RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 TAL1P17542 331 aaPredicted RBP16.84■□□□□ 0.29
SNHG1-213ENST00000540725 SNX17Q15036 470 aa16.84■□□□□ 0.29
SNHG1-213ENST00000540725 TRIM60Q495X7 471 aa16.84■□□□□ 0.29
SNHG1-213ENST00000540725 MKL1Q969V6 931 aa16.84■□□□□ 0.29
SNHG1-213ENST00000540725 MTMR4Q9NYA4 1195 aa16.84■□□□□ 0.29
SNHG1-213ENST00000540725 RIPK3Q9Y572 518 aa16.84■□□□□ 0.29
SNHG1-213ENST00000540725 PLIN4Q96Q06 1357 aa16.84■□□□□ 0.29
SNHG1-213ENST00000540725 ZBED4O75132 1171 aa16.83■□□□□ 0.28
SNHG1-213ENST00000540725 ZNF865P0CJ78 1059 aaPredicted RBP16.83■□□□□ 0.28
SNHG1-213ENST00000540725 CPXCR1Q8N123 301 aa16.83■□□□□ 0.28
SNHG1-213ENST00000540725 LRRC47Q8N1G4 583 aaKnown RBP16.83■□□□□ 0.28
SNHG1-213ENST00000540725 KIFC2Q96AC6 838 aa16.83■□□□□ 0.28
SNHG1-213ENST00000540725 DDX11Q96FC9 970 aa16.83■□□□□ 0.28
SNHG1-213ENST00000540725 PRDM5Q9NQX1 630 aaPredicted RBP16.83■□□□□ 0.28
SNHG1-213ENST00000540725 SYNPO2Q9UMS6 1093 aa16.83■□□□□ 0.28
SNHG1-213ENST00000540725 PHF24Q9UPV7 400 aa16.83■□□□□ 0.28
SNHG1-213ENST00000540725 CNPY2Q9Y2B0 182 aa16.83■□□□□ 0.28
SNHG1-213ENST00000540725 CTDP1Q9Y5B0 961 aaPredicted RBP16.83■□□□□ 0.28
SNHG1-213ENST00000540725 ATP2A1O14983 1001 aa16.82■□□□□ 0.28
SNHG1-213ENST00000540725 TTLL1O95922 423 aa16.82■□□□□ 0.28
SNHG1-213ENST00000540725 PGK1P00558 417 aa16.82■□□□□ 0.28
SNHG1-213ENST00000540725 TSPY3P0CV98 308 aa16.82■□□□□ 0.28
SNHG1-213ENST00000540725 TSPY8P0CW00 308 aa16.82■□□□□ 0.28
SNHG1-213ENST00000540725 AKR1A1P14550 325 aa16.82■□□□□ 0.28
SNHG1-213ENST00000540725 MX1P20591 662 aa16.82■□□□□ 0.28
SNHG1-213ENST00000540725 SLC4A3P48751 1232 aa16.82■□□□□ 0.28
SNHG1-213ENST00000540725 PDE4BQ07343 736 aa16.82■□□□□ 0.28
SNHG1-213ENST00000540725 ZMYM1Q5SVZ6 1142 aa16.82■□□□□ 0.28
SNHG1-213ENST00000540725 RNF180Q86T96 592 aa16.82■□□□□ 0.28
SNHG1-213ENST00000540725 SLC17A8Q8NDX2 589 aa16.82■□□□□ 0.28
SNHG1-213ENST00000540725 GMCL1P1Q8NEA9 526 aa16.82■□□□□ 0.28
SNHG1-213ENST00000540725 NEDD1Q8NHV4 660 aa16.82■□□□□ 0.28
SNHG1-213ENST00000540725 NAPBQ9H115 298 aa16.82■□□□□ 0.28
SNHG1-213ENST00000540725 PDLIM7Q9NR12 457 aa16.82■□□□□ 0.28
SNHG1-213ENST00000540725 MTMR10Q9NXD2 777 aa16.82■□□□□ 0.28
SNHG1-213ENST00000540725 FEM1BQ9UK73 627 aa16.82■□□□□ 0.28
SNHG1-213ENST00000540725 DNAJC25-GNG10A0A024R161 153 aa16.81■□□□□ 0.28
SNHG1-213ENST00000540725 SLC3A2P08195 630 aaKnown RBP16.81■□□□□ 0.28
SNHG1-213ENST00000540725 PPARAQ07869 468 aa16.81■□□□□ 0.28
SNHG1-213ENST00000540725 C1orf53Q5VUE5 145 aa16.81■□□□□ 0.28
SNHG1-213ENST00000540725 MSL3Q8N5Y2 521 aaKnown RBP16.81■□□□□ 0.28
SNHG1-213ENST00000540725 LENG1Q96BZ8 264 aaPredicted RBP16.81■□□□□ 0.28
SNHG1-213ENST00000540725 SLC38A10Q9HBR0 1119 aa16.81■□□□□ 0.28
SNHG1-213ENST00000540725 RAVER2Q9HCJ3 691 aaKnown RBP16.81■□□□□ 0.28
SNHG1-213ENST00000540725 SYNGAP1Q96PV0 1343 aa16.81■□□□□ 0.28
SNHG1-213ENST00000540725 SLFN13Q68D06 897 aa16.8■□□□□ 0.28
SNHG1-213ENST00000540725 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.8■□□□□ 0.28
SNHG1-213ENST00000540725 ADAMTS4O75173 837 aa16.79■□□□□ 0.28
SNHG1-213ENST00000540725 SNAI1O95863 264 aaPredicted RBP16.79■□□□□ 0.28
SNHG1-213ENST00000540725 BMP3P12645 472 aa16.79■□□□□ 0.28
SNHG1-213ENST00000540725 RRP1P56182 461 aaKnown RBP16.79■□□□□ 0.28
SNHG1-213ENST00000540725 TFAP4Q01664 338 aa16.79■□□□□ 0.28
SNHG1-213ENST00000540725 TLE2Q04725 743 aa16.79■□□□□ 0.28
SNHG1-213ENST00000540725 MAMDC4Q6UXC1 1216 aa16.79■□□□□ 0.28
SNHG1-213ENST00000540725 SH3RF1Q7Z6J0 888 aa16.79■□□□□ 0.28
SNHG1-213ENST00000540725 FBXO40Q9UH90 709 aa16.79■□□□□ 0.28
SNHG1-213ENST00000540725 ISY1Q9ULR0 285 aaKnown RBP16.79■□□□□ 0.28
SNHG1-213ENST00000540725 STXBP5LQ9Y2K9 1186 aa16.79■□□□□ 0.28
SNHG1-213ENST00000540725 SALL3Q9BXA9 1300 aa16.79■□□□□ 0.28
SNHG1-213ENST00000540725 SYNRGQ9UMZ2 1314 aa16.78■□□□□ 0.28
SNHG1-213ENST00000540725 A0A1W2PQ45 241 aaPredicted RBP16.78■□□□□ 0.28
SNHG1-213ENST00000540725 A0A1W2PQY0 241 aa16.78■□□□□ 0.28
SNHG1-213ENST00000540725 TRIM43BA6NCK2 446 aa16.78■□□□□ 0.28
SNHG1-213ENST00000540725 OAZ1P54368 228 aa16.78■□□□□ 0.28
SNHG1-213ENST00000540725 CCDC129Q6ZRS4 1044 aa16.78■□□□□ 0.28
SNHG1-213ENST00000540725 ZNF467Q7Z7K2 595 aaPredicted RBP16.78■□□□□ 0.28
SNHG1-213ENST00000540725 ANKRD35Q8N283 1001 aa16.78■□□□□ 0.28
SNHG1-213ENST00000540725 CHST13Q8NET6 341 aa16.78■□□□□ 0.28
SNHG1-213ENST00000540725 BADQ92934 168 aa16.78■□□□□ 0.28
SNHG1-213ENST00000540725 TRIM43Q96BQ3 446 aaPredicted RBP16.78■□□□□ 0.28
SNHG1-213ENST00000540725 ZBTB47Q9UFB7 747 aaPredicted RBP16.78■□□□□ 0.28
SNHG1-213ENST00000540725 ZHX1Q9UKY1 873 aaPredicted RBP16.78■□□□□ 0.28
SNHG1-213ENST00000540725 FAM184BQ9ULE4 1060 aa16.78■□□□□ 0.28
SNHG1-213ENST00000540725 TMEM232C9JQI7 657 aa16.77■□□□□ 0.28
SNHG1-213ENST00000540725 FOXP2O15409 715 aa16.77■□□□□ 0.28
SNHG1-213ENST00000540725 FDX1P10109 184 aa16.77■□□□□ 0.28
SNHG1-213ENST00000540725 SHHQ15465 462 aa16.77■□□□□ 0.28
SNHG1-213ENST00000540725 FGD4Q96M96 766 aa16.77■□□□□ 0.28
SNHG1-213ENST00000540725 TSEN34Q9BSV6 310 aaKnown RBP16.77■□□□□ 0.28
SNHG1-213ENST00000540725 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.77■□□□□ 0.28
SNHG1-213ENST00000540725 POTEB2H3BUK9 544 aa16.77■□□□□ 0.27
SNHG1-213ENST00000540725 CLTBP09497 229 aa16.77■□□□□ 0.27
SNHG1-213ENST00000540725 STAT2P52630 851 aa16.77■□□□□ 0.27
SNHG1-213ENST00000540725 CTDSPL2Q05D32 466 aa16.77■□□□□ 0.27
SNHG1-213ENST00000540725 PPP4R3BQ5MIZ7 849 aa16.77■□□□□ 0.27
SNHG1-213ENST00000540725 C9orf50Q5SZB4 431 aa16.77■□□□□ 0.27
SNHG1-213ENST00000540725 ANKRD45Q5TZF3 282 aa16.77■□□□□ 0.27
SNHG1-213ENST00000540725 FAM109BQ6ICB4 259 aaPredicted RBP16.77■□□□□ 0.27
SNHG1-213ENST00000540725 FAM160B2Q86V87 743 aa16.77■□□□□ 0.27
SNHG1-213ENST00000540725 CHMP4CQ96CF2 233 aa16.77■□□□□ 0.27
SNHG1-213ENST00000540725 GMCL1Q96IK5 515 aa16.77■□□□□ 0.27
SNHG1-213ENST00000540725 HOMER2Q9NSB8 354 aa16.77■□□□□ 0.27
SNHG1-213ENST00000540725 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.77■□□□□ 0.27
SNHG1-213ENST00000540725 TACC3Q9Y6A5 838 aa16.77■□□□□ 0.27
SNHG1-213ENST00000540725 TSPY2A6NKD2 308 aa16.76■□□□□ 0.27
SNHG1-213ENST00000540725 PQBP1O60828 265 aaKnown RBP16.76■□□□□ 0.27
SNHG1-213ENST00000540725 DUSP11O75319 330 aaKnown RBP16.76■□□□□ 0.27
SNHG1-213ENST00000540725 MCCP23508 829 aa16.76■□□□□ 0.27
SNHG1-213ENST00000540725 SLC1A4P43007 532 aa16.76■□□□□ 0.27
SNHG1-213ENST00000540725 ACLYP53396 1101 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms