00000595945 IRF6O14896 467 aa16.95■□□□□ 0.3
SHKBP1-211ENST00000595945 GJA5P36382 358 aa16.95■□□□□ 0.3
SHKBP1-211ENST00000595945 NAPAP54920 295 aa16.95■□□□□ 0.3
SHKBP1-211ENST00000595945 NLRP5P59047 1200 aa16.95■□□□□ 0.3
SHKBP1-211ENST00000595945 DNM1Q05193 864 aaKnown RBP16.95■□□□□ 0.3
SHKBP1-211ENST00000595945 IKQ13123 557 aaPredicted RBP16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms