RNA–Protein interactions for RNA: ENST00000560861.1

SNX1-212, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-212ENST00000560861 BMP3P12645 472 aa13.02□□□□□ -0.33
SNX1-212ENST00000560861 KRT85P78386 507 aa13.02□□□□□ -0.33
SNX1-212ENST00000560861 NBR1Q14596 966 aa13.02□□□□□ -0.33
SNX1-212ENST00000560861 KRT26Q7Z3Y9 468 aa13.02□□□□□ -0.33
SNX1-212ENST00000560861 USP48Q86UV5 1035 aa13.02□□□□□ -0.33
SNX1-212ENST00000560861 PNMA8AQ86V59 439 aaPredicted RBP13.02□□□□□ -0.33
SNX1-212ENST00000560861 ZNF713Q8N859 430 aaPredicted RBP13.02□□□□□ -0.33
SNX1-212ENST00000560861 PIBF1Q8WXW3 757 aa13.02□□□□□ -0.33
SNX1-212ENST00000560861 CDCA5Q96FF9 252 aa13.02□□□□□ -0.33
SNX1-212ENST00000560861 USP28Q96RU2 1077 aa13.02□□□□□ -0.33
SNX1-212ENST00000560861 WRNIP1Q96S55 665 aa13.02□□□□□ -0.33
SNX1-212ENST00000560861 SH2D4AQ9H788 454 aa13.02□□□□□ -0.33
SNX1-212ENST00000560861 GPBP1L1Q9HC44 474 aaPredicted RBP13.02□□□□□ -0.33
SNX1-212ENST00000560861 GDPD2Q9HCC8 539 aa13.02□□□□□ -0.33
SNX1-212ENST00000560861 GOPCQ9HD26 462 aa13.02□□□□□ -0.33
SNX1-212ENST00000560861 SMCHD1A6NHR9 2005 aa13.01□□□□□ -0.33
SNX1-212ENST00000560861 PNMA6FA0A0J9YX94 578 aa13.01□□□□□ -0.33
SNX1-212ENST00000560861 ESYT2A0FGR8 921 aa13.01□□□□□ -0.33
SNX1-212ENST00000560861 USP17L10C9JJH3 530 aa13.01□□□□□ -0.33
SNX1-212ENST00000560861 GOLGA6L22H0YM25 854 aa13.01□□□□□ -0.33
SNX1-212ENST00000560861 PRPF40AO75400 957 aaKnown RBP13.01□□□□□ -0.33
SNX1-212ENST00000560861 XBP1P17861 261 aa13.01□□□□□ -0.33
SNX1-212ENST00000560861 PTPRAP18433 802 aa13.01□□□□□ -0.33
SNX1-212ENST00000560861 SLC16A2P36021 539 aa13.01□□□□□ -0.33
SNX1-212ENST00000560861 NASPP49321 788 aaPredicted RBP13.01□□□□□ -0.33
SNX1-212ENST00000560861 NR5A1Q13285 461 aa13.01□□□□□ -0.33
SNX1-212ENST00000560861 MAP3K11Q16584 847 aa13.01□□□□□ -0.33
SNX1-212ENST00000560861 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.01□□□□□ -0.33
SNX1-212ENST00000560861 NOSTRINQ8IVI9 506 aa13.01□□□□□ -0.33
SNX1-212ENST00000560861 LEO1Q8WVC0 666 aaPredicted RBP13.01□□□□□ -0.33
SNX1-212ENST00000560861 ZKSCAN4Q969J2 545 aaPredicted RBP13.01□□□□□ -0.33
SNX1-212ENST00000560861 ZNF396Q96N95 335 aaPredicted RBP13.01□□□□□ -0.33
SNX1-212ENST00000560861 FTOQ9C0B1 505 aaKnown RBP eCLIP13.01□□□□□ -0.33
SNX1-212ENST00000560861 RTEL1Q9NZ71 1219 aa13.01□□□□□ -0.33
SNX1-212ENST00000560861 TFIP11Q9UBB9 837 aaKnown RBP13.01□□□□□ -0.33
SNX1-212ENST00000560861 RCOR1Q9UKL0 485 aa13.01□□□□□ -0.33
SNX1-212ENST00000560861 SNCAIPQ9Y6H5 919 aa13.01□□□□□ -0.33
SNX1-212ENST00000560861 LOC285556D6RIA3 1793 aa13.01□□□□□ -0.33
SNX1-212ENST00000560861 ZBTB5O15062 677 aa13□□□□□ -0.33
SNX1-212ENST00000560861 FIBPO43427 364 aa13□□□□□ -0.33
SNX1-212ENST00000560861 GADD45BO75293 160 aaPredicted RBP13□□□□□ -0.33
SNX1-212ENST00000560861 POTEIP0CG38 1075 aa13□□□□□ -0.33
SNX1-212ENST00000560861 POTEJP0CG39 1038 aa13□□□□□ -0.33
SNX1-212ENST00000560861 CALML3P27482 149 aa13□□□□□ -0.33
SNX1-212ENST00000560861 KRT2P35908 639 aa13□□□□□ -0.33
SNX1-212ENST00000560861 TOB1P50616 345 aaPredicted RBP13□□□□□ -0.33
SNX1-212ENST00000560861 MAP3K9P80192 1104 aa13□□□□□ -0.33
SNX1-212ENST00000560861 SAFBQ15424 915 aaKnown RBP eCLIP13□□□□□ -0.33
SNX1-212ENST00000560861 EARS2Q5JPH6 523 aaKnown RBP13□□□□□ -0.33
SNX1-212ENST00000560861 FAM83BQ5T0W9 1011 aa13□□□□□ -0.33
SNX1-212ENST00000560861 SYDE2Q5VT97 1194 aa13□□□□□ -0.33
SNX1-212ENST00000560861 GALNT17Q6IS24 598 aa13□□□□□ -0.33
SNX1-212ENST00000560861 PPP1R18Q6NYC8 613 aa13□□□□□ -0.33
SNX1-212ENST00000560861 CCDC148Q8NFR7 591 aa13□□□□□ -0.33
SNX1-212ENST00000560861 C12orf42Q96LP6 360 aa13□□□□□ -0.33
SNX1-212ENST00000560861 SCAND2PQ9GZW5 306 aaPredicted RBP13□□□□□ -0.33
SNX1-212ENST00000560861 ZMYND12Q9H0C1 365 aa13□□□□□ -0.33
SNX1-212ENST00000560861 VAT1LQ9HCJ6 419 aa13□□□□□ -0.33
SNX1-212ENST00000560861 EMILIN3Q9NT22 766 aa13□□□□□ -0.33
SNX1-212ENST00000560861 POLR3EQ9NVU0 708 aa13□□□□□ -0.33
SNX1-212ENST00000560861 FAM205CA6NFA0 338 aa12.99□□□□□ -0.33
SNX1-212ENST00000560861 TMEM232C9JQI7 657 aa12.99□□□□□ -0.33
SNX1-212ENST00000560861 KIF3CO14782 793 aa12.99□□□□□ -0.33
SNX1-212ENST00000560861 TRAK2O60296 914 aa12.99□□□□□ -0.33
SNX1-212ENST00000560861 PTPAQ15257 358 aa12.99□□□□□ -0.33
SNX1-212ENST00000560861 QRICH1Q2TAL8 776 aa12.99□□□□□ -0.33
SNX1-212ENST00000560861 NOM1Q5C9Z4 860 aaKnown RBP12.99□□□□□ -0.33
SNX1-212ENST00000560861 HEATR3Q7Z4Q2 680 aa12.99□□□□□ -0.33
SNX1-212ENST00000560861 HOMER1Q86YM7 354 aa12.99□□□□□ -0.33
SNX1-212ENST00000560861 SPICE1Q8N0Z3 855 aa12.99□□□□□ -0.33
SNX1-212ENST00000560861 GPT2Q8TD30 523 aa12.99□□□□□ -0.33
SNX1-212ENST00000560861 LPAR1Q92633 364 aa12.99□□□□□ -0.33
SNX1-212ENST00000560861 SEC63Q9UGP8 760 aaKnown RBP12.99□□□□□ -0.33
SNX1-212ENST00000560861 CFAP45Q9UL16 551 aa12.99□□□□□ -0.33
SNX1-212ENST00000560861 PRR12Q9ULL5 1215 aa12.99□□□□□ -0.33
SNX1-212ENST00000560861 PCDHA4Q9UN74 947 aa12.99□□□□□ -0.33
SNX1-212ENST00000560861 WDR46O15213 610 aaKnown RBP12.98□□□□□ -0.33
SNX1-212ENST00000560861 YEATS4O95619 227 aa12.98□□□□□ -0.33
SNX1-212ENST00000560861 NCLP19338 710 aaKnown RBP12.98□□□□□ -0.33
SNX1-212ENST00000560861 BACE1P56817 501 aa12.98□□□□□ -0.33
SNX1-212ENST00000560861 NLRP5P59047 1200 aa12.98□□□□□ -0.33
SNX1-212ENST00000560861 VGLL4Q14135 290 aa12.98□□□□□ -0.33
SNX1-212ENST00000560861 CDC37Q16543 378 aaPredicted RBP12.98□□□□□ -0.33
SNX1-212ENST00000560861 SKOR2Q2VWA4 1001 aaPredicted RBP12.98□□□□□ -0.33
SNX1-212ENST00000560861 BLIDQ8IZY5 108 aa12.98□□□□□ -0.33
SNX1-212ENST00000560861 LINC00301Q8NCQ3 95 aa12.98□□□□□ -0.33
SNX1-212ENST00000560861 ZNF280CQ8ND82 737 aa12.98□□□□□ -0.33
SNX1-212ENST00000560861 PGBD1Q96JS3 809 aa12.98□□□□□ -0.33
SNX1-212ENST00000560861 ANP32EQ9BTT0 268 aa12.98□□□□□ -0.33
SNX1-212ENST00000560861 AS3MTQ9HBK9 375 aa12.98□□□□□ -0.33
SNX1-212ENST00000560861 PICK1Q9NRD5 415 aa12.98□□□□□ -0.33
SNX1-212ENST00000560861 AFG3L2Q9Y4W6 797 aa12.98□□□□□ -0.33
SNX1-212ENST00000560861 MORC2Q9Y6X9 1032 aaPredicted RBP12.98□□□□□ -0.33
SNX1-212ENST00000560861 NAPAP54920 295 aa12.97□□□□□ -0.33
SNX1-212ENST00000560861 SPP2Q13103 211 aa12.97□□□□□ -0.33
SNX1-212ENST00000560861 DGKZQ13574 1117 aa12.97□□□□□ -0.33
SNX1-212ENST00000560861 MTMR2Q13614 643 aa12.97□□□□□ -0.33
SNX1-212ENST00000560861 ZYXQ15942 572 aaKnown RBP12.97□□□□□ -0.33
SNX1-212ENST00000560861 CSPP1Q1MSJ5 1256 aa12.97□□□□□ -0.33
SNX1-212ENST00000560861 KLHL40Q2TBA0 621 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms