RNA–Protein interactions for RNA: ENST00000503360.1

HMGB1P35-201, Transcript of high mobility group box 1 pseudogene 35, humanhuman

BASIC

Gene HMGB1P35, Length 598 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P35-201ENST00000503360 CCDC74BQ96LY2 380 aa4.18□□□□□ -1.74
HMGB1P35-201ENST00000503360 ASB16Q96NS5 453 aa4.18□□□□□ -1.74
HMGB1P35-201ENST00000503360 SORCS2Q96PQ0 1159 aa4.18□□□□□ -1.74
HMGB1P35-201ENST00000503360 TNFRSF12AQ9NP84 129 aa4.18□□□□□ -1.74
HMGB1P35-201ENST00000503360 A0A1W2PQ45 241 aaPredicted RBP4.17□□□□□ -1.74
HMGB1P35-201ENST00000503360 A0A1W2PQY0 241 aa4.17□□□□□ -1.74
HMGB1P35-201ENST00000503360 FADS2P1A8MWK0 482 aa4.17□□□□□ -1.74
HMGB1P35-201ENST00000503360 RBAK-RBAKDNI3L0D1 243 aa4.17□□□□□ -1.74
HMGB1P35-201ENST00000503360 MATN3O15232 486 aa4.17□□□□□ -1.74
HMGB1P35-201ENST00000503360 BUB1BO60566 1050 aaPredicted RBP4.17□□□□□ -1.74
HMGB1P35-201ENST00000503360 ITGB3P05106 788 aa4.17□□□□□ -1.74
HMGB1P35-201ENST00000503360 PFKLP17858 780 aa4.17□□□□□ -1.74
HMGB1P35-201ENST00000503360 MAPKAPK2P49137 400 aa4.17□□□□□ -1.74
HMGB1P35-201ENST00000503360 GALK1P51570 392 aa4.17□□□□□ -1.74
HMGB1P35-201ENST00000503360 RNF4P78317 190 aa4.17□□□□□ -1.74
HMGB1P35-201ENST00000503360 LIPIQ6XZB0 460 aa4.17□□□□□ -1.74
HMGB1P35-201ENST00000503360 ACSL6Q9UKU0 697 aa4.17□□□□□ -1.74
HMGB1P35-201ENST00000503360 TCFL5Q9UL49 500 aa4.17□□□□□ -1.74
HMGB1P35-201ENST00000503360 SH3D21A4FU49 640 aa4.16□□□□□ -1.74
HMGB1P35-201ENST00000503360 UPK3BL1B0FP48 263 aa4.16□□□□□ -1.74
HMGB1P35-201ENST00000503360 UPK3BL2E5RIL1 263 aa4.16□□□□□ -1.74
HMGB1P35-201ENST00000503360 MAPK8P45983 427 aa4.16□□□□□ -1.74
HMGB1P35-201ENST00000503360 VWA3BQ502W6 1294 aa4.16□□□□□ -1.74
HMGB1P35-201ENST00000503360 TMC6Q7Z403 805 aa4.16□□□□□ -1.74
HMGB1P35-201ENST00000503360 TCTN2Q96GX1 697 aa4.16□□□□□ -1.74
HMGB1P35-201ENST00000503360 EAF1Q96JC9 268 aaPredicted RBP4.16□□□□□ -1.74
HMGB1P35-201ENST00000503360 TAF6LQ9Y6J9 622 aa4.16□□□□□ -1.74
HMGB1P35-201ENST00000503360 TFE3P19532 575 aaPredicted RBP4.15□□□□□ -1.75
HMGB1P35-201ENST00000503360 EIF4BP23588 611 aaKnown RBP4.15□□□□□ -1.75
HMGB1P35-201ENST00000503360 GNA15P30679 374 aa4.15□□□□□ -1.75
HMGB1P35-201ENST00000503360 TNNI2P48788 182 aa4.15□□□□□ -1.75
HMGB1P35-201ENST00000503360 HTRA3P83110 453 aa4.15□□□□□ -1.75
HMGB1P35-201ENST00000503360 BBS9Q3SYG4 887 aa4.15□□□□□ -1.75
HMGB1P35-201ENST00000503360 HSF5Q4G112 596 aaPredicted RBP4.15□□□□□ -1.75
HMGB1P35-201ENST00000503360 CPZQ66K79 652 aa4.15□□□□□ -1.75
HMGB1P35-201ENST00000503360 SAPCD2Q86UD0 394 aa4.15□□□□□ -1.75
HMGB1P35-201ENST00000503360 SLCO6A1Q86UG4 719 aa4.15□□□□□ -1.75
HMGB1P35-201ENST00000503360 SAMD11Q96NU1 681 aa4.15□□□□□ -1.75
HMGB1P35-201ENST00000503360 RBM15Q96T37 977 aaKnown RBP eCLIP4.15□□□□□ -1.75
HMGB1P35-201ENST00000503360 PLCD4Q9BRC7 762 aa4.15□□□□□ -1.75
HMGB1P35-201ENST00000503360 NOC4LQ9BVI4 516 aaKnown RBP4.15□□□□□ -1.75
HMGB1P35-201ENST00000503360 FOXP3Q9BZS1 431 aa4.15□□□□□ -1.75
HMGB1P35-201ENST00000503360 RNF38Q9H0F5 515 aa4.15□□□□□ -1.75
HMGB1P35-201ENST00000503360 SMPD4Q9NXE4 827 aa4.15□□□□□ -1.75
HMGB1P35-201ENST00000503360 RGS13O14921 159 aa4.14□□□□□ -1.75
HMGB1P35-201ENST00000503360 MSL3P1P0C860 447 aa4.14□□□□□ -1.75
HMGB1P35-201ENST00000503360 RBM25P49756 843 aaKnown RBP4.14□□□□□ -1.75
HMGB1P35-201ENST00000503360 RAD51AP2Q09MP3 1159 aa4.14□□□□□ -1.75
HMGB1P35-201ENST00000503360 RAB3GAP1Q15042 981 aa4.14□□□□□ -1.75
HMGB1P35-201ENST00000503360 NPM2Q86SE8 214 aaKnown RBP4.14□□□□□ -1.75
HMGB1P35-201ENST00000503360 SLC16A11Q8NCK7 471 aa4.14□□□□□ -1.75
HMGB1P35-201ENST00000503360 ZNF428Q96B54 188 aa4.14□□□□□ -1.75
HMGB1P35-201ENST00000503360 BCL2L13Q9BXK5 485 aa4.14□□□□□ -1.75
HMGB1P35-201ENST00000503360 KRTAP3-1Q9BYR8 98 aa4.14□□□□□ -1.75
HMGB1P35-201ENST00000503360 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP4.14□□□□□ -1.75
HMGB1P35-201ENST00000503360 USP40Q9NVE5 1235 aa4.14□□□□□ -1.75
HMGB1P35-201ENST00000503360 CORINQ9Y5Q5 1042 aa4.14□□□□□ -1.75
HMGB1P35-201ENST00000503360 SSU72P8A0A1W2PR75 194 aa4.13□□□□□ -1.75
HMGB1P35-201ENST00000503360 FAM221AA4D161 298 aa4.13□□□□□ -1.75
HMGB1P35-201ENST00000503360 OVOL3O00110 214 aa4.13□□□□□ -1.75
HMGB1P35-201ENST00000503360 SRGAP3O43295 1099 aa4.13□□□□□ -1.75
HMGB1P35-201ENST00000503360 P4HBP07237 508 aaKnown RBP4.13□□□□□ -1.75
HMGB1P35-201ENST00000503360 FBLN1P23142 703 aa4.13□□□□□ -1.75
HMGB1P35-201ENST00000503360 CYP4F8P98187 520 aa4.13□□□□□ -1.75
HMGB1P35-201ENST00000503360 NBPF9Q3BBW0 867 aa4.13□□□□□ -1.75
HMGB1P35-201ENST00000503360 PLEKHN1Q494U1 663 aaPredicted RBP4.13□□□□□ -1.75
HMGB1P35-201ENST00000503360 EAPPQ56P03 285 aaPredicted RBP4.13□□□□□ -1.75
HMGB1P35-201ENST00000503360 ZC3H14Q6PJT7 736 aaKnown RBP4.13□□□□□ -1.75
HMGB1P35-201ENST00000503360 RPTNQ6XPR3 784 aa4.13□□□□□ -1.75
HMGB1P35-201ENST00000503360 FNIP1Q8TF40 1166 aa4.13□□□□□ -1.75
HMGB1P35-201ENST00000503360 GIPC2Q8TF65 315 aa4.13□□□□□ -1.75
HMGB1P35-201ENST00000503360 SETDB2Q96T68 719 aa4.13□□□□□ -1.75
HMGB1P35-201ENST00000503360 PRR13Q9NZ81 148 aa4.13□□□□□ -1.75
HMGB1P35-201ENST00000503360 REV1Q9UBZ9 1251 aa4.13□□□□□ -1.75
HMGB1P35-201ENST00000503360 WWC3Q9ULE0 1092 aa4.13□□□□□ -1.75
HMGB1P35-201ENST00000503360 AK5Q9Y6K8 562 aa4.13□□□□□ -1.75
HMGB1P35-201ENST00000503360 CYR61O00622 381 aa4.12□□□□□ -1.75
HMGB1P35-201ENST00000503360 SIGLEC6O43699 453 aa4.12□□□□□ -1.75
HMGB1P35-201ENST00000503360 GRIN3BO60391 1043 aa4.12□□□□□ -1.75
HMGB1P35-201ENST00000503360 NOBOXO60393 691 aa4.12□□□□□ -1.75
HMGB1P35-201ENST00000503360 BPNT1O95861 308 aa4.12□□□□□ -1.75
HMGB1P35-201ENST00000503360 SYPP08247 313 aa4.12□□□□□ -1.75
HMGB1P35-201ENST00000503360 ZNF16P17020 682 aaPredicted RBP4.12□□□□□ -1.75
HMGB1P35-201ENST00000503360 SDHBP21912 280 aa4.12□□□□□ -1.75
HMGB1P35-201ENST00000503360 ST13P50502 369 aaKnown RBP4.12□□□□□ -1.75
HMGB1P35-201ENST00000503360 TAGLNQ01995 201 aaKnown RBP4.12□□□□□ -1.75
HMGB1P35-201ENST00000503360 NT5DC1Q5TFE4 455 aa4.12□□□□□ -1.75
HMGB1P35-201ENST00000503360 FBXO33Q7Z6M2 555 aa4.12□□□□□ -1.75
HMGB1P35-201ENST00000503360 PHC3Q8NDX5 983 aa4.12□□□□□ -1.75
HMGB1P35-201ENST00000503360 GATAD2BQ8WXI9 593 aa4.12□□□□□ -1.75
HMGB1P35-201ENST00000503360 LNPKQ9C0E8 428 aa4.12□□□□□ -1.75
HMGB1P35-201ENST00000503360 CHURC1-FNTBB4DL54 471 aa4.11□□□□□ -1.75
HMGB1P35-201ENST00000503360 LDHBP07195 334 aaKnown RBP4.11□□□□□ -1.75
HMGB1P35-201ENST00000503360 PRKCAP17252 672 aa4.11□□□□□ -1.75
HMGB1P35-201ENST00000503360 BMP8BP34820 402 aa4.11□□□□□ -1.75
HMGB1P35-201ENST00000503360 HMGA2P52926 109 aa4.11□□□□□ -1.75
HMGB1P35-201ENST00000503360 CHMP4BP1P59074 171 aa4.11□□□□□ -1.75
HMGB1P35-201ENST00000503360 LMNB2Q03252 620 aa4.11□□□□□ -1.75
HMGB1P35-201ENST00000503360 MLECQ14165 292 aa4.11□□□□□ -1.75
HMGB1P35-201ENST00000503360 ZNF326Q5BKZ1 582 aaKnown RBP4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms