RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 MYH13Q9UKX3 1938 aa19.71■□□□□ 0.75
SYNE3-202ENST00000553340 PCP11498 1178 aaKnown RBP19.71■□□□□ 0.75
SYNE3-202ENST00000553340 EEF1GP26641 437 aaKnown RBP19.71■□□□□ 0.75
SYNE3-202ENST00000553340 LONP1P36776 959 aaKnown RBP19.71■□□□□ 0.75
SYNE3-202ENST00000553340 IL6STP40189 918 aaPredicted RBP19.71■□□□□ 0.75
SYNE3-202ENST00000553340 STAT6P42226 847 aa19.71■□□□□ 0.75
SYNE3-202ENST00000553340 CKAP4Q07065 602 aaKnown RBP19.71■□□□□ 0.75
SYNE3-202ENST00000553340 PAPD7Q5XG87 772 aaKnown RBP19.71■□□□□ 0.75
SYNE3-202ENST00000553340 MMS19Q96T76 1030 aa19.71■□□□□ 0.75
SYNE3-202ENST00000553340 RSPH14Q9UHP6 348 aa19.71■□□□□ 0.75
SYNE3-202ENST00000553340 CAPN11Q9UMQ6 739 aa19.71■□□□□ 0.75
SYNE3-202ENST00000553340 DUOX1Q9NRD9 1551 aa19.71■□□□□ 0.75
SYNE3-202ENST00000553340 TARSL2A2RTX5 802 aaKnown RBP19.71■□□□□ 0.75
SYNE3-202ENST00000553340 PES1O00541 588 aaKnown RBP19.71■□□□□ 0.75
SYNE3-202ENST00000553340 RNF40O75150 1001 aa19.71■□□□□ 0.75
SYNE3-202ENST00000553340 ATP1A1P05023 1023 aaKnown RBP19.71■□□□□ 0.75
SYNE3-202ENST00000553340 ADSSL1Q8N142 457 aa19.71■□□□□ 0.75
SYNE3-202ENST00000553340 RNF216Q9NWF9 866 aaPredicted RBP19.71■□□□□ 0.75
SYNE3-202ENST00000553340 SCG2P13521 617 aa19.7■□□□□ 0.74
SYNE3-202ENST00000553340 HERVK_113P62684 666 aa19.7■□□□□ 0.74
SYNE3-202ENST00000553340 ZNF662Q6ZS27 426 aa19.7■□□□□ 0.74
SYNE3-202ENST00000553340 SRBD1Q8N5C6 995 aaKnown RBP19.7■□□□□ 0.74
SYNE3-202ENST00000553340 CYP2D7A0A087X1C5 515 aa19.7■□□□□ 0.74
SYNE3-202ENST00000553340 TRIM49BA6NDI0 452 aa19.7■□□□□ 0.74
SYNE3-202ENST00000553340 KRT86O43790 486 aa19.7■□□□□ 0.74
SYNE3-202ENST00000553340 CCDC152Q4G0S7 254 aa19.7■□□□□ 0.74
SYNE3-202ENST00000553340 SUSD4Q5VX71 490 aa19.7■□□□□ 0.74
SYNE3-202ENST00000553340 KIAA1328Q86T90 577 aa19.7■□□□□ 0.74
SYNE3-202ENST00000553340 AFAP1L1Q8TED9 768 aa19.7■□□□□ 0.74
SYNE3-202ENST00000553340 RIOK1Q9BRS2 568 aaKnown RBP19.7■□□□□ 0.74
SYNE3-202ENST00000553340 BRIP1Q9BX63 1249 aa19.7■□□□□ 0.74
SYNE3-202ENST00000553340 SYF2O95926 243 aaKnown RBP19.69■□□□□ 0.74
SYNE3-202ENST00000553340 FOXR1Q6PIV2 292 aa19.69■□□□□ 0.74
SYNE3-202ENST00000553340 WDR59Q6PJI9 974 aa19.69■□□□□ 0.74
SYNE3-202ENST00000553340 LRRC31Q6UY01 552 aa19.69■□□□□ 0.74
SYNE3-202ENST00000553340 ZNF507Q8TCN5 953 aa19.69■□□□□ 0.74
SYNE3-202ENST00000553340 ZFP91Q96JP5 570 aaPredicted RBP19.69■□□□□ 0.74
SYNE3-202ENST00000553340 THAP9Q9H5L6 903 aa19.69■□□□□ 0.74
SYNE3-202ENST00000553340 MAGEC2Q9UBF1 373 aaPredicted RBP19.69■□□□□ 0.74
SYNE3-202ENST00000553340 PDS5AQ29RF7 1337 aaKnown RBP19.69■□□□□ 0.74
SYNE3-202ENST00000553340 FGRP09769 529 aa19.69■□□□□ 0.74
SYNE3-202ENST00000553340 STIM1Q13586 685 aa19.69■□□□□ 0.74
SYNE3-202ENST00000553340 BRINP3Q76B58 766 aa19.69■□□□□ 0.74
SYNE3-202ENST00000553340 HPCAL4Q9UM19 191 aa19.69■□□□□ 0.74
SYNE3-202ENST00000553340 SRGAP2O75044 1071 aa19.68■□□□□ 0.74
SYNE3-202ENST00000553340 CHRNDQ07001 517 aa19.68■□□□□ 0.74
SYNE3-202ENST00000553340 COG1Q8WTW3 980 aa19.68■□□□□ 0.74
SYNE3-202ENST00000553340 JAKMIP2Q96AA8 810 aa19.68■□□□□ 0.74
SYNE3-202ENST00000553340 IPO7O95373 1038 aaKnown RBP19.68■□□□□ 0.74
SYNE3-202ENST00000553340 CYLC1P35663 651 aaPredicted RBP19.68■□□□□ 0.74
SYNE3-202ENST00000553340 DNM2P50570 870 aa19.68■□□□□ 0.74
SYNE3-202ENST00000553340 MAPK8IP2Q13387 824 aaPredicted RBP19.68■□□□□ 0.74
SYNE3-202ENST00000553340 PFKFB3Q16875 520 aaPredicted RBP19.68■□□□□ 0.74
SYNE3-202ENST00000553340 CAPZA3Q96KX2 299 aa19.68■□□□□ 0.74
SYNE3-202ENST00000553340 STRCP1A6NGW2 1772 aa19.67■□□□□ 0.74
SYNE3-202ENST00000553340 PRPF6O94906 941 aaKnown RBP19.67■□□□□ 0.74
SYNE3-202ENST00000553340 MEA1Q16626 185 aa19.67■□□□□ 0.74
SYNE3-202ENST00000553340 TRIM47Q96LD4 638 aa19.67■□□□□ 0.74
SYNE3-202ENST00000553340 DISC1Q9NRI5 854 aa19.67■□□□□ 0.74
SYNE3-202ENST00000553340 GNL3LQ9NVN8 582 aaKnown RBP19.67■□□□□ 0.74
SYNE3-202ENST00000553340 ZNHIT6Q9NWK9 470 aaKnown RBP19.67■□□□□ 0.74
SYNE3-202ENST00000553340 ITGB4P16144 1822 aa19.67■□□□□ 0.74
SYNE3-202ENST00000553340 SLIT2O94813 1529 aa19.67■□□□□ 0.74
SYNE3-202ENST00000553340 PSMA7O14818 248 aa19.67■□□□□ 0.74
SYNE3-202ENST00000553340 KCNB1Q14721 858 aa19.67■□□□□ 0.74
SYNE3-202ENST00000553340 TFR2Q9UP52 801 aa19.67■□□□□ 0.74
SYNE3-202ENST00000553340 CALML3P27482 149 aa19.66■□□□□ 0.74
SYNE3-202ENST00000553340 PMS1P54277 932 aaKnown RBP19.66■□□□□ 0.74
SYNE3-202ENST00000553340 EIF5P55010 431 aaKnown RBP19.66■□□□□ 0.74
SYNE3-202ENST00000553340 DYNLL1P63167 89 aaKnown RBP19.66■□□□□ 0.74
SYNE3-202ENST00000553340 RASSF8Q8NHQ8 419 aa19.66■□□□□ 0.74
SYNE3-202ENST00000553340 CAGE1Q8TC20 777 aa19.66■□□□□ 0.74
SYNE3-202ENST00000553340 NUP58Q9BVL2 599 aa19.66■□□□□ 0.74
SYNE3-202ENST00000553340 C4orf32Q8N8J7 132 aa19.66■□□□□ 0.74
SYNE3-202ENST00000553340 NOC3LQ8WTT2 800 aaKnown RBP19.66■□□□□ 0.74
SYNE3-202ENST00000553340 CRACR2AQ9BSW2 395 aa19.66■□□□□ 0.74
SYNE3-202ENST00000553340 EFCC1Q9HA90 598 aa19.66■□□□□ 0.74
SYNE3-202ENST00000553340 BCL9O00512 1426 aa19.66■□□□□ 0.74
SYNE3-202ENST00000553340 DLEC1Q9Y238 1755 aa19.65■□□□□ 0.74
SYNE3-202ENST00000553340 BAZ2AQ9UIF9 1905 aaKnown RBP19.65■□□□□ 0.74
SYNE3-202ENST00000553340 ANO9A1A5B4 782 aa19.65■□□□□ 0.74
SYNE3-202ENST00000553340 MYL1P05976 194 aa19.65■□□□□ 0.74
SYNE3-202ENST00000553340 TRIM21P19474 475 aaKnown RBP19.65■□□□□ 0.74
SYNE3-202ENST00000553340 MAGEA9P43362 315 aa19.65■□□□□ 0.74
SYNE3-202ENST00000553340 CTR9Q6PD62 1173 aa19.65■□□□□ 0.74
SYNE3-202ENST00000553340 RETREG2Q8NC44 543 aa19.65■□□□□ 0.74
SYNE3-202ENST00000553340 NHSL1Q5SYE7 1610 aa19.65■□□□□ 0.74
SYNE3-202ENST00000553340 ZNF804BA4D1E1 1349 aa19.65■□□□□ 0.74
SYNE3-202ENST00000553340 PPFIA4O75335 1185 aa19.65■□□□□ 0.74
SYNE3-202ENST00000553340 SRGNP10124 158 aa19.65■□□□□ 0.74
SYNE3-202ENST00000553340 SEMA3FQ13275 785 aa19.65■□□□□ 0.74
SYNE3-202ENST00000553340 IQCEQ6IPM2 695 aa19.65■□□□□ 0.74
SYNE3-202ENST00000553340 CCDC170Q8IYT3 715 aa19.65■□□□□ 0.74
SYNE3-202ENST00000553340 BLIDQ8IZY5 108 aa19.65■□□□□ 0.74
SYNE3-202ENST00000553340 EXOC1Q9NV70 894 aa19.65■□□□□ 0.74
SYNE3-202ENST00000553340 COL22A1Q8NFW1 1626 aaPredicted RBP19.65■□□□□ 0.74
SYNE3-202ENST00000553340 BAZ2BQ9UIF8 2168 aaKnown RBP19.64■□□□□ 0.74
SYNE3-202ENST00000553340 B4DLN1 442 aa19.64■□□□□ 0.73
SYNE3-202ENST00000553340 EIF3CLB5ME19 914 aaKnown RBP19.64■□□□□ 0.73
SYNE3-202ENST00000553340 USP17L12C9JPN9 530 aa19.64■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms