RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 SEPT7Q16181 437 aaKnown RBP7.58□□□□□ -1.2
SCFD1-208ENST00000553278 DUOXA2Q1HG44 320 aa7.58□□□□□ -1.2
SCFD1-208ENST00000553278 FOXD4L6Q3SYB3 417 aaPredicted RBP7.58□□□□□ -1.2
SCFD1-208ENST00000553278 NOL9Q5SY16 702 aaKnown RBP7.58□□□□□ -1.2
SCFD1-208ENST00000553278 PPP4R4Q6NUP7 873 aa7.58□□□□□ -1.2
SCFD1-208ENST00000553278 FOXD4L3Q6VB84 417 aaPredicted RBP7.58□□□□□ -1.2
SCFD1-208ENST00000553278 C14orf80Q86SX3 495 aa7.58□□□□□ -1.2
SCFD1-208ENST00000553278 HOOK2Q96ED9 719 aa7.58□□□□□ -1.2
SCFD1-208ENST00000553278 CAMKK2Q96RR4 588 aa7.58□□□□□ -1.2
SCFD1-208ENST00000553278 CCDC8Q9H0W5 538 aaPredicted RBP7.58□□□□□ -1.2
SCFD1-208ENST00000553278 CDH19Q9H159 772 aa7.58□□□□□ -1.2
SCFD1-208ENST00000553278 XPO5Q9HAV4 1204 aaKnown RBP eCLIP7.58□□□□□ -1.2
SCFD1-208ENST00000553278 GOLGA6AQ9NYA3 693 aa7.58□□□□□ -1.2
SCFD1-208ENST00000553278 CGGBP1Q9UFW8 167 aaPredicted RBP7.58□□□□□ -1.2
SCFD1-208ENST00000553278 COMMD10Q9Y6G5 202 aa7.58□□□□□ -1.2
SCFD1-208ENST00000553278 IGF1RP08069 1367 aa7.58□□□□□ -1.2
SCFD1-208ENST00000553278 TCRBV16S1A1N1A0A5B0 115 aa7.57□□□□□ -1.2
SCFD1-208ENST00000553278 RNGTTO60942 597 aaKnown RBP7.57□□□□□ -1.2
SCFD1-208ENST00000553278 NEFMP07197 916 aa7.57□□□□□ -1.2
SCFD1-208ENST00000553278 PYGMP11217 842 aa7.57□□□□□ -1.2
SCFD1-208ENST00000553278 SNRPBP14678 240 aaKnown RBP7.57□□□□□ -1.2
SCFD1-208ENST00000553278 HOXC12P31275 282 aa7.57□□□□□ -1.2
SCFD1-208ENST00000553278 SCNN1BP51168 640 aa7.57□□□□□ -1.2
SCFD1-208ENST00000553278 SART3Q15020 963 aaKnown RBP7.57□□□□□ -1.2
SCFD1-208ENST00000553278 NUTM2GQ5VZR2 741 aa7.57□□□□□ -1.2
SCFD1-208ENST00000553278 CDCA2Q69YH5 1023 aaPredicted RBP7.57□□□□□ -1.2
SCFD1-208ENST00000553278 GTF2IRD2BQ6EKJ0 949 aa7.57□□□□□ -1.2
SCFD1-208ENST00000553278 GTF2IRD2Q86UP8 949 aa7.57□□□□□ -1.2
SCFD1-208ENST00000553278 ANKLE2Q86XL3 938 aa7.57□□□□□ -1.2
SCFD1-208ENST00000553278 DMRTC2Q8IXT2 367 aaPredicted RBP7.57□□□□□ -1.2
SCFD1-208ENST00000553278 CNTD1Q8N815 330 aa7.57□□□□□ -1.2
SCFD1-208ENST00000553278 XAGE3Q8WTP9 111 aa7.57□□□□□ -1.2
SCFD1-208ENST00000553278 SCLYQ96I15 445 aa7.57□□□□□ -1.2
SCFD1-208ENST00000553278 TMPRSS13Q9BYE2 586 aa7.57□□□□□ -1.2
SCFD1-208ENST00000553278 ARNT2Q9HBZ2 717 aa7.57□□□□□ -1.2
SCFD1-208ENST00000553278 CYP4F12Q9HCS2 524 aa7.57□□□□□ -1.2
SCFD1-208ENST00000553278 GMPR2Q9P2T1 348 aaKnown RBP7.57□□□□□ -1.2
SCFD1-208ENST00000553278 FBXL21Q9UKT6 434 aa7.57□□□□□ -1.2
SCFD1-208ENST00000553278 TRHDEQ9UKU6 1024 aa7.57□□□□□ -1.2
SCFD1-208ENST00000553278 PCDHB12Q9Y5F1 795 aa7.57□□□□□ -1.2
SCFD1-208ENST00000553278 BLACEA4D250 179 aa7.56□□□□□ -1.2
SCFD1-208ENST00000553278 MEGF11A6BM72 1044 aa7.56□□□□□ -1.2
SCFD1-208ENST00000553278 NEMP1O14524 444 aa7.56□□□□□ -1.2
SCFD1-208ENST00000553278 CPP00450 1065 aa7.56□□□□□ -1.2
SCFD1-208ENST00000553278 SNRPB2P08579 225 aaKnown RBP7.56□□□□□ -1.2
SCFD1-208ENST00000553278 BPIP17213 487 aa7.56□□□□□ -1.2
SCFD1-208ENST00000553278 NAT1P18440 290 aa7.56□□□□□ -1.2
SCFD1-208ENST00000553278 GFRA1P56159 465 aa7.56□□□□□ -1.2
SCFD1-208ENST00000553278 SYDE2Q5VT97 1194 aa7.56□□□□□ -1.2
SCFD1-208ENST00000553278 C8orf86Q6ZUL3 223 aa7.56□□□□□ -1.2
SCFD1-208ENST00000553278 TCEAL8Q8IYN2 117 aa7.56□□□□□ -1.2
SCFD1-208ENST00000553278 MFSD2AQ8NA29 543 aa7.56□□□□□ -1.2
SCFD1-208ENST00000553278 TTC8Q8TAM2 541 aa7.56□□□□□ -1.2
SCFD1-208ENST00000553278 UBASH3BQ8TF42 649 aa7.56□□□□□ -1.2
SCFD1-208ENST00000553278 ISL2Q96A47 359 aa7.56□□□□□ -1.2
SCFD1-208ENST00000553278 WNK4Q96J92 1243 aa7.56□□□□□ -1.2
SCFD1-208ENST00000553278 NKX2-4Q9H2Z4 354 aa7.56□□□□□ -1.2
SCFD1-208ENST00000553278 PRDM6Q9NQX0 595 aa7.56□□□□□ -1.2
SCFD1-208ENST00000553278 LRRC4BQ9NT99 713 aa7.56□□□□□ -1.2
SCFD1-208ENST00000553278 KCNK4Q9NYG8 393 aa7.56□□□□□ -1.2
SCFD1-208ENST00000553278 CEP131Q9UPN4 1083 aa7.56□□□□□ -1.2
SCFD1-208ENST00000553278 DIS3Q9Y2L1 958 aaKnown RBP7.56□□□□□ -1.2
SCFD1-208ENST00000553278 FHOD1Q9Y613 1164 aa7.56□□□□□ -1.2
SCFD1-208ENST00000553278 AQP7O14520 342 aa7.55□□□□□ -1.2
SCFD1-208ENST00000553278 SHOXO15266 292 aa7.55□□□□□ -1.2
SCFD1-208ENST00000553278 ADH5P11766 374 aa7.55□□□□□ -1.2
SCFD1-208ENST00000553278 GRB10Q13322 594 aa7.55□□□□□ -1.2
SCFD1-208ENST00000553278 BRD3Q15059 726 aa7.55□□□□□ -1.2
SCFD1-208ENST00000553278 NTRK3Q16288 839 aa7.55□□□□□ -1.2
SCFD1-208ENST00000553278 FAM102BQ5T8I3 360 aa7.55□□□□□ -1.2
SCFD1-208ENST00000553278 PIK3R6Q5UE93 754 aa7.55□□□□□ -1.2
SCFD1-208ENST00000553278 NXNQ6DKJ4 435 aa7.55□□□□□ -1.2
SCFD1-208ENST00000553278 ZCCHC8Q6NZY4 707 aaKnown RBP7.55□□□□□ -1.2
SCFD1-208ENST00000553278 UBE3DQ7Z6J8 389 aa7.55□□□□□ -1.2
SCFD1-208ENST00000553278 DDX53Q86TM3 631 aaKnown RBP7.55□□□□□ -1.2
SCFD1-208ENST00000553278 KIF18BQ86Y91 864 aa7.55□□□□□ -1.2
SCFD1-208ENST00000553278 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.55□□□□□ -1.2
SCFD1-208ENST00000553278 DTWD1Q8N5C7 304 aa7.55□□□□□ -1.2
SCFD1-208ENST00000553278 PPP1R13LQ8WUF5 828 aa7.55□□□□□ -1.2
SCFD1-208ENST00000553278 BRF1Q92994 677 aa7.55□□□□□ -1.2
SCFD1-208ENST00000553278 KREMEN1Q96MU8 473 aa7.55□□□□□ -1.2
SCFD1-208ENST00000553278 ZNF180Q9UJW8 692 aa7.55□□□□□ -1.2
SCFD1-208ENST00000553278 GABRDO14764 452 aa7.54□□□□□ -1.2
SCFD1-208ENST00000553278 CREB3O43889 395 aa7.54□□□□□ -1.2
SCFD1-208ENST00000553278 LRIG2O94898 1065 aa7.54□□□□□ -1.2
SCFD1-208ENST00000553278 FBXO21O94952 628 aa7.54□□□□□ -1.2
SCFD1-208ENST00000553278 CRTAMO95727 393 aa7.54□□□□□ -1.2
SCFD1-208ENST00000553278 APBA3O96018 575 aa7.54□□□□□ -1.2
SCFD1-208ENST00000553278 ZNF445P59923 1031 aa7.54□□□□□ -1.2
SCFD1-208ENST00000553278 PPP2R5DQ14738 602 aa7.54□□□□□ -1.2
SCFD1-208ENST00000553278 MLC1Q15049 377 aa7.54□□□□□ -1.2
SCFD1-208ENST00000553278 SF1Q15637 639 aaKnown RBP7.54□□□□□ -1.2
SCFD1-208ENST00000553278 NBPF9Q3BBW0 867 aa7.54□□□□□ -1.2
SCFD1-208ENST00000553278 TSHZ1Q6ZSZ6 1077 aa7.54□□□□□ -1.2
SCFD1-208ENST00000553278 USP53Q70EK8 1073 aa7.54□□□□□ -1.2
SCFD1-208ENST00000553278 CHSY3Q70JA7 882 aa7.54□□□□□ -1.2
SCFD1-208ENST00000553278 ARMCX6Q7L4S7 300 aa7.54□□□□□ -1.2
SCFD1-208ENST00000553278 DYMQ7RTS9 669 aa7.54□□□□□ -1.2
SCFD1-208ENST00000553278 SAMD3Q8N6K7 520 aa7.54□□□□□ -1.2
SCFD1-208ENST00000553278 TMEM145Q8NBT3 493 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms