RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 CWC22Q9HCG8 908 aaKnown RBP8.62□□□□□ -1.03
VPS50-212ENST00000476413 TPSG1Q9NRR2 321 aa8.62□□□□□ -1.03
VPS50-212ENST00000476413 GTF2IRD1Q9UHL9 959 aa8.62□□□□□ -1.03
VPS50-212ENST00000476413 DIS3Q9Y2L1 958 aaKnown RBP8.62□□□□□ -1.03
VPS50-212ENST00000476413 NOP56O00567 594 aaKnown RBP8.61□□□□□ -1.03
VPS50-212ENST00000476413 PRODHO43272 600 aa8.61□□□□□ -1.03
VPS50-212ENST00000476413 DLX3O60479 287 aa8.61□□□□□ -1.03
VPS50-212ENST00000476413 KCNH1O95259 989 aa8.61□□□□□ -1.03
VPS50-212ENST00000476413 SRFP11831 508 aa8.61□□□□□ -1.03
VPS50-212ENST00000476413 MASP1P48740 699 aa8.61□□□□□ -1.03
VPS50-212ENST00000476413 NMIQ13287 307 aaPredicted RBP8.61□□□□□ -1.03
VPS50-212ENST00000476413 GRB10Q13322 594 aa8.61□□□□□ -1.03
VPS50-212ENST00000476413 PPP2R5DQ14738 602 aa8.61□□□□□ -1.03
VPS50-212ENST00000476413 PTPROQ16827 1216 aa8.61□□□□□ -1.03
VPS50-212ENST00000476413 C21orf62-AS1Q17RA5 79 aa8.61□□□□□ -1.03
VPS50-212ENST00000476413 RNF187Q5TA31 235 aaPredicted RBP8.61□□□□□ -1.03
VPS50-212ENST00000476413 RNF43Q68DV7 783 aa8.61□□□□□ -1.03
VPS50-212ENST00000476413 CDC6Q99741 560 aa8.61□□□□□ -1.03
VPS50-212ENST00000476413 IER2Q9BTL4 223 aa8.61□□□□□ -1.03
VPS50-212ENST00000476413 HDAC8Q9BY41 377 aa8.61□□□□□ -1.03
VPS50-212ENST00000476413 SLKQ9H2G2 1235 aaPredicted RBP8.61□□□□□ -1.03
VPS50-212ENST00000476413 H0Y8X5 98 aa8.6□□□□□ -1.03
VPS50-212ENST00000476413 RFPL3O75679 317 aa8.6□□□□□ -1.03
VPS50-212ENST00000476413 C6orf222P0C671 652 aaPredicted RBP8.6□□□□□ -1.03
VPS50-212ENST00000476413 KCNMA1Q12791 1236 aa8.6□□□□□ -1.03
VPS50-212ENST00000476413 POMZP3Q6PJE2 187 aa8.6□□□□□ -1.03
VPS50-212ENST00000476413 NSMFQ6X4W1 530 aa8.6□□□□□ -1.03
VPS50-212ENST00000476413 MFSD4AQ8N468 514 aa8.6□□□□□ -1.03
VPS50-212ENST00000476413 FBXL6Q8N531 539 aa8.6□□□□□ -1.03
VPS50-212ENST00000476413 PIWIL2Q8TC59 973 aaKnown RBP8.6□□□□□ -1.03
VPS50-212ENST00000476413 C1orf159Q96HA4 380 aa8.6□□□□□ -1.03
VPS50-212ENST00000476413 CLUHP3Q96NS8 147 aa8.6□□□□□ -1.03
VPS50-212ENST00000476413 MCMBPQ9BTE3 642 aa8.6□□□□□ -1.03
VPS50-212ENST00000476413 NKX2-4Q9H2Z4 354 aa8.6□□□□□ -1.03
VPS50-212ENST00000476413 CHST7Q9NS84 486 aa8.6□□□□□ -1.03
VPS50-212ENST00000476413 KCNH3Q9ULD8 1083 aa8.6□□□□□ -1.03
VPS50-212ENST00000476413 PLAAQ9Y263 795 aa8.6□□□□□ -1.03
VPS50-212ENST00000476413 PLD2O14939 933 aa8.59□□□□□ -1.03
VPS50-212ENST00000476413 DNAJC6O75061 913 aa8.59□□□□□ -1.03
VPS50-212ENST00000476413 OXCT1P55809 520 aa8.59□□□□□ -1.03
VPS50-212ENST00000476413 GFRA1P56159 465 aa8.59□□□□□ -1.03
VPS50-212ENST00000476413 RASSF7Q02833 373 aa8.59□□□□□ -1.03
VPS50-212ENST00000476413 PABPC4Q13310 644 aaKnown RBP eCLIP8.59□□□□□ -1.03
VPS50-212ENST00000476413 CYP27C1Q4G0S4 372 aa8.59□□□□□ -1.03
VPS50-212ENST00000476413 CRACR2BQ8N4Y2 399 aaPredicted RBP8.59□□□□□ -1.03
VPS50-212ENST00000476413 NINJ1Q92982 152 aa8.59□□□□□ -1.03
VPS50-212ENST00000476413 ZDHHC15Q96MV8 337 aa8.59□□□□□ -1.03
VPS50-212ENST00000476413 GPR62Q9BZJ7 368 aa8.59□□□□□ -1.03
VPS50-212ENST00000476413 BRINP2Q9C0B6 783 aa8.59□□□□□ -1.03
VPS50-212ENST00000476413 DUSP15Q9H1R2 295 aaPredicted RBP8.59□□□□□ -1.03
VPS50-212ENST00000476413 SPC25Q9HBM1 224 aa8.59□□□□□ -1.03
VPS50-212ENST00000476413 ST14Q9Y5Y6 855 aa8.59□□□□□ -1.03
VPS50-212ENST00000476413 PPM1GO15355 546 aaPredicted RBP8.58□□□□□ -1.04
VPS50-212ENST00000476413 VAMP4O75379 141 aa8.58□□□□□ -1.04
VPS50-212ENST00000476413 RAPGEF3O95398 923 aa8.58□□□□□ -1.04
VPS50-212ENST00000476413 SCG5P05408 212 aa8.58□□□□□ -1.04
VPS50-212ENST00000476413 SUMO1P63165 101 aaKnown RBP8.58□□□□□ -1.04
VPS50-212ENST00000476413 NFIAQ12857 509 aa8.58□□□□□ -1.04
VPS50-212ENST00000476413 NTRK3Q16288 839 aa8.58□□□□□ -1.04
VPS50-212ENST00000476413 NKPD1Q17RQ9 610 aa8.58□□□□□ -1.04
VPS50-212ENST00000476413 TM4SF20Q53R12 229 aa8.58□□□□□ -1.04
VPS50-212ENST00000476413 ANKRD13AQ8IZ07 590 aa8.58□□□□□ -1.04
VPS50-212ENST00000476413 DSCC1Q9BVC3 393 aa8.58□□□□□ -1.04
VPS50-212ENST00000476413 DNAJC25-GNG10A0A024R161 153 aa8.57□□□□□ -1.04
VPS50-212ENST00000476413 MEIS1O00470 390 aa8.57□□□□□ -1.04
VPS50-212ENST00000476413 VIL1P09327 827 aaKnown RBP8.57□□□□□ -1.04
VPS50-212ENST00000476413 CYP27A1Q02318 531 aa8.57□□□□□ -1.04
VPS50-212ENST00000476413 PLA2G4EQ3MJ16 856 aa8.57□□□□□ -1.04
VPS50-212ENST00000476413 FNDC3BQ53EP0 1204 aaKnown RBP8.57□□□□□ -1.04
VPS50-212ENST00000476413 CRTC3Q6UUV7 619 aa8.57□□□□□ -1.04
VPS50-212ENST00000476413 ENOX1Q8TC92 643 aaKnown RBP8.57□□□□□ -1.04
VPS50-212ENST00000476413 DBNDD2Q9BQY9 259 aa8.57□□□□□ -1.04
VPS50-212ENST00000476413 MRPL4Q9BYD3 311 aaKnown RBP8.57□□□□□ -1.04
VPS50-212ENST00000476413 CYP26B1Q9NR63 512 aa8.57□□□□□ -1.04
VPS50-212ENST00000476413 GPR55Q9Y2T6 319 aaPredicted RBP8.57□□□□□ -1.04
VPS50-212ENST00000476413 SF3B6Q9Y3B4 125 aaKnown RBP8.57□□□□□ -1.04
VPS50-212ENST00000476413 COL4A3BPQ9Y5P4 624 aa8.57□□□□□ -1.04
VPS50-212ENST00000476413 KCNQ2O43526 872 aa8.56□□□□□ -1.04
VPS50-212ENST00000476413 HOXC12P31275 282 aa8.56□□□□□ -1.04
VPS50-212ENST00000476413 MAP4K2Q12851 820 aa8.56□□□□□ -1.04
VPS50-212ENST00000476413 TRIM61Q5EBN2 209 aa8.56□□□□□ -1.04
VPS50-212ENST00000476413 SLC35F1Q5T1Q4 408 aa8.56□□□□□ -1.04
VPS50-212ENST00000476413 DENND5AQ6IQ26 1287 aa8.56□□□□□ -1.04
VPS50-212ENST00000476413 SPACA3Q8IXA5 215 aa8.56□□□□□ -1.04
VPS50-212ENST00000476413 NIM1KQ8IY84 436 aa8.56□□□□□ -1.04
VPS50-212ENST00000476413 FAM181AQ8N9Y4 354 aa8.56□□□□□ -1.04
VPS50-212ENST00000476413 TMEM145Q8NBT3 493 aa8.56□□□□□ -1.04
VPS50-212ENST00000476413 DAGLBQ8NCG7 672 aa8.56□□□□□ -1.04
VPS50-212ENST00000476413 KREMEN2Q8NCW0 462 aa8.56□□□□□ -1.04
VPS50-212ENST00000476413 MFSD3Q96ES6 412 aa8.56□□□□□ -1.04
VPS50-212ENST00000476413 TMX1Q9H3N1 280 aa8.56□□□□□ -1.04
VPS50-212ENST00000476413 PCDH12Q9NPG4 1184 aa8.56□□□□□ -1.04
VPS50-212ENST00000476413 PLAGL2Q9UPG8 496 aa8.56□□□□□ -1.04
VPS50-212ENST00000476413 A0A087X0B3 334 aa8.55□□□□□ -1.04
VPS50-212ENST00000476413 GNAT3A8MTJ3 354 aa8.55□□□□□ -1.04
VPS50-212ENST00000476413 WASH4PA8MWX3 477 aa8.55□□□□□ -1.04
VPS50-212ENST00000476413 GSNP06396 782 aa8.55□□□□□ -1.04
VPS50-212ENST00000476413 HMGB1P09429 215 aaKnown RBP8.55□□□□□ -1.04
VPS50-212ENST00000476413 AMPD3Q01432 767 aa8.55□□□□□ -1.04
VPS50-212ENST00000476413 AMPD2Q01433 879 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms