RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 FRMPD2Q68DX3 1309 aaPredicted RBP9.67□□□□□ -0.86
SF3A1-210ENST00000498259 DICER1Q9UPY3 1922 aaKnown RBP9.67□□□□□ -0.86
SF3A1-210ENST00000498259 SMCO2A6NFE2 343 aa9.67□□□□□ -0.86
SF3A1-210ENST00000498259 C19orf81C9J6K1 198 aa9.67□□□□□ -0.86
SF3A1-210ENST00000498259 LAD1O00515 517 aa9.67□□□□□ -0.86
SF3A1-210ENST00000498259 NDUFB10O96000 172 aa9.67□□□□□ -0.86
SF3A1-210ENST00000498259 EPS15P42566 896 aa9.67□□□□□ -0.86
SF3A1-210ENST00000498259 ADCY7P51828 1080 aa9.67□□□□□ -0.86
SF3A1-210ENST00000498259 PRELPP51888 382 aa9.67□□□□□ -0.86
SF3A1-210ENST00000498259 CEBPZQ03701 1054 aaKnown RBP9.67□□□□□ -0.86
SF3A1-210ENST00000498259 L1TD1Q5T7N2 865 aaKnown RBP9.67□□□□□ -0.86
SF3A1-210ENST00000498259 CAVIN1Q6NZI2 390 aaKnown RBP9.67□□□□□ -0.86
SF3A1-210ENST00000498259 BTNL9Q6UXG8 535 aa9.67□□□□□ -0.86
SF3A1-210ENST00000498259 SCYL3Q8IZE3 742 aa9.67□□□□□ -0.86
SF3A1-210ENST00000498259 ADGRF4Q8IZF3 695 aa9.67□□□□□ -0.86
SF3A1-210ENST00000498259 LINC00301Q8NCQ3 95 aa9.67□□□□□ -0.86
SF3A1-210ENST00000498259 RBM46Q8TBY0 533 aaKnown RBP9.67□□□□□ -0.86
SF3A1-210ENST00000498259 CUL5Q93034 780 aa9.67□□□□□ -0.86
SF3A1-210ENST00000498259 FERMT2Q96AC1 680 aa9.67□□□□□ -0.86
SF3A1-210ENST00000498259 TEPSINQ96N21 525 aa9.67□□□□□ -0.86
SF3A1-210ENST00000498259 USP28Q96RU2 1077 aa9.67□□□□□ -0.86
SF3A1-210ENST00000498259 AMNQ9BXJ7 453 aa9.67□□□□□ -0.86
SF3A1-210ENST00000498259 KIAA1683Q9H0B3 1180 aa9.67□□□□□ -0.86
SF3A1-210ENST00000498259 VCPKMTQ9H867 229 aa9.67□□□□□ -0.86
SF3A1-210ENST00000498259 GDPD2Q9HCC8 539 aa9.67□□□□□ -0.86
SF3A1-210ENST00000498259 PGAP2Q9UHJ9 254 aa9.67□□□□□ -0.86
SF3A1-210ENST00000498259 FEM1BQ9UK73 627 aa9.67□□□□□ -0.86
SF3A1-210ENST00000498259 CTDP1Q9Y5B0 961 aaPredicted RBP9.67□□□□□ -0.86
SF3A1-210ENST00000498259 ADAMTSL1Q8N6G6 1762 aa9.66□□□□□ -0.86
SF3A1-210ENST00000498259 PHF20L1A8MW92 1017 aa9.66□□□□□ -0.86
SF3A1-210ENST00000498259 USP17L10C9JJH3 530 aa9.66□□□□□ -0.86
SF3A1-210ENST00000498259 TMEM232C9JQI7 657 aa9.66□□□□□ -0.86
SF3A1-210ENST00000498259 STXBP3O00186 592 aa9.66□□□□□ -0.86
SF3A1-210ENST00000498259 WDR46O15213 610 aaKnown RBP9.66□□□□□ -0.86
SF3A1-210ENST00000498259 CYTH3O43739 400 aa9.66□□□□□ -0.86
SF3A1-210ENST00000498259 KINO60870 393 aaKnown RBP9.66□□□□□ -0.86
SF3A1-210ENST00000498259 CUTAO60888 179 aa9.66□□□□□ -0.86
SF3A1-210ENST00000498259 EPHX2P34913 555 aa9.66□□□□□ -0.86
SF3A1-210ENST00000498259 IREB2P48200 963 aaKnown RBP9.66□□□□□ -0.86
SF3A1-210ENST00000498259 ZRSR1Q15695 479 aaKnown RBP9.66□□□□□ -0.86
SF3A1-210ENST00000498259 SYDE2Q5VT97 1194 aa9.66□□□□□ -0.86
SF3A1-210ENST00000498259 FAM173BQ6P4H8 233 aa9.66□□□□□ -0.86
SF3A1-210ENST00000498259 REXO1Q8N1G1 1221 aaKnown RBP9.66□□□□□ -0.86
SF3A1-210ENST00000498259 KRI1Q8N9T8 703 aaKnown RBP9.66□□□□□ -0.86
SF3A1-210ENST00000498259 ZNF579Q8NAF0 562 aaKnown RBP9.66□□□□□ -0.86
SF3A1-210ENST00000498259 PIBF1Q8WXW3 757 aa9.66□□□□□ -0.86
SF3A1-210ENST00000498259 ANP32BQ92688 251 aaKnown RBP9.66□□□□□ -0.86
SF3A1-210ENST00000498259 MTMR8Q96EF0 704 aa9.66□□□□□ -0.86
SF3A1-210ENST00000498259 PIGSQ96S52 555 aa9.66□□□□□ -0.86
SF3A1-210ENST00000498259 WDR18Q9BV38 432 aa9.66□□□□□ -0.86
SF3A1-210ENST00000498259 UBA5Q9GZZ9 404 aa9.66□□□□□ -0.86
SF3A1-210ENST00000498259 JMJD4Q9H9V9 463 aa9.66□□□□□ -0.86
SF3A1-210ENST00000498259 FAM13BQ9NYF5 915 aa9.66□□□□□ -0.86
SF3A1-210ENST00000498259 ZNF112Q9UJU3 913 aa9.66□□□□□ -0.86
SF3A1-210ENST00000498259 CSADQ9Y600 493 aa9.66□□□□□ -0.86
SF3A1-210ENST00000498259 hCG_1642624A0A1W2PR95 340 aa9.65□□□□□ -0.86
SF3A1-210ENST00000498259 SHTN1A0MZ66 631 aa9.65□□□□□ -0.86
SF3A1-210ENST00000498259 GOLGA6L3A6NEY3 463 aa9.65□□□□□ -0.86
SF3A1-210ENST00000498259 UNCXA6NJT0 531 aa9.65□□□□□ -0.86
SF3A1-210ENST00000498259 DTNBO60941 627 aa9.65□□□□□ -0.86
SF3A1-210ENST00000498259 CAVIN2O95810 425 aa9.65□□□□□ -0.86
SF3A1-210ENST00000498259 EGFRP00533 1210 aa9.65□□□□□ -0.86
SF3A1-210ENST00000498259 FOSP01100 380 aaPredicted RBP9.65□□□□□ -0.86
SF3A1-210ENST00000498259 CMA1P23946 247 aa9.65□□□□□ -0.86
SF3A1-210ENST00000498259 FAM160A1Q05DH4 1040 aa9.65□□□□□ -0.86
SF3A1-210ENST00000498259 NONOQ15233 471 aaKnown RBP eCLIP9.65□□□□□ -0.86
SF3A1-210ENST00000498259 NBPF12Q5TAG4 269 aaPredicted RBP9.65□□□□□ -0.86
SF3A1-210ENST00000498259 ARL6IP4Q66PJ3 421 aaKnown RBP9.65□□□□□ -0.86
SF3A1-210ENST00000498259 WWC2Q6AWC2 1192 aa9.65□□□□□ -0.86
SF3A1-210ENST00000498259 KCTD1Q719H9 257 aa9.65□□□□□ -0.86
SF3A1-210ENST00000498259 FBXO11Q86XK2 927 aa9.65□□□□□ -0.86
SF3A1-210ENST00000498259 SIAH1Q8IUQ4 282 aa9.65□□□□□ -0.86
SF3A1-210ENST00000498259 SAMD3Q8N6K7 520 aa9.65□□□□□ -0.86
SF3A1-210ENST00000498259 PRPF38AQ8NAV1 312 aaKnown RBP9.65□□□□□ -0.86
SF3A1-210ENST00000498259 ZNF280CQ8ND82 737 aa9.65□□□□□ -0.86
SF3A1-210ENST00000498259 GPT2Q8TD30 523 aa9.65□□□□□ -0.86
SF3A1-210ENST00000498259 MRPS27Q92552 414 aaKnown RBP9.65□□□□□ -0.86
SF3A1-210ENST00000498259 WRNIP1Q96S55 665 aa9.65□□□□□ -0.86
SF3A1-210ENST00000498259 GZF1Q9H116 711 aaPredicted RBP9.65□□□□□ -0.86
SF3A1-210ENST00000498259 PSTPIP2Q9H939 334 aa9.65□□□□□ -0.86
SF3A1-210ENST00000498259 EHMT1Q9H9B1 1298 aa9.65□□□□□ -0.86
SF3A1-210ENST00000498259 RIC8AQ9NPQ8 531 aa9.65□□□□□ -0.86
SF3A1-210ENST00000498259 GJB4Q9NTQ9 266 aa9.65□□□□□ -0.86
SF3A1-210ENST00000498259 TMOD4Q9NZQ9 345 aa9.65□□□□□ -0.86
SF3A1-210ENST00000498259 PCDHA1Q9Y5I3 950 aa9.65□□□□□ -0.86
SF3A1-210ENST00000498259 CLIC4Q9Y696 253 aa9.65□□□□□ -0.86
SF3A1-210ENST00000498259 KIF28PB7ZC32 967 aa9.64□□□□□ -0.87
SF3A1-210ENST00000498259 TXLNAP40222 546 aa9.64□□□□□ -0.87
SF3A1-210ENST00000498259 ZNF445P59923 1031 aa9.64□□□□□ -0.87
SF3A1-210ENST00000498259 NR5A1Q13285 461 aa9.64□□□□□ -0.87
SF3A1-210ENST00000498259 AP3B2Q13367 1082 aa9.64□□□□□ -0.87
SF3A1-210ENST00000498259 CDC37Q16543 378 aaPredicted RBP9.64□□□□□ -0.87
SF3A1-210ENST00000498259 ZSCAN23Q3MJ62 389 aa9.64□□□□□ -0.87
SF3A1-210ENST00000498259 TTC38Q5R3I4 469 aa9.64□□□□□ -0.87
SF3A1-210ENST00000498259 NOL9Q5SY16 702 aaKnown RBP9.64□□□□□ -0.87
SF3A1-210ENST00000498259 KANK3Q6NY19 840 aa9.64□□□□□ -0.87
SF3A1-210ENST00000498259 PIK3AP1Q6ZUJ8 805 aa9.64□□□□□ -0.87
SF3A1-210ENST00000498259 KRT26Q7Z3Y9 468 aa9.64□□□□□ -0.87
SF3A1-210ENST00000498259 CCAR1Q8IX12 1150 aaKnown RBP9.64□□□□□ -0.87
SF3A1-210ENST00000498259 TRPM4Q8TD43 1214 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 357.2 ms