RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 MED14O60244 1454 aa9.88□□□□□ -0.83
VPS13D-212ENST00000543766 SNX2O60749 519 aa9.88□□□□□ -0.83
VPS13D-212ENST00000543766 MAN1A1P33908 653 aa9.88□□□□□ -0.83
VPS13D-212ENST00000543766 ACTN2P35609 894 aa9.88□□□□□ -0.83
VPS13D-212ENST00000543766 CBX3Q13185 183 aa9.88□□□□□ -0.83
VPS13D-212ENST00000543766 MAP7Q14244 749 aa9.88□□□□□ -0.83
VPS13D-212ENST00000543766 PLEKHO1Q53GL0 409 aaPredicted RBP9.88□□□□□ -0.83
VPS13D-212ENST00000543766 SPATA5Q8NB90 893 aa9.88□□□□□ -0.83
VPS13D-212ENST00000543766 GIMAP8Q8ND71 665 aaPredicted RBP9.88□□□□□ -0.83
VPS13D-212ENST00000543766 UBN1Q9NPG3 1134 aa9.88□□□□□ -0.83
VPS13D-212ENST00000543766 WDR37Q9Y2I8 494 aa9.88□□□□□ -0.83
VPS13D-212ENST00000543766 CD109Q6YHK3 1445 aa9.88□□□□□ -0.83
VPS13D-212ENST00000543766 ABCC3O15438 1527 aa9.88□□□□□ -0.83
VPS13D-212ENST00000543766 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.88□□□□□ -0.83
VPS13D-212ENST00000543766 TRIM75PA6NK02 468 aa9.88□□□□□ -0.83
VPS13D-212ENST00000543766 BHMG1C9JSJ3 638 aaPredicted RBP9.88□□□□□ -0.83
VPS13D-212ENST00000543766 MXI1P50539 228 aa9.88□□□□□ -0.83
VPS13D-212ENST00000543766 SMTNP53814 917 aa9.88□□□□□ -0.83
VPS13D-212ENST00000543766 RNF187Q5TA31 235 aaPredicted RBP9.88□□□□□ -0.83
VPS13D-212ENST00000543766 CCDC144CPQ8IYA2 1237 aa9.88□□□□□ -0.83
VPS13D-212ENST00000543766 NDFIP2Q9NV92 336 aa9.88□□□□□ -0.83
VPS13D-212ENST00000543766 PRKAG2Q9UGJ0 569 aa9.88□□□□□ -0.83
VPS13D-212ENST00000543766 AP3B1O00203 1094 aa9.87□□□□□ -0.83
VPS13D-212ENST00000543766 GFPT2O94808 682 aa9.87□□□□□ -0.83
VPS13D-212ENST00000543766 RPN1P04843 607 aaKnown RBP9.87□□□□□ -0.83
VPS13D-212ENST00000543766 HNRNPCP07910 306 aaKnown RBP eCLIP9.87□□□□□ -0.83
VPS13D-212ENST00000543766 CCNCP24863 283 aa9.87□□□□□ -0.83
VPS13D-212ENST00000543766 TNNI2P48788 182 aa9.87□□□□□ -0.83
VPS13D-212ENST00000543766 PAPOLAP51003 745 aaKnown RBP9.87□□□□□ -0.83
VPS13D-212ENST00000543766 MTX1Q13505 466 aa9.87□□□□□ -0.83
VPS13D-212ENST00000543766 SLFNL1Q499Z3 407 aa9.87□□□□□ -0.83
VPS13D-212ENST00000543766 CDC26Q8NHZ8 85 aa9.87□□□□□ -0.83
VPS13D-212ENST00000543766 SH3GLB2Q9NR46 395 aa9.87□□□□□ -0.83
VPS13D-212ENST00000543766 DNAI1Q9UI46 699 aa9.87□□□□□ -0.83
VPS13D-212ENST00000543766 XPO7Q9UIA9 1087 aaKnown RBP9.87□□□□□ -0.83
VPS13D-212ENST00000543766 ZNF711Q9Y462 761 aa9.87□□□□□ -0.83
VPS13D-212ENST00000543766 TLDC2A0PJX2 215 aa9.87□□□□□ -0.83
VPS13D-212ENST00000543766 ONECUT3O60422 494 aaPredicted RBP9.87□□□□□ -0.83
VPS13D-212ENST00000543766 ACAP1Q15027 740 aa9.87□□□□□ -0.83
VPS13D-212ENST00000543766 USP48Q86UV5 1035 aa9.87□□□□□ -0.83
VPS13D-212ENST00000543766 FERMT3Q86UX7 667 aa9.87□□□□□ -0.83
VPS13D-212ENST00000543766 NPLOC4Q8TAT6 608 aa9.87□□□□□ -0.83
VPS13D-212ENST00000543766 CCDC110Q8TBZ0 833 aa9.87□□□□□ -0.83
VPS13D-212ENST00000543766 EDARQ9UNE0 448 aa9.87□□□□□ -0.83
VPS13D-212ENST00000543766 POTEFA5A3E0 1075 aa9.87□□□□□ -0.83
VPS13D-212ENST00000543766 HOXC13P31276 330 aa9.87□□□□□ -0.83
VPS13D-212ENST00000543766 SMAD4Q13485 552 aaKnown RBP9.87□□□□□ -0.83
VPS13D-212ENST00000543766 ITGA7Q13683 1181 aa9.87□□□□□ -0.83
VPS13D-212ENST00000543766 PDXDC1Q6P996 788 aa9.87□□□□□ -0.83
VPS13D-212ENST00000543766 GIMAP1Q8WWP7 306 aa9.87□□□□□ -0.83
VPS13D-212ENST00000543766 UQCC2Q9BRT2 126 aa9.87□□□□□ -0.83
VPS13D-212ENST00000543766 POLR3AO14802 1390 aaPredicted RBP9.87□□□□□ -0.83
VPS13D-212ENST00000543766 PCP11498 1178 aaKnown RBP9.86□□□□□ -0.83
VPS13D-212ENST00000543766 ITGB3BPQ13352 177 aaPredicted RBP9.86□□□□□ -0.83
VPS13D-212ENST00000543766 STK11Q15831 433 aa9.86□□□□□ -0.83
VPS13D-212ENST00000543766 RUNDC1Q96C34 613 aa9.86□□□□□ -0.83
VPS13D-212ENST00000543766 NOS1P29475 1434 aa9.86□□□□□ -0.83
VPS13D-212ENST00000543766 NBNO60934 754 aa9.86□□□□□ -0.83
VPS13D-212ENST00000543766 TCHHQ07283 1943 aa9.86□□□□□ -0.83
VPS13D-212ENST00000543766 PCSK7Q16549 785 aa9.86□□□□□ -0.83
VPS13D-212ENST00000543766 C8orf48Q96LL4 319 aa9.86□□□□□ -0.83
VPS13D-212ENST00000543766 STK39Q9UEW8 545 aa9.86□□□□□ -0.83
VPS13D-212ENST00000543766 GOLGA6L9A6NEM1 432 aa9.86□□□□□ -0.83
VPS13D-212ENST00000543766 TBX3O15119 743 aa9.86□□□□□ -0.83
VPS13D-212ENST00000543766 CORO7P57737 925 aa9.86□□□□□ -0.83
VPS13D-212ENST00000543766 PDE4DQ08499 809 aa9.86□□□□□ -0.83
VPS13D-212ENST00000543766 IKQ13123 557 aaPredicted RBP9.86□□□□□ -0.83
VPS13D-212ENST00000543766 CLUL1Q15846 466 aa9.86□□□□□ -0.83
VPS13D-212ENST00000543766 SHROOM1Q2M3G4 852 aaPredicted RBP9.86□□□□□ -0.83
VPS13D-212ENST00000543766 KMT5BQ4FZB7 885 aa9.86□□□□□ -0.83
VPS13D-212ENST00000543766 IGSF11Q5DX21 431 aa9.86□□□□□ -0.83
VPS13D-212ENST00000543766 PODNQ7Z5L7 613 aa9.86□□□□□ -0.83
VPS13D-212ENST00000543766 C11orf74Q86VG3 221 aa9.86□□□□□ -0.83
VPS13D-212ENST00000543766 OSTM1Q86WC4 334 aa9.86□□□□□ -0.83
VPS13D-212ENST00000543766 LSM14AQ8ND56 463 aaKnown RBP9.86□□□□□ -0.83
VPS13D-212ENST00000543766 SH3TC2Q8TF17 1288 aa9.86□□□□□ -0.83
VPS13D-212ENST00000543766 LMBR1Q8WVP7 490 aa9.86□□□□□ -0.83
VPS13D-212ENST00000543766 ABTB1Q969K4 478 aaPredicted RBP9.86□□□□□ -0.83
VPS13D-212ENST00000543766 FUCA2Q9BTY2 467 aa9.86□□□□□ -0.83
VPS13D-212ENST00000543766 TUBA8Q9NY65 449 aaPredicted RBP9.86□□□□□ -0.83
VPS13D-212ENST00000543766 R3HDM2Q9Y2K5 976 aaKnown RBP9.86□□□□□ -0.83
VPS13D-212ENST00000543766 AP5Z1O43299 807 aa9.85□□□□□ -0.83
VPS13D-212ENST00000543766 ADCY5O95622 1261 aa9.85□□□□□ -0.83
VPS13D-212ENST00000543766 WHAMMP3Q1A5X7 153 aa9.85□□□□□ -0.83
VPS13D-212ENST00000543766 TBC1D9Q6ZT07 1266 aa9.85□□□□□ -0.83
VPS13D-212ENST00000543766 SLC44A2Q8IWA5 706 aaPredicted RBP9.85□□□□□ -0.83
VPS13D-212ENST00000543766 LINC00469Q8N7U9 141 aa9.85□□□□□ -0.83
VPS13D-212ENST00000543766 JPH3Q8WXH2 748 aaPredicted RBP9.85□□□□□ -0.83
VPS13D-212ENST00000543766 C16orf45Q96MC5 204 aaPredicted RBP9.85□□□□□ -0.83
VPS13D-212ENST00000543766 CHUKO15111 745 aa9.85□□□□□ -0.83
VPS13D-212ENST00000543766 BBOX1O75936 387 aa9.85□□□□□ -0.83
VPS13D-212ENST00000543766 TSPAN9O75954 239 aa9.85□□□□□ -0.83
VPS13D-212ENST00000543766 PSMD7P51665 324 aa9.85□□□□□ -0.83
VPS13D-212ENST00000543766 CETN1Q12798 172 aa9.85□□□□□ -0.83
VPS13D-212ENST00000543766 UBE4AQ14139 1066 aa9.85□□□□□ -0.83
VPS13D-212ENST00000543766 TMTC4Q5T4D3 741 aa9.85□□□□□ -0.83
VPS13D-212ENST00000543766 C6orf118Q5T5N4 469 aa9.85□□□□□ -0.83
VPS13D-212ENST00000543766 CCDC84Q86UT8 332 aaPredicted RBP9.85□□□□□ -0.83
VPS13D-212ENST00000543766 CABS1Q96KC9 395 aa9.85□□□□□ -0.83
VPS13D-212ENST00000543766 C1orf74Q96LT6 269 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms