RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 SH3D19Q5HYK7 790 aa26.59■■□□□ 1.85
CPSF4-204ENST00000436336 PIBF1Q8WXW3 757 aa26.59■■□□□ 1.85
CPSF4-204ENST00000436336 JMJD4Q9H9V9 463 aa26.59■■□□□ 1.85
CPSF4-204ENST00000436336 ZBTB4Q9P1Z0 1013 aaPredicted RBP26.59■■□□□ 1.85
CPSF4-204ENST00000436336 MYH15Q9Y2K3 1946 aa26.59■■□□□ 1.85
CPSF4-204ENST00000436336 IKQ13123 557 aaPredicted RBP26.59■■□□□ 1.85
CPSF4-204ENST00000436336 CHURC1Q8WUH1 139 aa26.59■■□□□ 1.85
CPSF4-204ENST00000436336 MTMR8Q96EF0 704 aa26.59■■□□□ 1.85
CPSF4-204ENST00000436336 PIGSQ96S52 555 aa26.59■■□□□ 1.85
CPSF4-204ENST00000436336 FEM1BQ9UK73 627 aa26.59■■□□□ 1.85
CPSF4-204ENST00000436336 VCAM1P19320 739 aa26.58■■□□□ 1.85
CPSF4-204ENST00000436336 PPIL2Q13356 520 aa26.58■■□□□ 1.85
CPSF4-204ENST00000436336 SYDE2Q5VT97 1194 aa26.58■■□□□ 1.85
CPSF4-204ENST00000436336 FAM160B2Q86V87 743 aa26.58■■□□□ 1.85
CPSF4-204ENST00000436336 HOMER1Q86YM7 354 aa26.58■■□□□ 1.85
CPSF4-204ENST00000436336 CNKSR2Q8WXI2 1034 aa26.58■■□□□ 1.85
CPSF4-204ENST00000436336 OTUD5Q96G74 571 aa26.58■■□□□ 1.85
CPSF4-204ENST00000436336 HMGCS2P54868 508 aa26.57■■□□□ 1.84
CPSF4-204ENST00000436336 DGKZQ13574 1117 aa26.57■■□□□ 1.84
CPSF4-204ENST00000436336 KRT40Q6A162 431 aa26.57■■□□□ 1.84
CPSF4-204ENST00000436336 GJB4Q9NTQ9 266 aa26.57■■□□□ 1.84
CPSF4-204ENST00000436336 TMOD4Q9NZQ9 345 aa26.57■■□□□ 1.84
CPSF4-204ENST00000436336 GUCY1B3Q02153 619 aa26.56■■□□□ 1.84
CPSF4-204ENST00000436336 CST9Q5W186 159 aa26.56■■□□□ 1.84
CPSF4-204ENST00000436336 OPTNQ96CV9 577 aa26.56■■□□□ 1.84
CPSF4-204ENST00000436336 SLC10A4Q96EP9 437 aa26.56■■□□□ 1.84
CPSF4-204ENST00000436336 PNMA6FA0A0J9YX94 578 aa26.56■■□□□ 1.84
CPSF4-204ENST00000436336 hCG_1984214I3L0E3 225 aa26.56■■□□□ 1.84
CPSF4-204ENST00000436336 CXCL11O14625 94 aa26.56■■□□□ 1.84
CPSF4-204ENST00000436336 F13A1P00488 732 aa26.56■■□□□ 1.84
CPSF4-204ENST00000436336 OTUD7BQ6GQQ9 843 aa26.56■■□□□ 1.84
CPSF4-204ENST00000436336 ZNF713Q8N859 430 aaPredicted RBP26.56■■□□□ 1.84
CPSF4-204ENST00000436336 SMC1BQ8NDV3 1235 aa26.56■■□□□ 1.84
CPSF4-204ENST00000436336 SH3GLB2Q9NR46 395 aa26.56■■□□□ 1.84
CPSF4-204ENST00000436336 PRR12Q9ULL5 1215 aa26.56■■□□□ 1.84
CPSF4-204ENST00000436336 PASKQ96RG2 1323 aa26.55■■□□□ 1.84
CPSF4-204ENST00000436336 IRF6O14896 467 aa26.55■■□□□ 1.84
CPSF4-204ENST00000436336 ZBTB5O15062 677 aa26.55■■□□□ 1.84
CPSF4-204ENST00000436336 FOXD4L5Q5VV16 416 aaPredicted RBP26.55■■□□□ 1.84
CPSF4-204ENST00000436336 FOXD4L4Q8WXT5 416 aaPredicted RBP26.55■■□□□ 1.84
CPSF4-204ENST00000436336 VPS54Q9P1Q0 977 aa26.55■■□□□ 1.84
CPSF4-204ENST00000436336 KCNH4Q9UQ05 1017 aa26.55■■□□□ 1.84
CPSF4-204ENST00000436336 RLFQ13129 1914 aa26.55■■□□□ 1.84
CPSF4-204ENST00000436336 FAM177A1Q8N128 213 aaPredicted RBP26.54■■□□□ 1.84
CPSF4-204ENST00000436336 TNPO1Q92973 898 aaKnown RBP26.54■■□□□ 1.84
CPSF4-204ENST00000436336 RPAP3Q9H6T3 665 aaPredicted RBP26.54■■□□□ 1.84
CPSF4-204ENST00000436336 WWC2Q6AWC2 1192 aa26.53■■□□□ 1.84
CPSF4-204ENST00000436336 BARHL2Q9NY43 387 aa26.53■■□□□ 1.84
CPSF4-204ENST00000436336 A0A0G2JLL6 359 aaPredicted RBP26.53■■□□□ 1.84
CPSF4-204ENST00000436336 MMP1P03956 469 aa26.53■■□□□ 1.84
CPSF4-204ENST00000436336 CDC37Q16543 378 aaPredicted RBP26.53■■□□□ 1.84
CPSF4-204ENST00000436336 HEATR3Q7Z4Q2 680 aa26.53■■□□□ 1.84
CPSF4-204ENST00000436336 PRRT2Q7Z6L0 340 aaPredicted RBP26.53■■□□□ 1.84
CPSF4-204ENST00000436336 GPKOWQ92917 476 aaPredicted RBP eCLIP26.53■■□□□ 1.84
CPSF4-204ENST00000436336 PHF20Q9BVI0 1012 aa26.53■■□□□ 1.84
CPSF4-204ENST00000436336 TANGO6Q9C0B7 1094 aa26.53■■□□□ 1.84
CPSF4-204ENST00000436336 CCDC148Q8NFR7 591 aa26.52■■□□□ 1.84
CPSF4-204ENST00000436336 KIFC2Q96AC6 838 aa26.52■■□□□ 1.84
CPSF4-204ENST00000436336 SHISA4Q96DD7 197 aa26.52■■□□□ 1.84
CPSF4-204ENST00000436336 SLF1Q9BQI6 1058 aa26.52■■□□□ 1.84
CPSF4-204ENST00000436336 ZSCAN16Q9H4T2 348 aaPredicted RBP26.52■■□□□ 1.84
CPSF4-204ENST00000436336 KCNJ14Q9UNX9 436 aa26.52■■□□□ 1.84
CPSF4-204ENST00000436336 TCHHQ07283 1943 aa26.52■■□□□ 1.84
CPSF4-204ENST00000436336 STXBP3O00186 592 aa26.51■■□□□ 1.83
CPSF4-204ENST00000436336 QRICH1Q2TAL8 776 aa26.51■■□□□ 1.83
CPSF4-204ENST00000436336 FERMT3Q86UX7 667 aa26.51■■□□□ 1.83
CPSF4-204ENST00000436336 PRPF38AQ8NAV1 312 aaKnown RBP26.51■■□□□ 1.83
CPSF4-204ENST00000436336 PROCA1Q8NCQ7 364 aaPredicted RBP26.51■■□□□ 1.83
CPSF4-204ENST00000436336 CCDC12Q8WUD4 166 aaPredicted RBP26.51■■□□□ 1.83
CPSF4-204ENST00000436336 FBXO28Q9NVF7 368 aa26.51■■□□□ 1.83
CPSF4-204ENST00000436336 TOMM70O94826 608 aa26.51■■□□□ 1.83
CPSF4-204ENST00000436336 SAFBQ15424 915 aaKnown RBP eCLIP26.51■■□□□ 1.83
CPSF4-204ENST00000436336 MCTP1Q6DN14 999 aa26.51■■□□□ 1.83
CPSF4-204ENST00000436336 RANBP17Q9H2T7 1088 aaKnown RBP26.51■■□□□ 1.83
CPSF4-204ENST00000436336 ATP6V1DQ9Y5K8 247 aa26.51■■□□□ 1.83
CPSF4-204ENST00000436336 COL11A1P12107 1806 aaPredicted RBP26.5■■□□□ 1.83
CPSF4-204ENST00000436336 FLOT1O75955 427 aa26.5■■□□□ 1.83
CPSF4-204ENST00000436336 RESTQ13127 1097 aa26.5■■□□□ 1.83
CPSF4-204ENST00000436336 YY1P25490 414 aa26.49■■□□□ 1.83
CPSF4-204ENST00000436336 GJA5P36382 358 aa26.49■■□□□ 1.83
CPSF4-204ENST00000436336 KIF23Q02241 960 aaPredicted RBP26.49■■□□□ 1.83
CPSF4-204ENST00000436336 WNK4Q96J92 1243 aa26.49■■□□□ 1.83
CPSF4-204ENST00000436336 PPP1R9AQ9ULJ8 1098 aa26.49■■□□□ 1.83
CPSF4-204ENST00000436336 USP17L15C9J2P7 530 aa26.48■■□□□ 1.83
CPSF4-204ENST00000436336 USP17L13C9JLJ4 530 aa26.48■■□□□ 1.83
CPSF4-204ENST00000436336 USP17L11C9JVI0 530 aa26.48■■□□□ 1.83
CPSF4-204ENST00000436336 USP17L18D6R9N7 530 aa26.48■■□□□ 1.83
CPSF4-204ENST00000436336 USP17L22D6RA61 530 aa26.48■■□□□ 1.83
CPSF4-204ENST00000436336 USP17L17D6RBQ6 530 aa26.48■■□□□ 1.83
CPSF4-204ENST00000436336 USP17L19D6RCP7 530 aa26.48■■□□□ 1.83
CPSF4-204ENST00000436336 USP17L20D6RJB6 530 aa26.48■■□□□ 1.83
CPSF4-204ENST00000436336 PPP1R11O60927 126 aaPredicted RBP26.48■■□□□ 1.83
CPSF4-204ENST00000436336 CALML3P27482 149 aa26.48■■□□□ 1.83
CPSF4-204ENST00000436336 NAPAP54920 295 aa26.48■■□□□ 1.83
CPSF4-204ENST00000436336 NLRP5P59047 1200 aa26.48■■□□□ 1.83
CPSF4-204ENST00000436336 USP17L24Q0WX57 530 aa26.48■■□□□ 1.83
CPSF4-204ENST00000436336 TYW1BQ6NUM6 668 aa26.48■■□□□ 1.83
CPSF4-204ENST00000436336 PPP1R18Q6NYC8 613 aa26.48■■□□□ 1.83
CPSF4-204ENST00000436336 CATSPERGQ6ZRH7 1159 aa26.48■■□□□ 1.83
CPSF4-204ENST00000436336 HUNKP57058 714 aa26.48■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms