RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 CCAR1Q8IX12 1150 aaKnown RBP10.99□□□□□ -0.65
LDLR-211ENST00000560173 PNMA1Q8ND90 353 aa10.99□□□□□ -0.65
LDLR-211ENST00000560173 SOCS4Q8WXH5 440 aa10.99□□□□□ -0.65
LDLR-211ENST00000560173 USP6NLQ92738 828 aa10.99□□□□□ -0.65
LDLR-211ENST00000560173 KAT14Q9H8E8 782 aa10.99□□□□□ -0.65
LDLR-211ENST00000560173 SLC38A10Q9HBR0 1119 aa10.99□□□□□ -0.65
LDLR-211ENST00000560173 ISY1Q9ULR0 285 aaKnown RBP10.99□□□□□ -0.65
LDLR-211ENST00000560173 MTMR7Q9Y216 660 aa10.99□□□□□ -0.65
LDLR-211ENST00000560173 PLXNB2O15031 1838 aa10.99□□□□□ -0.65
LDLR-211ENST00000560173 COL11A1P12107 1806 aaPredicted RBP10.98□□□□□ -0.65
LDLR-211ENST00000560173 SLC15A5A6NIM6 579 aa10.98□□□□□ -0.65
LDLR-211ENST00000560173 ATP2A1O14983 1001 aa10.98□□□□□ -0.65
LDLR-211ENST00000560173 ADCY3O60266 1144 aa10.98□□□□□ -0.65
LDLR-211ENST00000560173 ZBED4O75132 1171 aa10.98□□□□□ -0.65
LDLR-211ENST00000560173 ERCC3P19447 782 aa10.98□□□□□ -0.65
LDLR-211ENST00000560173 GRK4P32298 578 aa10.98□□□□□ -0.65
LDLR-211ENST00000560173 STAT3P40763 770 aa10.98□□□□□ -0.65
LDLR-211ENST00000560173 ZNF543Q08ER8 600 aa10.98□□□□□ -0.65
LDLR-211ENST00000560173 IKQ13123 557 aaPredicted RBP10.98□□□□□ -0.65
LDLR-211ENST00000560173 PLS1Q14651 629 aa10.98□□□□□ -0.65
LDLR-211ENST00000560173 IFIT1BQ5T764 474 aaKnown RBP10.98□□□□□ -0.65
LDLR-211ENST00000560173 WDR78Q5VTH9 848 aa10.98□□□□□ -0.65
LDLR-211ENST00000560173 RNF20Q5VTR2 975 aa10.98□□□□□ -0.65
LDLR-211ENST00000560173 BTNL9Q6UXG8 535 aa10.98□□□□□ -0.65
LDLR-211ENST00000560173 RIOX2Q8IUF8 465 aa10.98□□□□□ -0.65
LDLR-211ENST00000560173 SLAIN1Q8ND83 568 aa10.98□□□□□ -0.65
LDLR-211ENST00000560173 SH3TC2Q8TF17 1288 aa10.98□□□□□ -0.65
LDLR-211ENST00000560173 CHURC1Q8WUH1 139 aa10.98□□□□□ -0.65
LDLR-211ENST00000560173 ZNF333Q96JL9 665 aa10.98□□□□□ -0.65
LDLR-211ENST00000560173 NUDT12Q9BQG2 462 aa10.98□□□□□ -0.65
LDLR-211ENST00000560173 TEX13BQ9BXU2 312 aa10.98□□□□□ -0.65
LDLR-211ENST00000560173 MROH8Q9H579 483 aa10.98□□□□□ -0.65
LDLR-211ENST00000560173 CWC22Q9HCG8 908 aaKnown RBP10.98□□□□□ -0.65
LDLR-211ENST00000560173 FRMPD2Q68DX3 1309 aaPredicted RBP10.98□□□□□ -0.65
LDLR-211ENST00000560173 ZNF236Q9UL36 1845 aa10.98□□□□□ -0.65
LDLR-211ENST00000560173 IFIT3O14879 490 aaKnown RBP10.97□□□□□ -0.65
LDLR-211ENST00000560173 REC8O95072 547 aa10.97□□□□□ -0.65
LDLR-211ENST00000560173 SLC25A27O95847 323 aa10.97□□□□□ -0.65
LDLR-211ENST00000560173 FDX1P10109 184 aa10.97□□□□□ -0.65
LDLR-211ENST00000560173 XRCC5P13010 732 aaKnown RBP10.97□□□□□ -0.65
LDLR-211ENST00000560173 ELNP15502 786 aa10.97□□□□□ -0.65
LDLR-211ENST00000560173 PTPREP23469 700 aa10.97□□□□□ -0.65
LDLR-211ENST00000560173 COPB2P35606 906 aa10.97□□□□□ -0.65
LDLR-211ENST00000560173 RGS2P41220 211 aa10.97□□□□□ -0.65
LDLR-211ENST00000560173 OAZ1P54368 228 aa10.97□□□□□ -0.65
LDLR-211ENST00000560173 MAP2K5Q13163 448 aa10.97□□□□□ -0.65
LDLR-211ENST00000560173 COL9A3Q14050 684 aaPredicted RBP10.97□□□□□ -0.65
LDLR-211ENST00000560173 GRB14Q14449 540 aa10.97□□□□□ -0.65
LDLR-211ENST00000560173 TSGA10IPQ3SY00 556 aa10.97□□□□□ -0.65
LDLR-211ENST00000560173 SNRNP48Q6IEG0 339 aaKnown RBP10.97□□□□□ -0.65
LDLR-211ENST00000560173 TTBK2Q6IQ55 1244 aa10.97□□□□□ -0.65
LDLR-211ENST00000560173 CHST3Q7LGC8 479 aa10.97□□□□□ -0.65
LDLR-211ENST00000560173 NCAPG2Q86XI2 1143 aa10.97□□□□□ -0.65
LDLR-211ENST00000560173 RASEFQ8IZ41 740 aa10.97□□□□□ -0.65
LDLR-211ENST00000560173 PXYLP1Q8TE99 480 aa10.97□□□□□ -0.65
LDLR-211ENST00000560173 KCNB2Q92953 911 aa10.97□□□□□ -0.65
LDLR-211ENST00000560173 APBA2Q99767 749 aa10.97□□□□□ -0.65
LDLR-211ENST00000560173 GPCPD1Q9NPB8 672 aa10.97□□□□□ -0.65
LDLR-211ENST00000560173 PRR12Q9ULL5 1215 aa10.97□□□□□ -0.65
LDLR-211ENST00000560173 IVNS1ABPQ9Y6Y0 642 aa10.97□□□□□ -0.65
LDLR-211ENST00000560173 ZNF536O15090 1300 aa10.96□□□□□ -0.65
LDLR-211ENST00000560173 PRC1O43663 620 aa10.96□□□□□ -0.65
LDLR-211ENST00000560173 STRNO43815 780 aa10.96□□□□□ -0.65
LDLR-211ENST00000560173 HOXC6P09630 235 aa10.96□□□□□ -0.65
LDLR-211ENST00000560173 CYP2B6P20813 491 aa10.96□□□□□ -0.65
LDLR-211ENST00000560173 MCM5P33992 734 aa10.96□□□□□ -0.65
LDLR-211ENST00000560173 WTAPQ15007 396 aa10.96□□□□□ -0.65
LDLR-211ENST00000560173 SART3Q15020 963 aaKnown RBP10.96□□□□□ -0.65
LDLR-211ENST00000560173 TMEM67Q5HYA8 995 aa10.96□□□□□ -0.65
LDLR-211ENST00000560173 GPATCH4Q5T3I0 446 aaKnown RBP10.96□□□□□ -0.65
LDLR-211ENST00000560173 SYDE2Q5VT97 1194 aa10.96□□□□□ -0.65
LDLR-211ENST00000560173 NBPF11Q86T75 865 aa10.96□□□□□ -0.65
LDLR-211ENST00000560173 ABRAQ8N0Z2 381 aa10.96□□□□□ -0.65
LDLR-211ENST00000560173 CPXCR1Q8N123 301 aa10.96□□□□□ -0.65
LDLR-211ENST00000560173 MTA3Q9BTC8 594 aa10.96□□□□□ -0.65
LDLR-211ENST00000560173 SENP2Q9HC62 589 aa10.96□□□□□ -0.65
LDLR-211ENST00000560173 RAVER2Q9HCJ3 691 aaKnown RBP10.96□□□□□ -0.65
LDLR-211ENST00000560173 COLQQ9Y215 455 aaPredicted RBP10.96□□□□□ -0.65
LDLR-211ENST00000560173 CTDP1Q9Y5B0 961 aaPredicted RBP10.96□□□□□ -0.65
LDLR-211ENST00000560173 ERICH2A1L162 156 aa10.95□□□□□ -0.66
LDLR-211ENST00000560173 EPB41L2O43491 1005 aaKnown RBP10.95□□□□□ -0.66
LDLR-211ENST00000560173 HMGCRP04035 888 aa10.95□□□□□ -0.66
LDLR-211ENST00000560173 INHAP05111 366 aa10.95□□□□□ -0.66
LDLR-211ENST00000560173 GOLGA8HP0CJ92 632 aa10.95□□□□□ -0.66
LDLR-211ENST00000560173 ZKSCAN1P17029 563 aaPredicted RBP10.95□□□□□ -0.66
LDLR-211ENST00000560173 ADORA2AP29274 412 aa10.95□□□□□ -0.66
LDLR-211ENST00000560173 HSPA4P34932 840 aa10.95□□□□□ -0.66
LDLR-211ENST00000560173 SLC16A2P36021 539 aa10.95□□□□□ -0.66
LDLR-211ENST00000560173 SNAP25P60880 206 aa10.95□□□□□ -0.66
LDLR-211ENST00000560173 ASPRV1Q53RT3 343 aa10.95□□□□□ -0.66
LDLR-211ENST00000560173 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.95□□□□□ -0.66
LDLR-211ENST00000560173 IGDCC4Q8TDY8 1250 aa10.95□□□□□ -0.66
LDLR-211ENST00000560173 TRIB2Q92519 343 aa10.95□□□□□ -0.66
LDLR-211ENST00000560173 RANBP17Q9H2T7 1088 aaKnown RBP10.95□□□□□ -0.66
LDLR-211ENST00000560173 LY9Q9HBG7 655 aa10.95□□□□□ -0.66
LDLR-211ENST00000560173 GPHNQ9NQX3 736 aaPredicted RBP10.95□□□□□ -0.66
LDLR-211ENST00000560173 RIPK3Q9Y572 518 aa10.95□□□□□ -0.66
LDLR-211ENST00000560173 WDR19Q8NEZ3 1342 aa10.94□□□□□ -0.66
LDLR-211ENST00000560173 DLL1O00548 723 aa10.94□□□□□ -0.66
LDLR-211ENST00000560173 SH2B2O14492 632 aaPredicted RBP10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms