RNA–Protein interactions for RNA: ENST00000463988.1

SNRNP40-203, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-203ENST00000463988 HELLSQ9NRZ9 838 aa17.07■□□□□ 0.32
SNRNP40-203ENST00000463988 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.07■□□□□ 0.32
SNRNP40-203ENST00000463988 MYH4Q9Y623 1939 aa17.07■□□□□ 0.32
SNRNP40-203ENST00000463988 LAMA3Q16787 3333 aa17.06■□□□□ 0.32
SNRNP40-203ENST00000463988 OAZ1P54368 228 aa17.06■□□□□ 0.32
SNRNP40-203ENST00000463988 ALX1Q15699 326 aa17.06■□□□□ 0.32
SNRNP40-203ENST00000463988 FAM47AQ5JRC9 791 aa17.06■□□□□ 0.32
SNRNP40-203ENST00000463988 GJC2Q5T442 439 aaPredicted RBP17.06■□□□□ 0.32
SNRNP40-203ENST00000463988 SLFN13Q68D06 897 aa17.06■□□□□ 0.32
SNRNP40-203ENST00000463988 ANAPC4Q9UJX5 808 aa17.06■□□□□ 0.32
SNRNP40-203ENST00000463988 CTDP1Q9Y5B0 961 aaPredicted RBP17.06■□□□□ 0.32
SNRNP40-203ENST00000463988 DNAJC25-GNG10A0A024R161 153 aa17.05■□□□□ 0.32
SNRNP40-203ENST00000463988 BMP3P12645 472 aa17.05■□□□□ 0.32
SNRNP40-203ENST00000463988 GPR153Q6NV75 609 aa17.05■□□□□ 0.32
SNRNP40-203ENST00000463988 CCDC129Q6ZRS4 1044 aa17.05■□□□□ 0.32
SNRNP40-203ENST00000463988 LRRC47Q8N1G4 583 aaKnown RBP17.05■□□□□ 0.32
SNRNP40-203ENST00000463988 KIFC2Q96AC6 838 aa17.05■□□□□ 0.32
SNRNP40-203ENST00000463988 GMCL1Q96IK5 515 aa17.05■□□□□ 0.32
SNRNP40-203ENST00000463988 FBXO40Q9UH90 709 aa17.05■□□□□ 0.32
SNRNP40-203ENST00000463988 RIPK3Q9Y572 518 aa17.05■□□□□ 0.32
SNRNP40-203ENST00000463988 SYNGAP1Q96PV0 1343 aa17.04■□□□□ 0.32
SNRNP40-203ENST00000463988 SOX1O00570 391 aaPredicted RBP17.04■□□□□ 0.32
SNRNP40-203ENST00000463988 PLA2G6O60733 806 aa17.04■□□□□ 0.32
SNRNP40-203ENST00000463988 RARBP10826 455 aa17.04■□□□□ 0.32
SNRNP40-203ENST00000463988 ATN1P54259 1190 aaPredicted RBP17.04■□□□□ 0.32
SNRNP40-203ENST00000463988 SNX17Q15036 470 aa17.04■□□□□ 0.32
SNRNP40-203ENST00000463988 LRRC41Q15345 812 aa17.04■□□□□ 0.32
SNRNP40-203ENST00000463988 LRIT3Q3SXY7 679 aa17.04■□□□□ 0.32
SNRNP40-203ENST00000463988 ANO1Q5XXA6 986 aa17.04■□□□□ 0.32
SNRNP40-203ENST00000463988 MAMDC4Q6UXC1 1216 aa17.04■□□□□ 0.32
SNRNP40-203ENST00000463988 ZNF467Q7Z7K2 595 aaPredicted RBP17.04■□□□□ 0.32
SNRNP40-203ENST00000463988 SMC5Q8IY18 1101 aa17.04■□□□□ 0.32
SNRNP40-203ENST00000463988 TDHQ8IZJ6 230 aa17.04■□□□□ 0.32
SNRNP40-203ENST00000463988 CHST13Q8NET6 341 aa17.04■□□□□ 0.32
SNRNP40-203ENST00000463988 CHURC1Q8WUH1 139 aa17.04■□□□□ 0.32
SNRNP40-203ENST00000463988 DDX11Q96FC9 970 aa17.04■□□□□ 0.32
SNRNP40-203ENST00000463988 UBE2OQ9C0C9 1292 aaKnown RBP17.04■□□□□ 0.32
SNRNP40-203ENST00000463988 RWDD1Q9H446 243 aaPredicted RBP17.04■□□□□ 0.32
SNRNP40-203ENST00000463988 CNPY2Q9Y2B0 182 aa17.04■□□□□ 0.32
SNRNP40-203ENST00000463988 DNAH12Q6ZR08 3092 aa17.04■□□□□ 0.32
SNRNP40-203ENST00000463988 PLXNA1Q9UIW2 1896 aa17.03■□□□□ 0.32
SNRNP40-203ENST00000463988 SMCHD1A6NHR9 2005 aa17.03■□□□□ 0.32
SNRNP40-203ENST00000463988 TSPY2A6NKD2 308 aa17.03■□□□□ 0.32
SNRNP40-203ENST00000463988 ORC4O43929 436 aa17.03■□□□□ 0.32
SNRNP40-203ENST00000463988 FGRP09769 529 aa17.03■□□□□ 0.32
SNRNP40-203ENST00000463988 ZNF865P0CJ78 1059 aaPredicted RBP17.03■□□□□ 0.32
SNRNP40-203ENST00000463988 RTP1P59025 263 aa17.03■□□□□ 0.32
SNRNP40-203ENST00000463988 MCMDC2Q4G0Z9 681 aa17.03■□□□□ 0.32
SNRNP40-203ENST00000463988 C1orf53Q5VUE5 145 aa17.03■□□□□ 0.32
SNRNP40-203ENST00000463988 SLC39A5Q6ZMH5 540 aa17.03■□□□□ 0.32
SNRNP40-203ENST00000463988 FAM160B2Q86V87 743 aa17.03■□□□□ 0.32
SNRNP40-203ENST00000463988 CPXCR1Q8N123 301 aa17.03■□□□□ 0.32
SNRNP40-203ENST00000463988 STAG1Q8WVM7 1258 aa17.03■□□□□ 0.32
SNRNP40-203ENST00000463988 RAVER2Q9HCJ3 691 aaKnown RBP17.03■□□□□ 0.32
SNRNP40-203ENST00000463988 XPNPEP3Q9NQH7 507 aa17.03■□□□□ 0.32
SNRNP40-203ENST00000463988 TMEM232C9JQI7 657 aa17.02■□□□□ 0.32
SNRNP40-203ENST00000463988 AKR1A1P14550 325 aa17.02■□□□□ 0.32
SNRNP40-203ENST00000463988 SLC1A4P43007 532 aa17.02■□□□□ 0.32
SNRNP40-203ENST00000463988 NOVP48745 357 aa17.02■□□□□ 0.32
SNRNP40-203ENST00000463988 STAT2P52630 851 aa17.02■□□□□ 0.32
SNRNP40-203ENST00000463988 CTDSPL2Q05D32 466 aa17.02■□□□□ 0.32
SNRNP40-203ENST00000463988 VPS53Q5VIR6 699 aa17.02■□□□□ 0.32
SNRNP40-203ENST00000463988 RNF180Q86T96 592 aa17.02■□□□□ 0.32
SNRNP40-203ENST00000463988 IL17RBQ9NRM6 502 aa17.02■□□□□ 0.32
SNRNP40-203ENST00000463988 PRKAG2Q9UGJ0 569 aa17.02■□□□□ 0.32
SNRNP40-203ENST00000463988 PHF24Q9UPV7 400 aa17.02■□□□□ 0.32
SNRNP40-203ENST00000463988 ZMYM6O95789 1325 aa17.01■□□□□ 0.31
SNRNP40-203ENST00000463988 TAL1P17542 331 aaPredicted RBP17.01■□□□□ 0.31
SNRNP40-203ENST00000463988 ADCYAP1R1P41586 468 aa17.01■□□□□ 0.31
SNRNP40-203ENST00000463988 RCSD1Q6JBY9 416 aa17.01■□□□□ 0.31
SNRNP40-203ENST00000463988 ANKRD35Q8N283 1001 aa17.01■□□□□ 0.31
SNRNP40-203ENST00000463988 LRCH3Q96II8 777 aa17.01■□□□□ 0.31
SNRNP40-203ENST00000463988 FAM227BQ96M60 508 aa17.01■□□□□ 0.31
SNRNP40-203ENST00000463988 LBHD1Q9BQE6 289 aaPredicted RBP17.01■□□□□ 0.31
SNRNP40-203ENST00000463988 LNPKQ9C0E8 428 aa17.01■□□□□ 0.31
SNRNP40-203ENST00000463988 STX8Q9UNK0 236 aa17.01■□□□□ 0.31
SNRNP40-203ENST00000463988 A0A0D9SFI3 127 aa17■□□□□ 0.31
SNRNP40-203ENST00000463988 RANBP6O60518 1105 aaKnown RBP17■□□□□ 0.31
SNRNP40-203ENST00000463988 SNAI1O95863 264 aaPredicted RBP17■□□□□ 0.31
SNRNP40-203ENST00000463988 FGAP02671 866 aa17■□□□□ 0.31
SNRNP40-203ENST00000463988 MYCNP04198 464 aaPredicted RBP17■□□□□ 0.31
SNRNP40-203ENST00000463988 MCCP23508 829 aa17■□□□□ 0.31
SNRNP40-203ENST00000463988 MDM2Q00987 491 aaPredicted RBP17■□□□□ 0.31
SNRNP40-203ENST00000463988 TKFCQ3LXA3 575 aa17■□□□□ 0.31
SNRNP40-203ENST00000463988 INCENPQ9NQS7 918 aa17■□□□□ 0.31
SNRNP40-203ENST00000463988 FAM184BQ9ULE4 1060 aa17■□□□□ 0.31
SNRNP40-203ENST00000463988 ATP11BQ9Y2G3 1177 aa17■□□□□ 0.31
SNRNP40-203ENST00000463988 TACC3Q9Y6A5 838 aa17■□□□□ 0.31
SNRNP40-203ENST00000463988 PGK1P00558 417 aa16.99■□□□□ 0.31
SNRNP40-203ENST00000463988 HSPD1P10809 573 aaKnown RBP16.99■□□□□ 0.31
SNRNP40-203ENST00000463988 SLC4A3P48751 1232 aa16.99■□□□□ 0.31
SNRNP40-203ENST00000463988 YTHDC1Q96MU7 727 aaKnown RBP16.99■□□□□ 0.31
SNRNP40-203ENST00000463988 TSEN34Q9BSV6 310 aaKnown RBP16.99■□□□□ 0.31
SNRNP40-203ENST00000463988 ABHD16BQ9H3Z7 469 aa16.99■□□□□ 0.31
SNRNP40-203ENST00000463988 OSBPL3Q9H4L5 887 aa16.99■□□□□ 0.31
SNRNP40-203ENST00000463988 ACAD9Q9H845 621 aa16.99■□□□□ 0.31
SNRNP40-203ENST00000463988 TCP11L1Q9NUJ3 509 aa16.99■□□□□ 0.31
SNRNP40-203ENST00000463988 ZNF536O15090 1300 aa16.98■□□□□ 0.31
SNRNP40-203ENST00000463988 NMT2O60551 498 aa16.98■□□□□ 0.31
SNRNP40-203ENST00000463988 ADAMTS4O75173 837 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms