RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 HIP1O00291 1037 aa11.06□□□□□ -0.64
HDAC3-215ENST00000519474 PLA2G6O60733 806 aa11.06□□□□□ -0.64
HDAC3-215ENST00000519474 ZBED4O75132 1171 aa11.06□□□□□ -0.64
HDAC3-215ENST00000519474 GSPT1P15170 499 aaKnown RBP11.06□□□□□ -0.64
HDAC3-215ENST00000519474 MFAP1P55081 439 aaKnown RBP11.06□□□□□ -0.64
HDAC3-215ENST00000519474 ZNF792Q3KQV3 632 aa11.06□□□□□ -0.64
HDAC3-215ENST00000519474 RRP12Q5JTH9 1297 aaKnown RBP11.06□□□□□ -0.64
HDAC3-215ENST00000519474 AKNAD1Q5T1N1 836 aa11.06□□□□□ -0.64
HDAC3-215ENST00000519474 TTC22Q5TAA0 569 aa11.06□□□□□ -0.64
HDAC3-215ENST00000519474 OLFML2BQ68BL8 750 aa11.06□□□□□ -0.64
HDAC3-215ENST00000519474 CPXCR1Q8N123 301 aa11.06□□□□□ -0.64
HDAC3-215ENST00000519474 ANKLE1Q8NAG6 615 aa11.06□□□□□ -0.64
HDAC3-215ENST00000519474 DIS3LQ8TF46 1054 aaKnown RBP11.06□□□□□ -0.64
HDAC3-215ENST00000519474 CHURC1Q8WUH1 139 aa11.06□□□□□ -0.64
HDAC3-215ENST00000519474 STAG1Q8WVM7 1258 aa11.06□□□□□ -0.64
HDAC3-215ENST00000519474 KIFC2Q96AC6 838 aa11.06□□□□□ -0.64
HDAC3-215ENST00000519474 GMCL1Q96IK5 515 aa11.06□□□□□ -0.64
HDAC3-215ENST00000519474 IL25Q9H293 177 aa11.06□□□□□ -0.64
HDAC3-215ENST00000519474 SLC38A10Q9HBR0 1119 aa11.06□□□□□ -0.64
HDAC3-215ENST00000519474 RAVER2Q9HCJ3 691 aaKnown RBP11.06□□□□□ -0.64
HDAC3-215ENST00000519474 CENPFP49454 3210 aa11.06□□□□□ -0.64
HDAC3-215ENST00000519474 ZMYM6O95789 1325 aa11.06□□□□□ -0.64
HDAC3-215ENST00000519474 ZNFX1Q9P2E3 1918 aaKnown RBP11.05□□□□□ -0.64
HDAC3-215ENST00000519474 ZNF213O14771 459 aa11.05□□□□□ -0.64
HDAC3-215ENST00000519474 PGK2P07205 417 aa11.05□□□□□ -0.64
HDAC3-215ENST00000519474 PPP4R3BQ5MIZ7 849 aa11.05□□□□□ -0.64
HDAC3-215ENST00000519474 PDE4DIPQ5VU43 2346 aa11.05□□□□□ -0.64
HDAC3-215ENST00000519474 ERICH6BQ5W0A0 696 aa11.05□□□□□ -0.64
HDAC3-215ENST00000519474 MFSD6Q6ZSS7 791 aa11.05□□□□□ -0.64
HDAC3-215ENST00000519474 KCTD1Q719H9 257 aa11.05□□□□□ -0.64
HDAC3-215ENST00000519474 NECAB2Q7Z6G3 386 aa11.05□□□□□ -0.64
HDAC3-215ENST00000519474 MAML3Q96JK9 1138 aa11.05□□□□□ -0.64
HDAC3-215ENST00000519474 TTC14Q96N46 770 aa11.05□□□□□ -0.64
HDAC3-215ENST00000519474 MMP19Q99542 508 aa11.05□□□□□ -0.64
HDAC3-215ENST00000519474 TMEM47Q9BQJ4 181 aa11.05□□□□□ -0.64
HDAC3-215ENST00000519474 HTATIP2Q9BUP3 242 aa11.05□□□□□ -0.64
HDAC3-215ENST00000519474 DSCC1Q9BVC3 393 aa11.05□□□□□ -0.64
HDAC3-215ENST00000519474 TOMM22Q9NS69 142 aa11.05□□□□□ -0.64
HDAC3-215ENST00000519474 DIAPH3Q9NSV4 1193 aa11.05□□□□□ -0.64
HDAC3-215ENST00000519474 SLC5A4Q9NY91 659 aa11.05□□□□□ -0.64
HDAC3-215ENST00000519474 STX8Q9UNK0 236 aa11.05□□□□□ -0.64
HDAC3-215ENST00000519474 DIS3Q9Y2L1 958 aaKnown RBP11.05□□□□□ -0.64
HDAC3-215ENST00000519474 DNAJC25-GNG10A0A024R161 153 aa11.04□□□□□ -0.64
HDAC3-215ENST00000519474 FDX1P10109 184 aa11.04□□□□□ -0.64
HDAC3-215ENST00000519474 CYBAP13498 195 aa11.04□□□□□ -0.64
HDAC3-215ENST00000519474 CHMLP26374 656 aa11.04□□□□□ -0.64
HDAC3-215ENST00000519474 CNGA1P29973 690 aa11.04□□□□□ -0.64
HDAC3-215ENST00000519474 SLC1A4P43007 532 aa11.04□□□□□ -0.64
HDAC3-215ENST00000519474 SLC4A3P48751 1232 aa11.04□□□□□ -0.64
HDAC3-215ENST00000519474 SNRNP48Q6IEG0 339 aaKnown RBP11.04□□□□□ -0.64
HDAC3-215ENST00000519474 TTBK2Q6IQ55 1244 aa11.04□□□□□ -0.64
HDAC3-215ENST00000519474 TBC1D10CQ8IV04 446 aa11.04□□□□□ -0.64
HDAC3-215ENST00000519474 TEX13BQ9BXU2 312 aa11.04□□□□□ -0.64
HDAC3-215ENST00000519474 ZSWIM5Q9P217 1185 aa11.04□□□□□ -0.64
HDAC3-215ENST00000519474 DDX20Q9UHI6 824 aaKnown RBP11.04□□□□□ -0.64
HDAC3-215ENST00000519474 ZNF536O15090 1300 aa11.04□□□□□ -0.64
HDAC3-215ENST00000519474 TNRC18O15417 2968 aaPredicted RBP11.04□□□□□ -0.64
HDAC3-215ENST00000519474 PARP14Q460N5 1801 aa11.03□□□□□ -0.64
HDAC3-215ENST00000519474 TOP1P11387 765 aaKnown RBP11.03□□□□□ -0.64
HDAC3-215ENST00000519474 PCP11498 1178 aaKnown RBP11.03□□□□□ -0.64
HDAC3-215ENST00000519474 COL6A1P12109 1028 aa11.03□□□□□ -0.64
HDAC3-215ENST00000519474 COPB2P35606 906 aa11.03□□□□□ -0.64
HDAC3-215ENST00000519474 SNAP25P60880 206 aa11.03□□□□□ -0.64
HDAC3-215ENST00000519474 KCTD2Q14681 263 aa11.03□□□□□ -0.64
HDAC3-215ENST00000519474 BTNL9Q6UXG8 535 aa11.03□□□□□ -0.64
HDAC3-215ENST00000519474 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.03□□□□□ -0.64
HDAC3-215ENST00000519474 RASGRP2Q7LDG7 609 aa11.03□□□□□ -0.64
HDAC3-215ENST00000519474 FAM160B2Q86V87 743 aa11.03□□□□□ -0.64
HDAC3-215ENST00000519474 AGBL1Q96MI9 1066 aa11.03□□□□□ -0.64
HDAC3-215ENST00000519474 C11orf49Q9H6J7 331 aa11.03□□□□□ -0.64
HDAC3-215ENST00000519474 PRR12Q9ULL5 1215 aa11.03□□□□□ -0.64
HDAC3-215ENST00000519474 MTMR7Q9Y216 660 aa11.03□□□□□ -0.64
HDAC3-215ENST00000519474 CTDP1Q9Y5B0 961 aaPredicted RBP11.03□□□□□ -0.64
HDAC3-215ENST00000519474 MYH4Q9Y623 1939 aa11.03□□□□□ -0.64
HDAC3-215ENST00000519474 COL11A1P12107 1806 aaPredicted RBP11.02□□□□□ -0.64
HDAC3-215ENST00000519474 SNAI1O95863 264 aaPredicted RBP11.02□□□□□ -0.65
HDAC3-215ENST00000519474 TAL1P17542 331 aaPredicted RBP11.02□□□□□ -0.65
HDAC3-215ENST00000519474 BRD2P25440 801 aaKnown RBP11.02□□□□□ -0.65
HDAC3-215ENST00000519474 STAT2P52630 851 aa11.02□□□□□ -0.65
HDAC3-215ENST00000519474 OAZ1P54368 228 aa11.02□□□□□ -0.65
HDAC3-215ENST00000519474 PTH1RQ03431 593 aa11.02□□□□□ -0.65
HDAC3-215ENST00000519474 ANO1Q5XXA6 986 aa11.02□□□□□ -0.65
HDAC3-215ENST00000519474 CHST13Q8NET6 341 aa11.02□□□□□ -0.65
HDAC3-215ENST00000519474 ANKS1AQ92625 1134 aa11.02□□□□□ -0.65
HDAC3-215ENST00000519474 DDX11Q96FC9 970 aa11.02□□□□□ -0.65
HDAC3-215ENST00000519474 ZKSCAN3Q9BRR0 538 aa11.02□□□□□ -0.65
HDAC3-215ENST00000519474 TINF2Q9BSI4 451 aa11.02□□□□□ -0.65
HDAC3-215ENST00000519474 RNF41Q9H4P4 317 aaPredicted RBP11.02□□□□□ -0.65
HDAC3-215ENST00000519474 COLQQ9Y215 455 aaPredicted RBP11.02□□□□□ -0.65
HDAC3-215ENST00000519474 A0A0G2JMZ2 1700 aa11.01□□□□□ -0.65
HDAC3-215ENST00000519474 SMCHD1A6NHR9 2005 aa11.01□□□□□ -0.65
HDAC3-215ENST00000519474 B4E1Z4 1266 aa11.01□□□□□ -0.65
HDAC3-215ENST00000519474 SEPT4O43236 478 aa11.01□□□□□ -0.65
HDAC3-215ENST00000519474 EVI5O60447 810 aa11.01□□□□□ -0.65
HDAC3-215ENST00000519474 MSCO60682 206 aa11.01□□□□□ -0.65
HDAC3-215ENST00000519474 ZNF865P0CJ78 1059 aaPredicted RBP11.01□□□□□ -0.65
HDAC3-215ENST00000519474 SNHG28P0DPA3 235 aa11.01□□□□□ -0.65
HDAC3-215ENST00000519474 SLC16A2P36021 539 aa11.01□□□□□ -0.65
HDAC3-215ENST00000519474 HABP4Q5JVS0 413 aaKnown RBP11.01□□□□□ -0.65
HDAC3-215ENST00000519474 MAMDC4Q6UXC1 1216 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 901.1 ms