RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 OAZ1P54368 228 aa24.35■■□□□ 1.49
VPS28-206ENST00000526734 CHURC1Q8WUH1 139 aa24.35■■□□□ 1.49
VPS28-206ENST00000526734 TACC3Q9Y6A5 838 aa24.35■■□□□ 1.49
VPS28-206ENST00000526734 STAT2P52630 851 aa24.34■■□□□ 1.49
VPS28-206ENST00000526734 HAND2P61296 217 aa24.34■■□□□ 1.49
VPS28-206ENST00000526734 KCTD2Q14681 263 aa24.34■■□□□ 1.49
VPS28-206ENST00000526734 RRP12Q5JTH9 1297 aaKnown RBP24.34■■□□□ 1.49
VPS28-206ENST00000526734 ESR2Q92731 530 aa24.34■■□□□ 1.49
VPS28-206ENST00000526734 KIFC2Q96AC6 838 aa24.34■■□□□ 1.49
VPS28-206ENST00000526734 SLC38A10Q9HBR0 1119 aa24.34■■□□□ 1.49
VPS28-206ENST00000526734 INCENPQ9NQS7 918 aa24.34■■□□□ 1.49
VPS28-206ENST00000526734 MSCO60682 206 aa24.33■■□□□ 1.49
VPS28-206ENST00000526734 TOP1P11387 765 aaKnown RBP24.33■■□□□ 1.49
VPS28-206ENST00000526734 IMMTQ16891 758 aaKnown RBP24.33■■□□□ 1.49
VPS28-206ENST00000526734 CCDC178Q5BJE1 867 aa24.33■■□□□ 1.49
VPS28-206ENST00000526734 NPLOC4Q8TAT6 608 aa24.33■■□□□ 1.49
VPS28-206ENST00000526734 TTC14Q96N46 770 aa24.33■■□□□ 1.49
VPS28-206ENST00000526734 MMP19Q99542 508 aa24.33■■□□□ 1.49
VPS28-206ENST00000526734 IGHA2P01877 340 aa24.32■■□□□ 1.48
VPS28-206ENST00000526734 SNRNP48Q6IEG0 339 aaKnown RBP24.32■■□□□ 1.48
VPS28-206ENST00000526734 RCSD1Q6JBY9 416 aa24.32■■□□□ 1.48
VPS28-206ENST00000526734 TBC1D10CQ8IV04 446 aa24.32■■□□□ 1.48
VPS28-206ENST00000526734 DCAF4Q8WV16 495 aa24.32■■□□□ 1.48
VPS28-206ENST00000526734 NBPF3Q9H094 633 aa24.32■■□□□ 1.48
VPS28-206ENST00000526734 FLRT1Q9NZU1 646 aa24.32■■□□□ 1.48
VPS28-206ENST00000526734 FBXO40Q9UH90 709 aa24.32■■□□□ 1.48
VPS28-206ENST00000526734 OGDHLQ9ULD0 1010 aa24.32■■□□□ 1.48
VPS28-206ENST00000526734 ISY1Q9ULR0 285 aaKnown RBP24.32■■□□□ 1.48
VPS28-206ENST00000526734 DIS3Q9Y2L1 958 aaKnown RBP24.32■■□□□ 1.48
VPS28-206ENST00000526734 TMEM232C9JQI7 657 aa24.31■■□□□ 1.48
VPS28-206ENST00000526734 NMT2O60551 498 aa24.31■■□□□ 1.48
VPS28-206ENST00000526734 DHX30Q7L2E3 1194 aaKnown RBP eCLIP24.31■■□□□ 1.48
VPS28-206ENST00000526734 COBLO75128 1261 aa24.3■■□□□ 1.48
VPS28-206ENST00000526734 MCCP23508 829 aa24.3■■□□□ 1.48
VPS28-206ENST00000526734 IKQ13123 557 aaPredicted RBP24.3■■□□□ 1.48
VPS28-206ENST00000526734 CENPQQ7L2Z9 268 aaPredicted RBP24.3■■□□□ 1.48
VPS28-206ENST00000526734 NRBP1Q9UHY1 535 aa24.3■■□□□ 1.48
VPS28-206ENST00000526734 LAMA4Q16363 1823 aa24.3■■□□□ 1.48
VPS28-206ENST00000526734 COL11A1P12107 1806 aaPredicted RBP24.29■■□□□ 1.48
VPS28-206ENST00000526734 CHMLP26374 656 aa24.29■■□□□ 1.48
VPS28-206ENST00000526734 NECAB2Q7Z6G3 386 aa24.29■■□□□ 1.48
VPS28-206ENST00000526734 CHST13Q8NET6 341 aa24.29■■□□□ 1.48
VPS28-206ENST00000526734 MAML3Q96JK9 1138 aa24.29■■□□□ 1.48
VPS28-206ENST00000526734 CNNM2Q9H8M5 875 aa24.29■■□□□ 1.48
VPS28-206ENST00000526734 BRCA2P51587 3418 aa24.28■■□□□ 1.48
VPS28-206ENST00000526734 CCND3P30281 292 aaPredicted RBP24.28■■□□□ 1.48
VPS28-206ENST00000526734 IQCA1Q86XH1 822 aa24.28■■□□□ 1.48
VPS28-206ENST00000526734 CPXCR1Q8N123 301 aa24.28■■□□□ 1.48
VPS28-206ENST00000526734 TMEM47Q9BQJ4 181 aa24.28■■□□□ 1.48
VPS28-206ENST00000526734 NEDD4P46934 1319 aa24.28■■□□□ 1.48
VPS28-206ENST00000526734 CYBAP13498 195 aa24.27■■□□□ 1.48
VPS28-206ENST00000526734 CYP2C19P33261 490 aa24.27■■□□□ 1.48
VPS28-206ENST00000526734 TKFCQ3LXA3 575 aa24.27■■□□□ 1.48
VPS28-206ENST00000526734 DGKHQ86XP1 1220 aa24.27■■□□□ 1.48
VPS28-206ENST00000526734 MSL3Q8N5Y2 521 aaKnown RBP24.27■■□□□ 1.48
VPS28-206ENST00000526734 KRT23Q9C075 422 aa24.27■■□□□ 1.48
VPS28-206ENST00000526734 RAVER2Q9HCJ3 691 aaKnown RBP24.27■■□□□ 1.48
VPS28-206ENST00000526734 DDX20Q9UHI6 824 aaKnown RBP24.27■■□□□ 1.48
VPS28-206ENST00000526734 CCDC96Q2M329 555 aa24.26■■□□□ 1.47
VPS28-206ENST00000526734 ZNF792Q3KQV3 632 aa24.26■■□□□ 1.47
VPS28-206ENST00000526734 LHX8Q68G74 356 aa24.26■■□□□ 1.47
VPS28-206ENST00000526734 DDX11Q96FC9 970 aa24.26■■□□□ 1.47
VPS28-206ENST00000526734 PAWRQ96IZ0 340 aaKnown RBP24.26■■□□□ 1.47
VPS28-206ENST00000526734 BTNL9Q6UXG8 535 aa24.25■■□□□ 1.47
VPS28-206ENST00000526734 KCTD1Q719H9 257 aa24.25■■□□□ 1.47
VPS28-206ENST00000526734 DPF3Q92784 378 aa24.25■■□□□ 1.47
VPS28-206ENST00000526734 PNMA2Q9UL42 364 aa24.25■■□□□ 1.47
VPS28-206ENST00000526734 NR2E3Q9Y5X4 410 aa24.25■■□□□ 1.47
VPS28-206ENST00000526734 KDM4AO75164 1064 aa24.24■■□□□ 1.47
VPS28-206ENST00000526734 CNGA1P29973 690 aa24.24■■□□□ 1.47
VPS28-206ENST00000526734 IL25Q9H293 177 aa24.24■■□□□ 1.47
VPS28-206ENST00000526734 PRR12Q9ULL5 1215 aa24.24■■□□□ 1.47
VPS28-206ENST00000526734 RIPK3Q9Y572 518 aa24.24■■□□□ 1.47
VPS28-206ENST00000526734 U3KPZ7 1027 aaPredicted RBP24.24■■□□□ 1.47
VPS28-206ENST00000526734 DNAJC25-GNG10A0A024R161 153 aa24.23■■□□□ 1.47
VPS28-206ENST00000526734 SGSM2O43147 1006 aa24.23■■□□□ 1.47
VPS28-206ENST00000526734 SEPT4O43236 478 aa24.23■■□□□ 1.47
VPS28-206ENST00000526734 PGK2P07205 417 aa24.23■■□□□ 1.47
VPS28-206ENST00000526734 ZNF467Q7Z7K2 595 aaPredicted RBP24.23■■□□□ 1.47
VPS28-206ENST00000526734 TINF2Q9BSI4 451 aa24.23■■□□□ 1.47
VPS28-206ENST00000526734 C11orf49Q9H6J7 331 aa24.23■■□□□ 1.47
VPS28-206ENST00000526734 ACAD9Q9H845 621 aa24.23■■□□□ 1.47
VPS28-206ENST00000526734 SNHG28P0DPA3 235 aa24.22■■□□□ 1.47
VPS28-206ENST00000526734 PDHBP11177 359 aa24.22■■□□□ 1.47
VPS28-206ENST00000526734 GPATCH4Q5T3I0 446 aaKnown RBP24.22■■□□□ 1.47
VPS28-206ENST00000526734 ANKRD35Q8N283 1001 aa24.22■■□□□ 1.47
VPS28-206ENST00000526734 TRPV1Q8NER1 839 aa24.22■■□□□ 1.47
VPS28-206ENST00000526734 DIS3LQ8TF46 1054 aaKnown RBP24.22■■□□□ 1.47
VPS28-206ENST00000526734 ANKS1AQ92625 1134 aa24.22■■□□□ 1.47
VPS28-206ENST00000526734 MTMR7Q9Y216 660 aa24.22■■□□□ 1.47
VPS28-206ENST00000526734 ZNF536O15090 1300 aa24.21■■□□□ 1.47
VPS28-206ENST00000526734 SYNGAP1Q96PV0 1343 aa24.21■■□□□ 1.47
VPS28-206ENST00000526734 B4E1Z4 1266 aa24.21■■□□□ 1.47
VPS28-206ENST00000526734 SLC4A3P48751 1232 aa24.21■■□□□ 1.47
VPS28-206ENST00000526734 MNX1P50219 401 aaPredicted RBP24.21■■□□□ 1.47
VPS28-206ENST00000526734 TRDNQ13061 729 aa24.21■■□□□ 1.47
VPS28-206ENST00000526734 SYDE2Q5VT97 1194 aa24.21■■□□□ 1.47
VPS28-206ENST00000526734 ZSCAN10Q96SZ4 725 aaPredicted RBP24.21■■□□□ 1.47
VPS28-206ENST00000526734 MKI67P46013 3256 aaKnown RBP24.21■■□□□ 1.47
VPS28-206ENST00000526734 PFASO15067 1338 aa24.2■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms