RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 TRIM34Q9BYJ4 488 aa10.88□□□□□ -0.67
HDAC3-205ENST00000469550 INTS13Q9NVM9 706 aa10.88□□□□□ -0.67
HDAC3-205ENST00000469550 FANCLQ9NW38 375 aa10.88□□□□□ -0.67
HDAC3-205ENST00000469550 RAB21Q9UL25 225 aa10.88□□□□□ -0.67
HDAC3-205ENST00000469550 ANGEL1Q9UNK9 670 aaKnown RBP10.88□□□□□ -0.67
HDAC3-205ENST00000469550 MROH7-TTC4A0A0A0MT08 1334 aa10.88□□□□□ -0.67
HDAC3-205ENST00000469550 TMEM232C9JQI7 657 aa10.88□□□□□ -0.67
HDAC3-205ENST00000469550 CUTAO60888 179 aa10.88□□□□□ -0.67
HDAC3-205ENST00000469550 TUBBP07437 444 aa10.88□□□□□ -0.67
HDAC3-205ENST00000469550 IVLP07476 585 aa10.88□□□□□ -0.67
HDAC3-205ENST00000469550 ZNF18P17022 549 aa10.88□□□□□ -0.67
HDAC3-205ENST00000469550 ACTN2P35609 894 aa10.88□□□□□ -0.67
HDAC3-205ENST00000469550 IMMTQ16891 758 aaKnown RBP10.88□□□□□ -0.67
HDAC3-205ENST00000469550 SUPT20HL1Q3ZLR7 823 aa10.88□□□□□ -0.67
HDAC3-205ENST00000469550 CCDC102BQ68D86 513 aa10.88□□□□□ -0.67
HDAC3-205ENST00000469550 CTR9Q6PD62 1173 aa10.88□□□□□ -0.67
HDAC3-205ENST00000469550 LDHAL6AQ6ZMR3 332 aa10.88□□□□□ -0.67
HDAC3-205ENST00000469550 MB21D2Q8IYB1 491 aaPredicted RBP10.88□□□□□ -0.67
HDAC3-205ENST00000469550 ENOX1Q8TC92 643 aaKnown RBP10.88□□□□□ -0.67
HDAC3-205ENST00000469550 HOOK1Q9UJC3 728 aaKnown RBP10.88□□□□□ -0.67
HDAC3-205ENST00000469550 RBBP6Q7Z6E9 1792 aaKnown RBP10.87□□□□□ -0.67
HDAC3-205ENST00000469550 KLF18A0A0U1RQI7 1052 aa10.87□□□□□ -0.67
HDAC3-205ENST00000469550 MYO1CO00159 1063 aa10.87□□□□□ -0.67
HDAC3-205ENST00000469550 CPLX1O14810 134 aa10.87□□□□□ -0.67
HDAC3-205ENST00000469550 FKTNO75072 461 aa10.87□□□□□ -0.67
HDAC3-205ENST00000469550 ZFYP08048 801 aaPredicted RBP10.87□□□□□ -0.67
HDAC3-205ENST00000469550 GNL2Q13823 731 aaKnown RBP10.87□□□□□ -0.67
HDAC3-205ENST00000469550 TAF7LQ5H9L4 462 aa10.87□□□□□ -0.67
HDAC3-205ENST00000469550 FBXO46Q6PJ61 603 aaPredicted RBP10.87□□□□□ -0.67
HDAC3-205ENST00000469550 CHST3Q7LGC8 479 aa10.87□□□□□ -0.67
HDAC3-205ENST00000469550 SRGAP1Q7Z6B7 1085 aa10.87□□□□□ -0.67
HDAC3-205ENST00000469550 CEP112Q8N8E3 955 aa10.87□□□□□ -0.67
HDAC3-205ENST00000469550 MSANTD4Q8NCY6 345 aa10.87□□□□□ -0.67
HDAC3-205ENST00000469550 WNK4Q96J92 1243 aa10.87□□□□□ -0.67
HDAC3-205ENST00000469550 PRMT6Q96LA8 375 aaPredicted RBP10.87□□□□□ -0.67
HDAC3-205ENST00000469550 EPC1Q9H2F5 836 aa10.87□□□□□ -0.67
HDAC3-205ENST00000469550 CNNM1Q9NRU3 951 aa10.87□□□□□ -0.67
HDAC3-205ENST00000469550 DACH1Q9UI36 760 aa10.87□□□□□ -0.67
HDAC3-205ENST00000469550 GOLGA8BA8MQT2 603 aa10.86□□□□□ -0.67
HDAC3-205ENST00000469550 PRC1O43663 620 aa10.86□□□□□ -0.67
HDAC3-205ENST00000469550 PPP1R12BO60237 982 aaPredicted RBP10.86□□□□□ -0.67
HDAC3-205ENST00000469550 IL15P40933 162 aaPredicted RBP10.86□□□□□ -0.67
HDAC3-205ENST00000469550 SOX10P56693 466 aa10.86□□□□□ -0.67
HDAC3-205ENST00000469550 SPDYE2Q495Y8 402 aa10.86□□□□□ -0.67
HDAC3-205ENST00000469550 CT47A1Q5JQC4 288 aaPredicted RBP10.86□□□□□ -0.67
HDAC3-205ENST00000469550 NT5DC1Q5TFE4 455 aa10.86□□□□□ -0.67
HDAC3-205ENST00000469550 HDXQ7Z353 690 aa10.86□□□□□ -0.67
HDAC3-205ENST00000469550 ATG9AQ7Z3C6 839 aa10.86□□□□□ -0.67
HDAC3-205ENST00000469550 SRLQ86TD4 932 aa10.86□□□□□ -0.67
HDAC3-205ENST00000469550 METTL16Q86W50 562 aaKnown RBP10.86□□□□□ -0.67
HDAC3-205ENST00000469550 MLKLQ8NB16 471 aa10.86□□□□□ -0.67
HDAC3-205ENST00000469550 DHX58Q96C10 678 aa10.86□□□□□ -0.67
HDAC3-205ENST00000469550 ZNF594Q96JF6 807 aaPredicted RBP10.86□□□□□ -0.67
HDAC3-205ENST00000469550 PANX2Q96RD6 677 aa10.86□□□□□ -0.67
HDAC3-205ENST00000469550 MAP3K14Q99558 947 aa10.86□□□□□ -0.67
HDAC3-205ENST00000469550 NAA15Q9BXJ9 866 aaKnown RBP10.86□□□□□ -0.67
HDAC3-205ENST00000469550 SERPINA10Q9UK55 444 aa10.86□□□□□ -0.67
HDAC3-205ENST00000469550 PCDHAC2Q9Y5I4 1007 aa10.86□□□□□ -0.67
HDAC3-205ENST00000469550 MROH5Q6ZUA9 1318 aa10.86□□□□□ -0.67
HDAC3-205ENST00000469550 ERLIN1O75477 346 aa10.86□□□□□ -0.67
HDAC3-205ENST00000469550 EIF3JO75822 258 aaKnown RBP10.86□□□□□ -0.67
HDAC3-205ENST00000469550 CDKL5O76039 1030 aa10.86□□□□□ -0.67
HDAC3-205ENST00000469550 CCDC175P0C221 793 aa10.86□□□□□ -0.67
HDAC3-205ENST00000469550 MDM2Q00987 491 aaPredicted RBP10.86□□□□□ -0.67
HDAC3-205ENST00000469550 PNOCQ13519 176 aa10.86□□□□□ -0.67
HDAC3-205ENST00000469550 BEND6Q5SZJ8 279 aaPredicted RBP10.86□□□□□ -0.67
HDAC3-205ENST00000469550 ISM2Q6H9L7 571 aa10.86□□□□□ -0.67
HDAC3-205ENST00000469550 TOGARAM2Q6ZUX3 1019 aa10.86□□□□□ -0.67
HDAC3-205ENST00000469550 IFNL1Q8IU54 200 aa10.86□□□□□ -0.67
HDAC3-205ENST00000469550 FOXP4Q8IVH2 680 aaPredicted RBP10.86□□□□□ -0.67
HDAC3-205ENST00000469550 TRIML1Q8N9V2 468 aa10.86□□□□□ -0.67
HDAC3-205ENST00000469550 NCOA7Q8NI08 942 aa10.86□□□□□ -0.67
HDAC3-205ENST00000469550 SLC10A4Q96EP9 437 aa10.86□□□□□ -0.67
HDAC3-205ENST00000469550 CCDC34Q96HJ3 373 aa10.86□□□□□ -0.67
HDAC3-205ENST00000469550 RIPOR2Q9Y4F9 1068 aa10.86□□□□□ -0.67
HDAC3-205ENST00000469550 PCDHA5Q9Y5H7 936 aa10.86□□□□□ -0.67
HDAC3-205ENST00000469550 TESPA1A2RU30 521 aaPredicted RBP10.85□□□□□ -0.67
HDAC3-205ENST00000469550 H3BQF6 201 aa10.85□□□□□ -0.67
HDAC3-205ENST00000469550 M0R2C6 588 aa10.85□□□□□ -0.67
HDAC3-205ENST00000469550 PPFIA3O75145 1194 aa10.85□□□□□ -0.67
HDAC3-205ENST00000469550 IFIT1P09914 478 aaKnown RBP10.85□□□□□ -0.67
HDAC3-205ENST00000469550 MARCKSP29966 332 aaPredicted RBP10.85□□□□□ -0.67
HDAC3-205ENST00000469550 HIBADHP31937 336 aaKnown RBP10.85□□□□□ -0.67
HDAC3-205ENST00000469550 CHMP4BP1P59074 171 aa10.85□□□□□ -0.67
HDAC3-205ENST00000469550 MKRN3Q13064 507 aaKnown RBP10.85□□□□□ -0.67
HDAC3-205ENST00000469550 TNFAIP1Q13829 316 aa10.85□□□□□ -0.67
HDAC3-205ENST00000469550 PRKG1Q13976 671 aa10.85□□□□□ -0.67
HDAC3-205ENST00000469550 FAM177A1Q8N128 213 aaPredicted RBP10.85□□□□□ -0.67
HDAC3-205ENST00000469550 CNNM3Q8NE01 707 aa10.85□□□□□ -0.67
HDAC3-205ENST00000469550 FAM84BQ96KN1 310 aaPredicted RBP10.85□□□□□ -0.67
HDAC3-205ENST00000469550 TRERF1Q96PN7 1200 aa10.85□□□□□ -0.67
HDAC3-205ENST00000469550 GPHNQ9NQX3 736 aaPredicted RBP10.85□□□□□ -0.67
HDAC3-205ENST00000469550 CDC23Q9UJX2 597 aa10.85□□□□□ -0.67
HDAC3-205ENST00000469550 KCNH3Q9ULD8 1083 aa10.85□□□□□ -0.67
HDAC3-205ENST00000469550 ZMYM6O95789 1325 aa10.85□□□□□ -0.67
HDAC3-205ENST00000469550 CLRN2A0PK11 232 aa10.85□□□□□ -0.67
HDAC3-205ENST00000469550 F8W031 263 aaPredicted RBP10.85□□□□□ -0.67
HDAC3-205ENST00000469550 USP2O75604 605 aaPredicted RBP10.85□□□□□ -0.67
HDAC3-205ENST00000469550 CIAO1O76071 339 aa10.85□□□□□ -0.67
HDAC3-205ENST00000469550 BMP6P22004 513 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms