RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 ABI2Q9NYB9 513 aaPredicted RBP5.08□□□□□ -1.6
CD44-226ENST00000527889 PA2G4Q9UQ80 394 aaKnown RBP5.08□□□□□ -1.6
CD44-226ENST00000527889 COL11A2P13942 1736 aaPredicted RBP5.08□□□□□ -1.6
CD44-226ENST00000527889 IBTKQ9P2D0 1353 aaPredicted RBP5.07□□□□□ -1.6
CD44-226ENST00000527889 NRXN2Q9P2S2 1712 aa5.07□□□□□ -1.6
CD44-226ENST00000527889 A0A1W2PP55 124 aa5.07□□□□□ -1.6
CD44-226ENST00000527889 SURF6O75683 361 aaKnown RBP5.07□□□□□ -1.6
CD44-226ENST00000527889 TRIM37O94972 964 aa5.07□□□□□ -1.6
CD44-226ENST00000527889 ZBTB7AO95365 584 aa5.07□□□□□ -1.6
CD44-226ENST00000527889 ETFBP38117 255 aa5.07□□□□□ -1.6
CD44-226ENST00000527889 EIF4A3P38919 411 aaKnown RBP5.07□□□□□ -1.6
CD44-226ENST00000527889 IL6STP40189 918 aaPredicted RBP5.07□□□□□ -1.6
CD44-226ENST00000527889 SOX9P48436 509 aa5.07□□□□□ -1.6
CD44-226ENST00000527889 EIF5P55010 431 aaKnown RBP5.07□□□□□ -1.6
CD44-226ENST00000527889 CASP7P55210 303 aa5.07□□□□□ -1.6
CD44-226ENST00000527889 KRT76Q01546 638 aa5.07□□□□□ -1.6
CD44-226ENST00000527889 TCIRG1Q13488 830 aa5.07□□□□□ -1.6
CD44-226ENST00000527889 PWP1Q13610 501 aa5.07□□□□□ -1.6
CD44-226ENST00000527889 CCDC85BQ15834 202 aaPredicted RBP5.07□□□□□ -1.6
CD44-226ENST00000527889 PRPF40BQ6NWY9 871 aaKnown RBP5.07□□□□□ -1.6
CD44-226ENST00000527889 RELL1Q8IUW5 271 aa5.07□□□□□ -1.6
CD44-226ENST00000527889 SYNE4Q8N205 404 aa5.07□□□□□ -1.6
CD44-226ENST00000527889 PMEPA1Q969W9 287 aa5.07□□□□□ -1.6
CD44-226ENST00000527889 ISCA1Q9BUE6 129 aa5.07□□□□□ -1.6
CD44-226ENST00000527889 PDGFDQ9GZP0 370 aaPredicted RBP5.07□□□□□ -1.6
CD44-226ENST00000527889 IL1RAPL2Q9NP60 686 aa5.07□□□□□ -1.6
CD44-226ENST00000527889 TIMMDC1Q9NPL8 285 aa5.07□□□□□ -1.6
CD44-226ENST00000527889 KCNQ5Q9NR82 932 aa5.07□□□□□ -1.6
CD44-226ENST00000527889 GINM1Q9NU53 330 aa5.07□□□□□ -1.6
CD44-226ENST00000527889 CCNL1Q9UK58 526 aaPredicted RBP5.07□□□□□ -1.6
CD44-226ENST00000527889 EFR3BQ9Y2G0 817 aa5.07□□□□□ -1.6
CD44-226ENST00000527889 DYRK1BQ9Y463 629 aa5.07□□□□□ -1.6
CD44-226ENST00000527889 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP5.07□□□□□ -1.6
CD44-226ENST00000527889 DLEC1Q9Y238 1755 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 CNTNAP4Q9C0A0 1308 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 FAM177BA6PVY3 158 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 MINDY4BA8MYZ0 360 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 H7C1W4 665 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 ENPP3O14638 875 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 KLF4O43474 513 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 CAMTA2O94983 1202 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 CYP2E1P05181 493 aaPredicted RBP5.06□□□□□ -1.6
CD44-226ENST00000527889 EPB42P16452 691 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 CES1P23141 567 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 GBP2P32456 591 aaPredicted RBP5.06□□□□□ -1.6
CD44-226ENST00000527889 OS9Q13438 667 aaPredicted RBP5.06□□□□□ -1.6
CD44-226ENST00000527889 MTX1Q13505 466 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 PTPROQ16827 1216 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 ARSJQ5FYB0 599 aaPredicted RBP5.06□□□□□ -1.6
CD44-226ENST00000527889 WDR44Q5JSH3 913 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 PEAR1Q5VY43 1037 aaPredicted RBP5.06□□□□□ -1.6
CD44-226ENST00000527889 TSHZ3Q63HK5 1081 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 FAM196AQ6ZSG2 479 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 ANKS3Q6ZW76 656 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 NLRP10Q86W26 655 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 AMIGO3Q86WK7 504 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 VWA5B2Q8N398 1253 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 CCDC191Q8NCU4 936 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 KLHDC4Q8TBB5 520 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 SLC16A10Q8TF71 515 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 ZNF296Q8WUU4 475 aaPredicted RBP5.06□□□□□ -1.6
CD44-226ENST00000527889 NANOS1Q8WY41 292 aaKnown RBP5.06□□□□□ -1.6
CD44-226ENST00000527889 KCNB2Q92953 911 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 IRF7Q92985 503 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 RHOVQ96L33 236 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 SIL1Q9H173 461 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 EHD4Q9H223 541 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 GPAMQ9HCL2 828 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 C11orf16Q9NQ32 467 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 LATS2Q9NRM7 1088 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 SIRPGQ9P1W8 387 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 STRIP2Q9ULQ0 834 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 PPM1HQ9ULR3 514 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 MRVI1Q9Y6F6 885 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 ECM29Q5VYK3 1845 aa5.06□□□□□ -1.6
CD44-226ENST00000527889 MYH1P12882 1939 aa5.05□□□□□ -1.6
CD44-226ENST00000527889 BRCA1P38398 1863 aaKnown RBP5.05□□□□□ -1.6
CD44-226ENST00000527889 UBN2Q6ZU65 1347 aa5.05□□□□□ -1.6
CD44-226ENST00000527889 A0A1W2PNR3 127 aa5.05□□□□□ -1.6
CD44-226ENST00000527889 CDC14CA4D256 554 aa5.05□□□□□ -1.6
CD44-226ENST00000527889 ERVV-1B6SEH8 477 aa5.05□□□□□ -1.6
CD44-226ENST00000527889 WIPF1O43516 503 aa5.05□□□□□ -1.6
CD44-226ENST00000527889 GREM1O60565 184 aa5.05□□□□□ -1.6
CD44-226ENST00000527889 PCCAP05165 728 aaPredicted RBP5.05□□□□□ -1.6
CD44-226ENST00000527889 GARTP22102 1010 aa5.05□□□□□ -1.6
CD44-226ENST00000527889 MSX1P28360 303 aa5.05□□□□□ -1.6
CD44-226ENST00000527889 RFX5P48382 616 aaPredicted RBP5.05□□□□□ -1.6
CD44-226ENST00000527889 FCGRTP55899 365 aa5.05□□□□□ -1.6
CD44-226ENST00000527889 FOXO4P98177 505 aa5.05□□□□□ -1.6
CD44-226ENST00000527889 TRIM28Q13263 835 aaKnown RBP5.05□□□□□ -1.6
CD44-226ENST00000527889 COL9A2Q14055 689 aaPredicted RBP5.05□□□□□ -1.6
CD44-226ENST00000527889 DBN1Q16643 649 aa5.05□□□□□ -1.6
CD44-226ENST00000527889 HSP90AB3PQ58FF7 597 aa5.05□□□□□ -1.6
CD44-226ENST00000527889 RNFT1Q5M7Z0 435 aa5.05□□□□□ -1.6
CD44-226ENST00000527889 TTC22Q5TAA0 569 aa5.05□□□□□ -1.6
CD44-226ENST00000527889 TTC39BQ5VTQ0 682 aaPredicted RBP5.05□□□□□ -1.6
CD44-226ENST00000527889 FBXL19Q6PCT2 694 aa5.05□□□□□ -1.6
CD44-226ENST00000527889 LMBR1LQ6UX01 489 aa5.05□□□□□ -1.6
CD44-226ENST00000527889 SLC17A8Q8NDX2 589 aa5.05□□□□□ -1.6
CD44-226ENST00000527889 ZNF837Q96EG3 531 aaPredicted RBP5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 106 ms